SNP Profiles of PA 56 [PER]**   View Data

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 Key

 1234567891011121314
_Input profile
TTCCCCGGCCGGACCCAGCCGGGGAACC
1._RUQ_32
____CCGGCC__ACCCAGCC____AA__
2._PA_56_[PER]
____CCGGCC__ACCCAGCC____AA__
3._PA_56_[PER]
____CCGGCC__AACCAGCC____AA__
4._PA_56_[PER]
____CCGGCC__AACCAGCC____AA__
5._PA_56_[PER]
____CCGGCC__AACCAGCC____AA__
6._PA_56_[PER]
____CCGGCC__AACCAGCC____AA__
7._PA_56_[PER]
____CCGGCC__AACCAGCC________
8._RUQ_32
____CC__________AG__GG______
9._NA
TTCCCCGGCCGGAACCAGCCGGGGAACC
10._NA
TTCCCCGGCCGGAACCAGCCGGGGAACC
11._NA
TTCCCCGGCCGGAACCAGCCGGGGAACC
12._NA
TTCCCCGGCCGGAACCAGCCGGGGAACC
13._NA
TTCCCCGGCCGGAACCAGCCGGGG__CC
14._-
AACCCCCCGGGGACGGAGGGGGGGAAGG
 1516171819202122232425262728
_Input profile
AAACCTGTCGCCTTTTCTGGAGTTAAGG
1._RUQ_32
AAACCTGTCGCC__TT__GG______GG
2._PA_56_[PER]
AAACCTGTCGCC__TT__GG______GG
3._PA_56_[PER]
AAACCTGTCGCC__TT__GG______GG
4._PA_56_[PER]
AAACCTGTCGCC__TT__GG______GG
5._PA_56_[PER]
AAACCTGTCGCC__TT__GG______GG
6._PA_56_[PER]
AAACCTGTCGCC__TT__GG______GG
7._PA_56_[PER]
AAACCTGTCGCC__TT__GG______GG
8._RUQ_32
__AA____CGCC____CTGGAG__AAGG
9._NA
AAACCTGTCGCCTTTTCCGGAGTTAAGG
10._NA
AAACCTGTCGCCTTTTCCGGAGTTAAGG
11._NA
AAACCTGTCGCCTTTTCCGGAGTTAAGG
12._NA
AAACCTGTCGCCTTTTCCGGAGTTAAGG
13._NA
AAACCTGTCGCCTTTTCCGGAGTTAAGG
14._-
__AC__ACCGCCAAAA__CCAGAAAACC
 2930313233343536373839404142
_Input profile
CCCCAGCCCCGGGGTTTTCTCCCTCGGG
1._RUQ_32
__CCAG__CC______TT____CTCGGG
2._PA_56_[PER]
__CCAG__CC______TT____CTCGGG
3._PA_56_[PER]
__CCAG__CC______TT____CTCGGG
4._PA_56_[PER]
__CCAG__CC______TT____CTCGGG
5._PA_56_[PER]
__CCAG__CC______TT____CTCGGG
6._PA_56_[PER]
__CCAG__CC______TT____CTCGGG
7._PA_56_[PER]
__CCAG__CC______TT____CTCGGG
8._RUQ_32
____AG__________TT______CG__
9._NA
CCCCAGCTCCGGGGTTTTTTCCCTCGGG
10._NA
CCCCAGCTCCGGGGTTTTTTCCCTCGGG
11._NA
CCCCAGCTCCGGGGTTTTTTCCCTCGGG
12._NA
CCCCAGCTCCGGGGTTTTTTCCCTCGGG
13._NA
CCCCAGCTCCGGGGTTTTTTCCCTCGGG
14._-
__GGAG__GGCCGG__AAAGGGAGCGGG

Input profile: PA_56_[PER] RUQ_32

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._PA_56_[PER] RUQ_32

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._PA_56_[PER]

identical
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 238
 Dapeng Zhang, 2016

3._PA_56_[PER]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 6
 Dapeng Zhang, 2016

4._PA_56_[PER]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 4
 Dapeng Zhang, 2016

5._PA_56_[PER]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 3
 Dapeng Zhang, 2016

6._PA_56_[PER]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 2
 Dapeng Zhang, 2016

7._PA_56_[PER]

97.8 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

8._PA_56_[PER] RUQ_32

96.4 %
14 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

9._PA_56_[PER] NA

95.2 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: Dead
 Mars, 2018

10._PA_56_[PER] NA

95.2 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: Dead
 Mars, 2018

11._PA_56_[PER] NA

95.2 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

12._PA_56_[PER] NA

95.2 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._PA_56_[PER] NA

95.1 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

14._PA_56_[PER] -

47.2 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 76, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484