SNP Profiles of PA 195 [PER]   View Data

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 Key

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_Input profile
TTCCACGGCCGGCCCCGGCCGGGGAACC
1._RUQ_1642
TTCCACGGCCGGCCCCGGCCGGGGAACC
2._PA_195_[PER]
____ACGGCC__CCCCGGCC____AA__
3._PA_195_[PER]
____ACGGCC__CCCCGGCC____AA__
4._PA_195_[PER]
____ACGGCC__CCCCGGCC____AA__
5._PA_195_[PER]
____ACGGCC__CCCCGGCC____AA__
6._RUQ_1642
____ACGGCC__CCCCGGCC____AA__
7._RUQ_1642
____ACGGCC__CCCCGGCC____AA__
8._PA_195_[PER]
____ACGGCC__CC__GGCC____AA__
9._GC-05-166-4-19
TTCCACGGCCGGCCCCGGCCGGGGAACC
10._GC-05-166-4-19
TTCCACGGCCGGCCCCGGCCGGGGAACC
11._GC-05-166-4-19
TTCCACGGCCGGCCCCGGCCGGGGAACC
12._GC-05-166-4-19
TTCCACGGCCGGCCCCGGCCGGGGAACC
13._RUQ_1642
____AC__________GG__GG______
14._GC-05-166-4-19
AACCACCCGGGGCCGGGGGGGGGGAAGG
15._RUQ_1642
AACCACCCGGGGCCGGGGGGGGGGAAGG
 1516171819202122232425262728
_Input profile
AAAACCGGCGCCTTTTCTGGAGTTAAGG
1._RUQ_1642
AAAACCGGCGCCTTTTCTGGAGTTAAGG
2._PA_195_[PER]
AAAACCGGCGCC__TT__GG______GG
3._PA_195_[PER]
AAAACCGGCGCC__TT__GG______GG
4._PA_195_[PER]
AAAACCGGCGCC__TT__GG______GG
5._PA_195_[PER]
AAAACCGGCGCC__TT__GG______GG
6._RUQ_1642
AAAACCGGCGCC__TT__GG______GG
7._RUQ_1642
AAAACCGGCGCC__TT__GG______GG
8._PA_195_[PER]
AAAACCGGCGCC__TT__GG______GG
9._GC-05-166-4-19
AAAACCGGCGCCTTTTCTGGAGTTAAGG
10._GC-05-166-4-19
AAAACCGGCGCCTTTTCTGGAGTTAAGG
11._GC-05-166-4-19
AAAACCGGCGCCTTTTCTGGAGTTAAGG
12._GC-05-166-4-19
AAAACCGGCGCCTTTTCTGGAGTTAAGG
13._RUQ_1642
__AA____CGCCTT__CTGGAG__AAGG
14._GC-05-166-4-19
__AA__CCCGCCAAAA__CCAGAAAACC
15._RUQ_1642
__AA__CCCGCCAAAA__CCAGAAAACC
 2930313233343536373839404142
_Input profile
CCCCAGCCCCGGGGTTTTTTCCCCCGGG
1._RUQ_1642
CCCCAGCCCCGGGGTTTTTTCCCCCGGG
2._PA_195_[PER]
__CCAG__CC______TT____CCCGGG
3._PA_195_[PER]
__CCAG__CC______TT____CCCGGG
4._PA_195_[PER]
__CCAG__CC______TT____CCCGGG
5._PA_195_[PER]
__CCAG__CC______TT____CCCGGG
6._RUQ_1642
__CCAG__CC______TT____CCCGGG
7._RUQ_1642
__CCAG__CC______TT____CCCGGG
8._PA_195_[PER]
__CCAG__CC______TT____CCCGGG
9._GC-05-166-4-19
CCCCAGCTCCGGGGTTTTTTCCCCCGGG
10._GC-05-166-4-19
CCCCAGCTCCGGGGTTTTTTCCCCCGGG
11._GC-05-166-4-19
CCCCAGCTCCGGGGTTTTTTCCCCCGGG
12._GC-05-166-4-19
CCCCAGCTCCGGGGTTTTTTCCCCCGGG
13._RUQ_1642
____AGCT________TT______CG__
14._GC-05-166-4-19
__GGAG__GGCCGG__AAAAGGGGCGGG
15._RUQ_1642
__GGAG__GGCCGG__AAAAGGGGCGGG

Input profile: PA_195_[PER] RUQ_1642

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._PA_195_[PER] RUQ_1642

identical
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._PA_195_[PER]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5419 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

3._PA_195_[PER]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5419 1 > FP
 Dapeng Zhang, 2016

4._PA_195_[PER]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5419 2 > FP
 Dapeng Zhang, 2016

5._PA_195_[PER]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5419 5 > FP
 Dapeng Zhang, 2016

6._PA_195_[PER] RUQ_1642

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

7._PA_195_[PER] RUQ_1642

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

8._PA_195_[PER]

identical
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B C165 T1
 Dapeng Zhang, 2016

9._PA_195_[PER] GC-05-166-4-19

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

10._PA_195_[PER] GC-05-166-4-19

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

11._PA_195_[PER] GC-05-166-4-19

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

12._PA_195_[PER] GC-05-166-4-19

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

13._PA_195_[PER] RUQ_1642

96.9 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

14._PA_195_[PER] GC-05-166-4-19

47.2 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 4, Rep: 19, Tree: 4
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

15._PA_195_[PER] RUQ_1642

47.2 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484