SNP Profiles of PA 156 [PER]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCACGGCCGGAACCAACCGGGGAACC
1._PA_156_[PER]
____ACGGCC__AACCAACC____AA__
2._PA_156_[PER]
____ACGGCC__AACCAACC____AA__
3._PA_156_[PER]
____ACGGCC__AACCAACC____AA__
4._PA_156_[PER]
____ACGGCC__AACCAACC____AA__
5._RUQ_1531
____ACGGCC__AACCAACC____AA__
6._PA_156_[PER]
____ACGGCC__AACCAACC____AA__
7._PA_156_[PER]
____ACGG____AACCAACC____AA__
8._PA_156_[PER]
____ACGGCC__AA__AACC____AA__
9._GC-05-137-3-39
TTCCACGGCCGGAACCAACCGGGGAACC
10._GC-05-137-3-39
TTCCACGGCCGGAACCAACCGGGGAACC
11._GC-05-137-3-39
TTCCACGGCCGGAACCAACCGGGGAACC
12._GC-05-137-3-39
TTCCACGGCCGGAACCAACCGGGGAACC
13._GC-05-137-3-39
TTCCACGG__GGAACCAACCGGGGAACC
14._RUQ_1531
____AC__________AA__GG______
15._PA156[PER]
____AC__CCGGAAGGAA____GGAACC
16._GC-05-138-3-40
TTCCAATTCCGGAACCAACTGGGGAACC
17._GC-05-138-3-40
TTCCAATTCCGGAACCAACTGGGGAACC
18._GC-05-138-3-40
TTCCAATTCCGGAACCAACTGGGGAACC
19._GC-05-138-3-40
TTCCAATTCCGGAACCAACTGGGGAACC
20._GC-05-138-3-40
TTCCAATT__GGAACCAACTGGGGAACC
21._PA_156_[PER]
____AATTCC__AACCAACT____AA__
22._PA_156_[PER]
____AATTCC__AACCAACT____AA__
23._PA_156_[PER]
____AATTCC__AACCAACT____AA__
24._PA_156_[PER]
____AATTCC__AACCAACT____AA__
25._PA_156_[PER]
____AATT____AACCAACT____AA__
26._RUQ_1531
AACCACCCGGGGAAGGAAGGGGGGAAGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAACCCTTCGCCTTTTCTGGGGTTACGG
1._PA_156_[PER]
AAACCCTTCGCC__TT__GG______GG
2._PA_156_[PER]
AAACCCTTCGCC__TT__GG______GG
3._PA_156_[PER]
AAACCCTTCGCC__TT__GG______GG
4._PA_156_[PER]
AAACCCTTCGCC__TT__GG______GG
5._RUQ_1531
AAACCCTTCGCC__TT__GG______GG
6._PA_156_[PER]
AAACCCTTCGCC__TT__GG______GG
7._PA_156_[PER]
AAACCCTTCGCC__TT__GG______GG
8._PA_156_[PER]
AAACCCTTCGCC__TT__GG______GG
9._GC-05-137-3-39
AAACCCTTCGCCTTTTCTGGGGTTACGG
10._GC-05-137-3-39
AAACCCTTCGCCTTTTCTGGGGTTACGG
11._GC-05-137-3-39
AAACCCTTCGCCTTTTCTGGGGTTACGG
12._GC-05-137-3-39
AAACCCTTCGCCTTTTCTGGGGTTACGG
13._GC-05-137-3-39
AAACCCTTCGCCTTTTCTGGGGTTACGG
14._RUQ_1531
__AC____CGCCTT__CTGGGG__ACGG
15._PA156[PER]
________CGCCTT____________CC
16._GC-05-138-3-40
AACCCTGTCGAACTCTCCGGGGTTAACG
17._GC-05-138-3-40
AACCCTGTCGAACTCTCCGGGGTTAACG
18._GC-05-138-3-40
AACCCTGTCGAACTCTCCGGGGTTAACG
19._GC-05-138-3-40
AACCCTGTCGAACTCTCCGGGGTTAACG
20._GC-05-138-3-40
AACCCTGTCGAACTCTCCGGGGTTAACG
21._PA_156_[PER]
AACCCTGTCGAA__CT__GG______CG
22._PA_156_[PER]
AACCCTGTCGAA__CT__GG______CG
23._PA_156_[PER]
AACCCTGTCGAA__CT__GG______CG
24._PA_156_[PER]
AACCCTGTCGAA__CT__GG______CG
25._PA_156_[PER]
AACCCTGTCGAA__CT__GG______CG
26._RUQ_1531
__AC__AACGCCAAAA__CCGGAAACCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCCCGGAGCCGGGGTTTTTTCTCTGGAG
1._PA_156_[PER]
__CC__AGCC______TT____CTGGAG
2._PA_156_[PER]
__CC__AGCC______TT____CTGGAG
3._PA_156_[PER]
__CC__AGCC______TT____CTGGAG
4._PA_156_[PER]
__CC__AGCC______TT____CTGGAG
5._RUQ_1531
__CC__AGCC______TT____CTGGAG
6._PA_156_[PER]
__CC__AGCC______TT____CTGGAG
7._PA_156_[PER]
__CC__AGCC______TT____CTGGAG
8._PA_156_[PER]
__CC__AGCC______TT____CTGGAG
9._GC-05-137-3-39
CCCCAGAGCCGGGGTTTTTTCTCTGGAG
10._GC-05-137-3-39
CCCCAGAGCCGGGGTTTTTTCTCTGGAG
11._GC-05-137-3-39
CCCCAGAGCCGGGGTTTTTTCTCTGGAG
12._GC-05-137-3-39
CCCCAGAGCCGGGGTTTTTTCTCTGGAG
13._GC-05-137-3-39
CCCCAGAGCCGGGGTTTTTTCTCTGGAG
14._RUQ_1531
____AGAG________TT______GG__
15._PA156[PER]
GGCC____CC__GGTT____CT__CC__
16._GC-05-138-3-40
CCCTAAAGCCGGAGTTTTTTCTCTGGAG
17._GC-05-138-3-40
CCCTAAAGCCGGAGTTTTTTCTCTGGAG
18._GC-05-138-3-40
CCCTAAAGCCGGAGTTTTTTCTCTGGAG
19._GC-05-138-3-40
CCCTAAAGCCGGAGTTTTTTCTCTGGAG
20._GC-05-138-3-40
CCCTAAAGCCGGAGTTTTTTCTCTGGAG
21._PA_156_[PER]
__CT__AGCC______TT____CTGGAG
22._PA_156_[PER]
__CT__AGCC______TT____CTGGAG
23._PA_156_[PER]
__CT__AGCC______TT____CTGGAG
24._PA_156_[PER]
__CT__AGCC______TT____CTGGAG
25._PA_156_[PER]
__CT__AGCC______TT____CTGGAG
26._RUQ_1531
__GGAGAGGGCCGG__AAAAAGAGCCAG

Input profile: PA_156_[PER] RUQ_1531

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._PA_156_[PER]

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 2
 Dapeng Zhang, 2016

2._PA_156_[PER]

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 3 > FP
 Dapeng Zhang, 2016

3._PA_156_[PER]

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 4 > FP
 Dapeng Zhang, 2016

4._PA_156_[PER]

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 5 > FP
 Dapeng Zhang, 2016

5._PA_156_[PER] RUQ_1531

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

6._PA_156_[PER]

identical
24 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row1 C0184 28
 Dapeng Zhang, 2016

7._PA_156_[PER]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 1
 Dapeng Zhang, 2016

8._PA_156_[PER]

identical
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D295 T1
 Dapeng Zhang, 2016

9._PA_156_[PER] GC-05-137-3-39

98.8 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

10._PA_156_[PER] GC-05-137-3-39

98.8 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

11._PA_156_[PER] GC-05-137-3-39

98.8 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

12._PA_156_[PER] GC-05-137-3-39

98.8 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._PA_156_[PER] GC-05-137-3-39

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

14._PA_156_[PER] RUQ_1531

96.9 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Par
0.972

15._PA_156_[PER] PA156[PER]

80 %
20 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

16._PA_156_[PER] GC-05-138-3-40

78.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

17._PA_156_[PER] GC-05-138-3-40

78.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

18._PA_156_[PER] GC-05-138-3-40

78.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

19._PA_156_[PER] GC-05-138-3-40

78.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

20._PA_156_[PER] GC-05-138-3-40

78 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

21._PA_156_[PER]

75 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 4
 Dapeng Zhang, 2016

22._PA_156_[PER]

75 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 5
 Dapeng Zhang, 2016

23._PA_156_[PER]

75 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 1 > FP
 Dapeng Zhang, 2016

24._PA_156_[PER]

75 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 3 > FP
 Dapeng Zhang, 2016

25._PA_156_[PER]

73.9 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 2 > FP
 Dapeng Zhang, 2016

26._PA_156_[PER] RUQ_1531

44.6 %
37 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP899 32TcSNP998 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484