SNP Profiles of PA 137 [PER]   View Data

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 Key

 1234567891011121314
_Input profile
CCACGTACAGAACCAGACCTGGCGGGCC
1._RUQ_36
__ACGTACAGAA__AGACCTGGCGGGCC
2._RUQ_1081
__ACGTACAGAA__AGACCTGGCGGGCC
3._RUQ_1081
__ACGTACAGAA__AGACCTGGCGGGCC
4._PA_137_[PER]
__ACGTACAGAA__AGACCTGGCGGGCC
5._PA_137_[PER]
__ACGTACAGAA__AGACCTGGCGGGCC
6._PA_137_[PER]
__ACGTACAGAA__AGACCTGGCGGGCC
7._PA_137_[PER]
__ACGTACAGAA__AGACCTGGCG__CC
8._PA137[PER]
__AC__ACAGAACC________CG__CC
9._RUQ_1081
CCACGTACAGAACCAGACCTGGCGGGCC
10._PA_137_[PER]
__ACGTAAAGAA__AGACCTGGCGGGCC
11._PA_137_[PER]
__ACGTAAAGAA__AGACCTGGCGGGCC
12._PA_137_[PER]
__ACGTAAAGAA__AGACCTGGCGGGCC
13._PA_137_[PER]
__ACGTAAAGAA__AGACCTGGCGGGCC
14._PA_137_[PER]
__ACGTAAAGAA__AGACCTGGCGGGCC
15._PA_137_[PER]
__ACGTAAAGAA__AGACCTGGCGGGCC
16._PA_137_[PER]
__ACGTAAAGAA__AGACCTGGCGGGCC
17._PA_137_[PER]
__ACGTAAAGAA__AGACCTGGCGGGCC
18._PA_137_[PER]
__ACGTAAAGAA__AGACCTGGCGGGCC
19._PA_137_[PER]
__ACGTAAAGAA__AGACCTGGCGGGCC
20._RUQ_36
__ACGTACAGAA__AGACCTGGCGGTCC
21._GC-05-009-1-09
CCACGTAAAGAACCAGACCTGGCGGGCC
22._GC-05-009-1-09
CCACGTAAAGAACCAGACCTGGCGGGCC
23._GC-05-009-1-09
CCACGTAAAGAACCAGACCTGGCGGGCC
24._GC-05-009-1-09
CCACGTAAAGAACCAGACCTGGCGGGCC
25._GC-05-009-1-09
CCACGTAAAGAACCAGACCTGGCGGGCC
26._GC-05-117-3-19
CCACGTAAAGAACCAGACCTGGCGGGCC
27._GC-05-117-3-19
CCACGTAAAGAACCAGACCTGGCGGGCC
28._GC-05-117-3-19
CCACGTAAAGAACCAGACCTGGCGGGCC
29._GC-05-117-3-19
CCACGTAAAGAACCAGACCTGGCGGGCC
30._GC-05-117-3-19
CCACGTAAAGAACCAGACCTGGCGGGCC
31._RUQ_1081
__AC____AG______AC____CGGG__
32._RUQ_36
__AC____AG______AA____CGGG__
33._RUQ_36
CCACACACAGAAGG__AC__CCCGCCGG
34._MITC-000400
CCACACACAGAAGG__AC__CCCGCCGG
35._PA_137_[PER]_Fld#_201_Plt#_2
CCACACACAGAAGG__AC__CCCGCCGG
 15161718192021       
_Input profile
GGAGCTGGGGTTCTX_XX_XX_XX_XX_XX_XX_X
1._RUQ_36
__AG________CTX_XX_XX_XX_XX_XX_XX_X
2._RUQ_1081
__AG________CTX_XX_XX_XX_XX_XX_XX_X
3._RUQ_1081
__AG________CTX_XX_XX_XX_XX_XX_XX_X
4._PA_137_[PER]
__AG________CTX_XX_XX_XX_XX_XX_XX_X
5._PA_137_[PER]
__AG________CTX_XX_XX_XX_XX_XX_XX_X
6._PA_137_[PER]
__AG________CTX_XX_XX_XX_XX_XX_XX_X
7._PA_137_[PER]
__AG________CTX_XX_XX_XX_XX_XX_XX_X
8._PA137[PER]
________GGTT__X_XX_XX_XX_XX_XX_XX_X
9._RUQ_1081
__AGTTGGGGTTCTX_XX_XX_XX_XX_XX_XX_X
10._PA_137_[PER]
__AG________CTX_XX_XX_XX_XX_XX_XX_X
11._PA_137_[PER]
__AG________CTX_XX_XX_XX_XX_XX_XX_X
12._PA_137_[PER]
__AG________CTX_XX_XX_XX_XX_XX_XX_X
13._PA_137_[PER]
__AG________CTX_XX_XX_XX_XX_XX_XX_X
14._PA_137_[PER]
__AG________CTX_XX_XX_XX_XX_XX_XX_X
15._PA_137_[PER]
__AG________CTX_XX_XX_XX_XX_XX_XX_X
16._PA_137_[PER]
__AG________CTX_XX_XX_XX_XX_XX_XX_X
17._PA_137_[PER]
__AG________CTX_XX_XX_XX_XX_XX_XX_X
18._PA_137_[PER]
__AG________CTX_XX_XX_XX_XX_XX_XX_X
19._PA_137_[PER]
__AG________CTX_XX_XX_XX_XX_XX_XX_X
20._RUQ_36
__AG________CTX_XX_XX_XX_XX_XX_XX_X
21._GC-05-009-1-09
GGAGTTGGGGTTCTX_XX_XX_XX_XX_XX_XX_X
22._GC-05-009-1-09
GGAGTTGGGGTTCTX_XX_XX_XX_XX_XX_XX_X
23._GC-05-009-1-09
GGAGTTGGGGTTCTX_XX_XX_XX_XX_XX_XX_X
24._GC-05-009-1-09
GGAGTTGGGGTTCTX_XX_XX_XX_XX_XX_XX_X
25._GC-05-009-1-09
GGAGTTGGGGTTCTX_XX_XX_XX_XX_XX_XX_X
26._GC-05-117-3-19
GGAGTTGGGGTTCTX_XX_XX_XX_XX_XX_XX_X
27._GC-05-117-3-19
GGAGTTGGGGTTCTX_XX_XX_XX_XX_XX_XX_X
28._GC-05-117-3-19
GGAGTTGGGGTTCTX_XX_XX_XX_XX_XX_XX_X
29._GC-05-117-3-19
GGAGTTGGGGTTCTX_XX_XX_XX_XX_XX_XX_X
30._GC-05-117-3-19
GGAGTTGGGGTTCTX_XX_XX_XX_XX_XX_XX_X
31._RUQ_1081
GGAGTT________X_XX_XX_XX_XX_XX_XX_X
32._RUQ_36
GGAGTT________X_XX_XX_XX_XX_XX_XX_X
33._RUQ_36
GGAG__CCGG__AGX_XX_XX_XX_XX_XX_XX_X
34._MITC-000400
GGAG__CCGG__AGX_XX_XX_XX_XX_XX_XX_X
35._PA_137_[PER]_Fld#_201_Plt#_2
GGAG__CCGG__AGX_XX_XX_XX_XX_XX_XX_X

Input profile: PA_137_[PER] RUQ_36

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._PA_137_[PER] RUQ_36

identical
14 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._PA_137_[PER] RUQ_1081

identical
14 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

3._PA_137_[PER] RUQ_1081

identical
14 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

4._PA_137_[PER]

identical
14 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row 7 C0181 28
 Dapeng Zhang, 2016

5._PA_137_[PER]

identical
14 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D430
 Dapeng Zhang, 2016

6._PA_137_[PER]

identical
14 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2016

7._PA_137_[PER]

identical
13 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2014

8._PA_137_[PER] PA137[PER]

identical
9 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

9._PA_137_[PER] RUQ_1081

97.5 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

10._PA_137_[PER]

96.4 %
14 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 3
 Dapeng Zhang, 2016

11._PA_137_[PER]

96.4 %
14 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

12._PA_137_[PER]

96.4 %
14 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 4
 Dapeng Zhang, 2016

13._PA_137_[PER]

96.4 %
14 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 5
 Dapeng Zhang, 2016

14._PA_137_[PER]

96.4 %
14 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 1 > FP
 Dapeng Zhang, 2016

15._PA_137_[PER]

96.4 %
14 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 3 > FP
 Dapeng Zhang, 2016

16._PA_137_[PER]

96.4 %
14 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 2
 Dapeng Zhang, 2016

17._PA_137_[PER]

96.4 %
14 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 4
 Dapeng Zhang, 2016

18._PA_137_[PER]

96.4 %
14 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 5
 Dapeng Zhang, 2016

19._PA_137_[PER]

96.4 %
14 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 1 > FP
 Dapeng Zhang, 2016

20._PA_137_[PER] RUQ_36

96.4 %
14 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

21._PA_137_[PER] GC-05-009-1-09

95.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

22._PA_137_[PER] GC-05-009-1-09

95.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

23._PA_137_[PER] GC-05-009-1-09

95.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

24._PA_137_[PER] GC-05-009-1-09

95.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

25._PA_137_[PER] GC-05-009-1-09

95.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

26._PA_137_[PER] GC-05-117-3-19

95.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

27._PA_137_[PER] GC-05-117-3-19

95.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

28._PA_137_[PER] GC-05-117-3-19

95.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

29._PA_137_[PER] GC-05-117-3-19

95.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

30._PA_137_[PER] GC-05-117-3-19

95.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

31._PA_137_[PER] RUQ_1081

93.8 %
8 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

32._PA_137_[PER] RUQ_36

87.5 %
8 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

33._PA_137_[PER] RUQ_36

58.8 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

34._PA_137_[PER] MITC-000400

58.8 %
17 shared markers

USDA-SHRS, United States of America
 Mars, 2018

35._PA_137_[PER] PA_137_[PER]_Fld#_201_Plt#_2

58.8 %
17 shared markers

USDA-TARS, United States of America
Location: Field: 201, Tree: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP90 2TcSNP144 3TcSNP150 4TcSNP193 5TcSNP230
6TcSNP372 7TcSNP448 8TcSNP469 9TcSNP529 10TcSNP534
11TcSNP560 12TcSNP577 13TcSNP723 14TcSNP891 15TcSNP899
16TcSNP998 17TcSNP999 18TcSNP1063 19TcSNP1111 20TcSNP1126
21TcSNP1442