SNP Profiles of PA 137 [PER]   View Data

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 Key

 1234567891011121314
_Input profile
TTCCACGTCTGGACCCAGCCGGGGAACC
1._RUQ_1081
____ACGTCT__ACCCAGCC____AA__
2._PA_137_[PER]
____ACGTCT__ACCCAGCC____AA__
3._PA_137_[PER]
____ACGTCT__AC__AGCC____AA__
4._PA_137_[PER]
____ACGTCT__AC__AGCC____AA__
5._PA_137_[PER]
____ACGTCT__AC__AGCC____AA__
6._RUQ_1081
____AC__________AG__GG______
7._GC-05-009-1-09
TTCCACGTCTGGAACCAGCCGGGGAACC
8._GC-05-009-1-09
TTCCACGTCTGGAACCAGCCGGGGAACC
9._GC-05-009-1-09
TTCCACGTCTGGAACCAGCCGGGGAACC
10._GC-05-009-1-09
TTCCACGTCTGGAACCAGCCGGGGAACC
11._GC-05-117-3-19
TTCCACGTCTGGAACCAGCCGGGGAACC
12._GC-05-117-3-19
TTCCACGTCTGGAACCAGCCGGGGAACC
13._GC-05-117-3-19
TTCCACGTCTGGAACCAGCCGGGGAACC
14._GC-05-117-3-19
TTCCACGTCTGGAACCAGCCGGGGAACC
15._GC-05-117-3-19
TTCCACGTCTGGAACCAGCCGGGGAACC
16._GC-05-009-1-09
__CCACGTCTGGAACCAGCCGGGGAACC
17._PA_137_[PER]
____ACGTCT__AACCAGCC____AA__
18._PA_137_[PER]
____ACGTCT__AACCAGCC____AA__
19._PA_137_[PER]
____ACGTCT__AACCAGCC____AA__
20._PA_137_[PER]
____ACGTCT__AACCAGCC____AA__
21._PA_137_[PER]
____ACGTCT__AACCAGCC____AA__
22._PA_137_[PER]
____ACGTCT__AACCAGCC____AA__
23._PA_137_[PER]
____ACGTCT__AACCAGCC____AA__
24._PA_137_[PER]
____ACGTCT__AACCAGCC____AA__
25._PA_137_[PER]
____ACGTCT__AACCAGCC____AA__
26._PA_137_[PER]
____ACGTCT__AACCAGCC____AA__
27._RUQ_36
____ACGTCT__ACCCAGCC____AA__
28._RUQ_1081
____ACGTCT__ACCCAGCC____AA__
29._RUQ_36
__CCACGT____AC__AG______AACC
30._RUQ_36
____AC__________AG__GG______
31._RUQ_36
____ACGTCT__ACCGAG______AA__
32._PA137[PER]
____AC__CTGGACGGAG____GGAACC
33._RUQ_36
AACCACACAGGGACGGAGGGGGGGAAGG
34._MITC-000400
AACCACACAGGGACGGAGGGGGGGAAGG
35._PA_137_[PER]_Fld#_201_Plt#_2
AACCACACAGGGACGGAGGGGGGGAAGG
 1516171819202122232425262728
_Input profile
AGACCTGGCGCCTTTTCCGGGGTTAAGG
1._RUQ_1081
AGACCTGGCGCC__TT__GG______GG
2._PA_137_[PER]
AGACCTGGCGCC__TT__GG______GG
3._PA_137_[PER]
AGACCTGGCGCC__TT__________GG
4._PA_137_[PER]
AGACCTGGCGCC__TT__GG______GG
5._PA_137_[PER]
AGACCTGGCGCC__TT__GG______GG
6._RUQ_1081
__AC____CGCCTT__CCGGGG__AAGG
7._GC-05-009-1-09
AGACCTGGCGCCTTTTCCGGGGTTAAGG
8._GC-05-009-1-09
AGACCTGGCGCCTTTTCCGGGGTTAAGG
9._GC-05-009-1-09
AGACCTGGCGCCTTTTCCGGGGTTAAGG
10._GC-05-009-1-09
AGACCTGGCGCCTTTTCCGGGGTTAAGG
11._GC-05-117-3-19
AGACCTGGCGCCTTTTCCGGGGTTAAGG
12._GC-05-117-3-19
AGACCTGGCGCCTTTTCCGGGGTTAAGG
13._GC-05-117-3-19
AGACCTGGCGCCTTTTCCGGGGTTAAGG
14._GC-05-117-3-19
AGACCTGGCGCCTTTTCCGGGGTTAAGG
15._GC-05-117-3-19
AGACCTGGCGCCTTTTCCGGGGTTAAGG
16._GC-05-009-1-09
AGACCTGGCGCCTTTTCCGGGGTTAAGG
17._PA_137_[PER]
AGACCTGGCGCC__TT__GG______GG
18._PA_137_[PER]
AGACCTGGCGCC__TT__GG______GG
19._PA_137_[PER]
AGACCTGGCGCC__TT__GG______GG
20._PA_137_[PER]
AGACCTGGCGCC__TT__GG______GG
21._PA_137_[PER]
AGACCTGGCGCC__TT__GG______GG
22._PA_137_[PER]
AGACCTGGCGCC__TT__GG______GG
23._PA_137_[PER]
AGACCTGGCGCC__TT__GG______GG
24._PA_137_[PER]
AGACCTGGCGCC__TT__GG______GG
25._PA_137_[PER]
AGACCTGGCGCC__TT__GG______GG
26._PA_137_[PER]
AGACCTGGCGCC__TT__GG______GG
27._RUQ_36
AGACCTGGCGCC__CT__GG______GG
28._RUQ_1081
AGACCTGGCGCC__CT__GG______GG
29._RUQ_36
AGACCTGGCG________GG________
30._RUQ_36
__AA____CGCCTT__CCGGGG__AAGG
31._RUQ_36
AGACCTGGCG____TT__GT________
32._PA137[PER]
________CGCCTT____________CC
33._RUQ_36
__AC__CCCGCCAAAA__CCGGAAAACC
34._MITC-000400
__AC__CCCGCCAAAA__CCGGAAAACC
35._PA_137_[PER]_Fld#_201_Plt#_2
__AC__CCCGCCAAAA__CCGGAAAACC
 2930313233343536373839404142
_Input profile
CCCCAGTTCCGGGGTTTTCCCCCTCCGG
1._RUQ_1081
__CCAG__CC______TT____CTCCGG
2._PA_137_[PER]
__CCAG__CC______TT____CTCCGG
3._PA_137_[PER]
CCCCAG__CC______TT____CTCCGG
4._PA_137_[PER]
__CCAG__CC______TT____CTCCGG
5._PA_137_[PER]
__CCAG__CC______TT____CTCCGG
6._RUQ_1081
____AGTT________TT______CC__
7._GC-05-009-1-09
CCCCAGTTCCGGGGTTTT__CCCTCCGG
8._GC-05-009-1-09
CCCCAGTTCCGGGGTTTT__CCCTCCGG
9._GC-05-009-1-09
CCCCAGTTCCGGGGTTTT__CCCTCCGG
10._GC-05-009-1-09
CCCCAGTTCCGGGGTTTT__CCCTCCGG
11._GC-05-117-3-19
CCCCAGTTCCGGGGTTTT__CCCTCCGG
12._GC-05-117-3-19
CCCCAGTTCCGGGGTTTT__CCCTCCGG
13._GC-05-117-3-19
CCCCAGTTCCGGGGTTTT__CCCTCCGG
14._GC-05-117-3-19
CCCCAGTTCCGGGGTTTT__CCCTCCGG
15._GC-05-117-3-19
CCCCAGTTCCGGGGTTTT__CCCTCCGG
16._GC-05-009-1-09
CCCCAGTTCCGGGGTTTT__CCCTCCGG
17._PA_137_[PER]
__CCAG__CC______TT____CTCCGG
18._PA_137_[PER]
__CCAG__CC______TT____CTCCGG
19._PA_137_[PER]
__CCAG__CC______TT____CTCCGG
20._PA_137_[PER]
__CCAG__CC______TT____CTCCGG
21._PA_137_[PER]
__CCAG__CC______TT____CTCCGG
22._PA_137_[PER]
__CCAG__CC______TT____CTCCGG
23._PA_137_[PER]
__CCAG__CC______TT____CTCCGG
24._PA_137_[PER]
__CCAG__CC______TT____CTCCGG
25._PA_137_[PER]
__CCAG__CC______TT____CTCCGG
26._PA_137_[PER]
__CCAG__CC______TT____CTCCGG
27._RUQ_36
__CCAG__CC______TT____CTCCGG
28._RUQ_1081
__CCAG__CC______TT____CTCCGG
29._RUQ_36
__CCAGCT__GGGGTT______CT____
30._RUQ_36
____AGTT________TT______CC__
31._RUQ_36
__CCAG__________GT____CTCGAG
32._PA137[PER]
GGCC____CC__GGTT____CC__GG__
33._RUQ_36
__GGAG__GGCCGG__AAGGGGAGGGGG
34._MITC-000400
__GGAG__GGCCGG__AAGGGGAGGGGG
35._PA_137_[PER]_Fld#_201_Plt#_2
__GGAG__GGCCGG__AAGGGGAGGGGG

Input profile: PA_137_[PER] RUQ_1081

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._PA_137_[PER] RUQ_1081

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._PA_137_[PER]

identical
24 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row 7 C0181 28
 Dapeng Zhang, 2016

3._PA_137_[PER]

identical
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2014

4._PA_137_[PER]

identical
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D430
 Dapeng Zhang, 2016

5._PA_137_[PER]

identical
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2016

6._PA_137_[PER] RUQ_1081

identical
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

7._PA_137_[PER] GC-05-009-1-09

98.8 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._PA_137_[PER] GC-05-009-1-09

98.8 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

9._PA_137_[PER] GC-05-009-1-09

98.8 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

10._PA_137_[PER] GC-05-009-1-09

98.8 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

11._PA_137_[PER] GC-05-117-3-19

98.8 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

12._PA_137_[PER] GC-05-117-3-19

98.8 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._PA_137_[PER] GC-05-117-3-19

98.8 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._PA_137_[PER] GC-05-117-3-19

98.8 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

15._PA_137_[PER] GC-05-117-3-19

98.8 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

16._PA_137_[PER] GC-05-009-1-09

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

17._PA_137_[PER]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 3
 Dapeng Zhang, 2016

18._PA_137_[PER]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

19._PA_137_[PER]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 4
 Dapeng Zhang, 2016

20._PA_137_[PER]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 5
 Dapeng Zhang, 2016

21._PA_137_[PER]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 1 > FP
 Dapeng Zhang, 2016

22._PA_137_[PER]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 3 > FP
 Dapeng Zhang, 2016

23._PA_137_[PER]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 2
 Dapeng Zhang, 2016

24._PA_137_[PER]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 4
 Dapeng Zhang, 2016

25._PA_137_[PER]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 5
 Dapeng Zhang, 2016

26._PA_137_[PER]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 1 > FP
 Dapeng Zhang, 2016

27._PA_137_[PER] RUQ_36

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

28._PA_137_[PER] RUQ_1081

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

29._PA_137_[PER] RUQ_36

97.5 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

30._PA_137_[PER] RUQ_36

96.9 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

31._PA_137_[PER] RUQ_36

87.5 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

32._PA_137_[PER] PA137[PER]

80 %
20 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

33._PA_137_[PER] RUQ_36

44.4 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

34._PA_137_[PER] MITC-000400

44.4 %
36 shared markers

USDA-SHRS, United States of America
 Mars, 2018

35._PA_137_[PER] PA_137_[PER]_Fld#_201_Plt#_2

44.4 %
36 shared markers

USDA-TARS, United States of America
Location: Field: 201, Tree: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484