SNP Profiles of PA 120 [PER] View Data

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	CC	GG	CT	GG	AC	CC	AA	CC	GG	GG	AA	CC
1._RUQ_852	__	__	CC	__	__	__	__	__	AA	__	GG	__	__	__
2._RUQ_852B	__	__	CC	__	__	__	__	__	AA	__	GG	__	__	__
3._PA120[PER]	__	__	AA	__	TT	GG	AC	GG	AA	__	__	GG	AA	CC
4._RUQ_852	AA	CC	CC	CC	AG	GG	AC	GG	AA	GG	GG	GG	AA	GG
5._PA_120_[PER]_Fld#_172_Plt#_5	AA	CC	CC	CC	GG	GG	AC	GG	AG	GG	GG	GG	AA	GG
6._MITC-000291	AA	CC	AC	AC	AG	GG	AA	GG	AG	AG	GG	GG	AA	CG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	CC	TT	GG	CC	TT	TT	CT	GG	GG	TT	AA	GG
1._RUQ_852	__	AA	__	__	GG	CC	TT	__	CT	GG	GG	__	AA	GG
2._RUQ_852B	__	AA	__	__	GG	CC	__	__	CT	GG	GG	__	AA	GG
3._PA120[PER]	__	__	__	__	CG	CC	CC	__	__	__	__	__	__	CG
4._RUQ_852	__	AA	__	AA	GG	CC	AA	AA	__	CC	GG	AA	AA	CC
5._PA_120_[PER]_Fld#_172_Plt#_5	__	AC	__	AC	CG	CC	AA	AA	__	CC	AG	AA	AA	CC
6._MITC-000291	__	CC	__	AC	CC	AA	GG	AG	__	CC	GG	AA	AC	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41
_Input profile	CC	CC	GG	CC	GG	GG	TT	TT	CC	CT	CT	CG	GG	X_X
1._RUQ_852	__	__	GG	__	__	__	__	TT	__	__	__	CG	__	X_X
2._RUQ_852B	__	__	GG	__	__	__	__	TT	__	__	__	CG	__	X_X
3._PA120[PER]	GG	CT	__	CT	__	GG	TT	__	__	CT	__	GG	__	X_X
4._RUQ_852	__	GG	GG	GG	CC	GG	__	AA	GG	AG	AG	CG	GG	X_X
5._PA_120_[PER]_Fld#_172_Plt#_5	__	GG	AG	GG	CC	GG	__	AA	AG	GG	AG	CG	GG	X_X
6._MITC-000291	__	GG	AA	GG	CC	GG	__	AA	AA	GG	AA	CC	AA	X_X

Input profile: PA_120_[PER] RUQ_852

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._PA_120_[PER] RUQ_852

identical
15 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

View Data

Par
0.995

2._PA_120_[PER] RUQ_852B

identical
14 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

3._PA_120_[PER] PA120[PER]

65 %
20 shared markers

View View all Clone Any

Center for Forestry Research and Technology Transfer, Vietnam

Location: CEFORTT

Jocelyn De Wever et al., 2019

4._PA_120_[PER] RUQ_852

47.2 %
36 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Mars, 2018

5._PA_120_[PER] PA_120_[PER]_Fld#_172_Plt#_5

40.3 %
36 shared markers

View View all Clone Any

USDA-TARS, United States of America

Location: Field: 172, Tree: 5

Notes: TARS_Cacao_collection

Mars, 2018

6._PA_120_[PER] MITC-000291

30.6 %
36 shared markers

View View all Clone Any

USDA-SHRS, United States of America

Mars, 2018

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP1060	33	TcSNP1063	34	TcSNP1111	35	TcSNP1126
36	TcSNP1253	37	TcSNP1309	38	TcSNP1439	39	TcSNP1442	40	TcSNP1458
41	TcSNP1484

SNP Profiles of PA 120 [PER] View Data

Show/Hide Profiles

Input profile: PA_120_[PER] RUQ_852

1._PA_120_[PER] RUQ_852

identical 15 shared markers

2._PA_120_[PER] RUQ_852B

identical 14 shared markers

3._PA_120_[PER] PA120[PER]

65 % 20 shared markers

4._PA_120_[PER] RUQ_852

47.2 % 36 shared markers

5._PA_120_[PER] PA_120_[PER]_Fld#_172_Plt#_5

40.3 % 36 shared markers

6._PA_120_[PER] MITC-000291

30.6 % 36 shared markers

identical
15 shared markers

identical
14 shared markers

65 %
20 shared markers

47.2 %
36 shared markers

40.3 %
36 shared markers

30.6 %
36 shared markers