SNP Profiles of NA 33   View Data

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 Key

 1234567891011121314
_Input profile
TTCCCCGGCCGGACCGAGCTGGGGAACC
1._RUQ_1577
____CC__________AG__GG______
2._RUQ_1577
____CCGGCC__ACCGAGCT____AA__
3._NA_33
____CCGGCC__ACGGAGCT____AA__
4._GC-01-6-1-06
TTCCACGGCTGGACCCGGCTGGGGATCG
5._GC-01-6-1-06
TTCCACGGCTGGACCCGGCTGGGGATCG
6._GC-01-006-1-06
TTCCACGGCTGGACCCGGCTGGGGATCG
7._GC-01-006-1-06
TTCCACGGCTGGACCCGGCTGGGGATCG
8._GC-01-006-1-06
TTCCACGGCTGGACCCGGCTGGGGATCG
9._GC-01-006-1-06
TTCCACGGCTGGACCCGGCTGGGGATCG
10._GC-01-006-1-06
TTCCACGGCTGGACCCGGCTGGGGATCG
11._GC-01-006-1-06
TTCCACGGCTGGACCCGGCTGGGGATCG
12._GC-01-006-1-06
TTCCACGGCTGGACCCGGCTGGGGATCG
13._GC-01-006-1-06
TTCCACGGCTGGACCCGGCTGGGGATCG
14._GC-01-6-1-06
__CCACGGCTGGACCCGGCTGGGGATCG
15._GC-01-6-1-06
TTCCACGGCTGGACCCGGCTGGGGATCG
16._NA_33
____ACGGCT__ACCCGGCT____AT__
17._NA_33
____ACGGCT__ACCCGGCT____AT__
18._NA_33
____ACGGCT__ACCCGGCT____AT__
19._NA_33
____ACGGCT__ACCCGGCT____AT__
20._NA_33
____ACGGCT__ACCCGGCT____AT__
21._NA_33
____ACGGCT__ACCCGGCT____AT__
22._NA_33
____ACGGCT__ACCCGGCT____AT__
23._NA_33
____ACGGCT__ACCCGGCT____AT__
24._NA_33
____ACGGCT__ACCCGGCT____AT__
25._NA_33
____ACGGCT__ACCCGGCT____AT__
26._NA_33
____ACGGCT__ACCCGGCT____AT__
27._NA_33
____ACGGCT__AACGAGTT____AT__
28._NA_33
____ACGGCT__ACCCGGCT____AT__
29._NA_33
____ACGGCT__ACCCGGCT____AT__
30._NA_33
____ACGGCT__ACCCGGCT____AT__
31._NA33
____AC__CTGGACGGGG____GGATCG
32._RUQ_1577
AACCCCCCGGGGACCGAGAGGGGGAAGG
33._NA_33
AACCACCCAGGGACGGGGAGGGGGATCG
34._GC-01-6-1-6
AACCACCCAGGGACGGGGAGGGGGATCG
35._MITC-000715
AACCACCCAGGGACGGGGAGGGGGATCG
 1516171819202122232425262728
_Input profile
AACCCTGGGGAACCCTTTGGAGTTCCCG
1._RUQ_1577
__CC____GGAACC__TTGGAG__CCCG
2._RUQ_1577
AACCCTGGGGAA__CT__GG______CG
3._NA_33
AACCCTGGGGAA__CT__GG______CG
4._GC-01-6-1-06
AGCCCTGGGGACCCCTCTGGGGTTCCGG
5._GC-01-6-1-06
AGCCCTGGGGACCCCTCTGGGGTTCCGG
6._GC-01-006-1-06
AGCCCTGGGGACCCCTCTGGGGTTCCGG
7._GC-01-006-1-06
AGCCCTGGGGACCCCTCTGGGGTTCCGG
8._GC-01-006-1-06
AGCCCTGGGGACCCCTCTGGGGTTCCGG
9._GC-01-006-1-06
AGCCCTGGGGACCCCTCTGGGGTTCCGG
10._GC-01-006-1-06
AGCCCTGGGGACCCCTCTGGGGTTCCGG
11._GC-01-006-1-06
AGCCCTGGGGACCCCTCTGGGGTTCCGG
12._GC-01-006-1-06
AGCCCTGGGGACCCCTCTGGGGTTCCGG
13._GC-01-006-1-06
AGCCCTGGGGACCCCTCTGGGGTTCCGG
14._GC-01-6-1-06
AGCCCTGGGGACCCCTCTGGGGTTCCGG
15._GC-01-6-1-06
AGCCCTGGGGACCCCTCTGGGGTTCCGG
16._NA_33
AGCCCTGGGGAC__CT__GG______GG
17._NA_33
AGCCCTGGGGAC__CT__GG______GG
18._NA_33
AGCCCTGGGGAC__CT__GG______GG
19._NA_33
AGCCCTGGGGAC__CT__GG______GG
20._NA_33
AGCCCTGGGGAC__CT__GG______GG
21._NA_33
AGCCCTGGGGAC__CT__GG______GG
22._NA_33
AGCCCTGGGGAC__CT__GG______GG
23._NA_33
AGCCCTGGGGAC__CT__GG______GG
24._NA_33
AGCCCTGGGGAC__CT__GG______GG
25._NA_33
AGCCCTGGGGAC__CT__GG______GG
26._NA_33
AGCCCTGGGGAC__CT__GG______GG
27._NA_33
AACCCTGGGGAA__CT__GG______CC
28._NA_33
AGCCCTGGGGAC__CT__GG______GG
29._NA_33
AGCCCTGGGGAC__CT__GG______GG
30._NA_33
AGCCCTGGGGAC__CT__GG______GG
31._NA33
________GGACCC____________CC
32._RUQ_1577
__CC__CCGGAAGGAG__CCAGAACCCG
33._NA_33
__CC__CCGGACGGAG__CCGGAACCCC
34._GC-01-6-1-6
__CC__CCGGACGGAG__CCGGAACCCC
35._MITC-000715
__CC__CCGGACGGAG__CCGGAACCCC
 2930313233343536373839404142
_Input profile
CCCCAGCCCCGGAGTTGTTTCCTTCCAA
1._RUQ_1577
____AGCC________GT______CC__
2._RUQ_1577
__CCAG__CC______GT____TTCCAG
3._NA_33
__CCAG__CC______GT____TTCCAA
4._GC-01-6-1-06
CGCTAGCCCCGGAGTTGTTTCCTTCCAG
5._GC-01-6-1-06
CGCTAGCCCCGGAGTTGTTTCCTTCCAG
6._GC-01-006-1-06
CGCTAGCCCCGGAGTTGTTTCCTTCCAG
7._GC-01-006-1-06
CGCTAGCCCCGGAGTTGTTTCCTTCCAG
8._GC-01-006-1-06
CGCTAGCCCCGGAGTTGTTTCCTTCCAG
9._GC-01-006-1-06
CGCTAGCCCCGGAGTTGTTTCCTTCCAG
10._GC-01-006-1-06
CGCTAGCCCCGGAGTTGTTTCCTTCCAG
11._GC-01-006-1-06
CGCTAGCCCCGGAGTTGTTTCCTTCCAG
12._GC-01-006-1-06
CGCTAGCCCCGGAGTTGTTTCCTTCCAG
13._GC-01-006-1-06
CGCTAGCCCCGGAGTTGTTTCCTTCCAG
14._GC-01-6-1-06
CGCTAGCCCCGGAGTTGTTTCCTTCCAG
15._GC-01-6-1-06
CGCTAGCCCCGGAGTT__TTCCTTCCAG
16._NA_33
__CTAG__CC______GT____TTCCAG
17._NA_33
__CTAG__CC______GT____TTCCAG
18._NA_33
__CTAG__CC______GT____TTCCAG
19._NA_33
__CTAG__CC______GT____TTCCAG
20._NA_33
__CTAG__CC______GT____TTCCAG
21._NA_33
__CTAG__CC______GT____TTCCAG
22._NA_33
__CTAG__CC______GT____TTCCAG
23._NA_33
__CTAG__CC______GT____TTCCAG
24._NA_33
__CTAG__CC______GT____TTCCAG
25._NA_33
__CTAG__CC______GT____TTCCAG
26._NA_33
__CTAG__CC______GT____TTCCAG
27._NA_33
__CCAG__CT______TT____TTCGAG
28._NA_33
__CTAG__CC______GT____TTCCAG
29._NA_33
__CTAG__CC______GT____TTCCAG
30._NA_33
__CTAG__CC____________TTCCAG
31._NA33
CGCT____CC__AGTT____CC__GG__
32._RUQ_1577
__GGAG__GGCCAG__ACAAGGAAGGAA
33._NA_33
__AGAG__GGCCAG__ACAAGGAAGGAG
34._GC-01-6-1-6
__AGAG__GGCCAG__ACAAGGAAGGAG
35._MITC-000715
__AGAG__GGCCAG__ACAAGGAAGGAG

Input profile: NA_33 RUQ_1577

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._NA_33 RUQ_1577

identical
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._NA_33 RUQ_1577

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

3._NA_33

97.9 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A D371 T2
 Dapeng Zhang, 2016

4._NA_33 GC-01-6-1-06

83.3 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL3
Notes: PL3 FP2
 Mars, 2018

5._NA_33 GC-01-6-1-06

83.3 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL14
Notes: PL14 FP3
 Mars, 2018

6._NA_33 GC-01-006-1-06

83.3 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP5
 Mars, 2018

7._NA_33 GC-01-006-1-06

83.3 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP6
 Mars, 2018

8._NA_33 GC-01-006-1-06

83.3 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP11
 Mars, 2018

9._NA_33 GC-01-006-1-06

83.3 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP12
 Mars, 2018

10._NA_33 GC-01-006-1-06

83.3 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP8
 Mars, 2018

11._NA_33 GC-01-006-1-06

83.3 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP9
 Mars, 2018

12._NA_33 GC-01-006-1-06

83.3 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP13
 Mars, 2018

13._NA_33 GC-01-006-1-06

83.3 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16 > FP14
 Mars, 2018

14._NA_33 GC-01-6-1-06

82.9 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL12
Notes: PL12 FP4
 Mars, 2018

15._NA_33 GC-01-6-1-06

82.9 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: PL9
Notes: PL9 FP1
 Mars, 2018

16._NA_33

79.2 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 14 > F
 Dapeng Zhang, 2016

17._NA_33

79.2 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 1 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

18._NA_33

79.2 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 10 > F
 Dapeng Zhang, 2016

19._NA_33

79.2 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 11 > F
 Dapeng Zhang, 2016

20._NA_33

79.2 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 12 > F
 Dapeng Zhang, 2016

21._NA_33

79.2 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 15 > F
 Dapeng Zhang, 2016

22._NA_33

79.2 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 16 > F
 Dapeng Zhang, 2016

23._NA_33

79.2 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 2 > FP
 Dapeng Zhang, 2016

24._NA_33

79.2 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 3 > FP
 Dapeng Zhang, 2016

25._NA_33

79.2 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 6 > FP
 Dapeng Zhang, 2016

26._NA_33

79.2 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 7 > FP
 Dapeng Zhang, 2016

27._NA_33

79.2 %
24 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: M6 18, 19
 Dapeng Zhang, 2016

28._NA_33

79.2 %
24 shared markers

Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 397 I-032
 Dapeng Zhang, 2016

29._NA_33

79.2 %
24 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Row 24 C0211 44
 Dapeng Zhang, 2016

30._NA_33

78.3 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1104 9 > FP
 Dapeng Zhang, 2016

31._NA_33 NA33

70 %
20 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

32._NA_33 RUQ_1577

50 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

33._NA_33

40.3 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: FP 4
 Mars, 2018

34._NA_33 GC-01-6-1-6

40.3 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 4, Tree: 1 > FP5
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

35._NA_33 MITC-000715

40.3 %
36 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484