SNP Profiles of NA 26   View Data

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 Key

 1234567891011121314
_Input profile
TTCCACGGCTGGAACGAGCTGGGGATCC
1._NA_26
____ACGGCT__AACGAGCT____AT__
2._NA_26
____ACGGCT__AACGAGCT____AT__
3._NA_26
____ACGGCT__AACGAGCT____AT__
4._NA_26
____ACGGCT__AACGAGCT____AT__
5._NA_26
____ACGGCT__AACGAGCT____AT__
6._RUQ_1230
____AC__________AG__GG______
7._RUQ_1230
____ACGGCT__AACGAGCT____AT__
8._GC-04-021-2-03
TTCCACGGCTGGAACGAGCTGGGGATCC
9._GC-04-021-2-03
TTCCACGGCTGGAACGAGCTGGGGATCC
10._GC-04-021-2-03
TTCCACGGCTGGAACGAGCTGGGGATCC
11._GC-04-021-2-03
TTCCACGGCTGGAACGAGCTGGGGATCC
12._GC-04-021-2-03
TTCCACGGCTGGAACGAGCTGGGGATCC
13._RUQ_1230
____AC__CTGGAACGAG____GGATCC
14._NA_26
____CCTTCT__ACGGAGCT____AT__
15._RUQ_1230
AACCACCCAGGGAACGAGAGGGGGATGG
16._MITC-000034
AACCACCCAGGGAACGAGAGGGGGATGG
 1516171819202122232425262728
_Input profile
AACCCTGGGGACCCCCTTGGGGTTCCCC
1._NA_26
AACCCTGGGGAC__CC__GG______CC
2._NA_26
AACCCTGGGGAC__CC__GG______CC
3._NA_26
AACCCTGGGGAC__CC__GG______CC
4._NA_26
AACCCTGGGGAC__CC__GG______CC
5._NA_26
AACCCTGGGGAC__CC__GG______CC
6._RUQ_1230
__CC____GGACCC__TTGGGG__CCCC
7._RUQ_1230
AACCCTGGGGAC__CC__GG______CC
8._GC-04-021-2-03
AACCCTGGGGACCCCCCCGGGGTTCCCC
9._GC-04-021-2-03
AACCCTGGGGACCCCCCCGGGGTTCCCC
10._GC-04-021-2-03
AACCCTGGGGACCCCCCCGGGGTTCCCC
11._GC-04-021-2-03
AACCCTGGGGACCCCCCCGGGGTTCCCC
12._GC-04-021-2-03
AACCCTGGGGACCCCCCCGGGGTTCCCC
13._RUQ_1230
________GGACCC____________GG
14._NA_26
AAACCCGGGGAC__CC__GG______CC
15._RUQ_1230
__CC__CCGGACGGGG__CCGGAACCGG
16._MITC-000034
__CC__CCGGACGGGG__CCGGAACCGG
 2930313233343536373839404142
_Input profile
CCCCAGCCCTGGGGTTTTTTCCTTCGAA
1._NA_26
__CCAG__CT______TT____TTCGAA
2._NA_26
__CCAG__CT______TT____TTCGAA
3._NA_26
__CCAG__CT______TT____TTCGAA
4._NA_26
__CCAG__CT______TT____TTCGAA
5._NA_26
__CCAG__CT______TT____TTCGAA
6._RUQ_1230
____AGCC________TT______CG__
7._RUQ_1230
__CCAG__CT______TT____TTCGAG
8._GC-04-021-2-03
CCCCAGCCCTGGGGTTTTTTCCTTCGAA
9._GC-04-021-2-03
CCCCAGCCCTGGGGTTTTTTCCTTCGAA
10._GC-04-021-2-03
CCCCAGCCCTGGGGTTTTTTCCTTCGAA
11._GC-04-021-2-03
CCCCAGCCCTGGGGTTTTTTCCTTCGAA
12._GC-04-021-2-03
CCCCAGCCCTGGGGTTTTTTCCTTCGAA
13._RUQ_1230
GGCC____CT__GGTT____CC__CG__
14._NA_26
__TTAA__CC______GT____TTCGAG
15._RUQ_1230
__GGAG__AGCCGG__AAAAGGAACGAA
16._MITC-000034
__GGAG__AGCCGG__AAAAGGAACGAA

Input profile: NA_26 RUQ_1230

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._NA_26

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 8 > FP
 Dapeng Zhang, 2016

2._NA_26

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 7 > FP
 Dapeng Zhang, 2016

3._NA_26

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 6 > FP
 Dapeng Zhang, 2016

4._NA_26

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 4 > FP
 Dapeng Zhang, 2016

5._NA_26

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

6._NA_26 RUQ_1230

identical
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

7._NA_26 RUQ_1230

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

8._NA_26 GC-04-021-2-03

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

9._NA_26 GC-04-021-2-03

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP2
 Mars, 2018

10._NA_26 GC-04-021-2-03

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP1
 Mars, 2018

11._NA_26 GC-04-021-2-03

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

12._NA_26 GC-04-021-2-03

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._NA_26 RUQ_1230

90 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

14._NA_26

72.9 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B E352 T5
 Dapeng Zhang, 2016

15._NA_26 RUQ_1230

50 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

16._NA_26 MITC-000034

50 %
36 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484