SNP Profiles of LV 20 [POU] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	CC	GT	CT	GG	AC	CC	AA	CC	GG	AG	AA	CC
1._RUQ_354	__	__	CC	__	__	__	__	__	AA	__	GG	__	__	__
2._LV_20_[POU]	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AA	__
3._LV_20_[POU]	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AA	__
4._LV_20_[POU]	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AA	__
5._LV_20_[POU]	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AA	__
6._RUQ_354	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AA	__
7._LV_20_[POU]	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AA	__
8._LV_20_[POU]	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AA	__
9._GC-04-027-2-09	TT	CC	CC	GT	CT	GG	AC	CC	AA	CC	GG	AG	AA	CC
10._GC-04-027-2-09	TT	CC	CC	GT	CT	GG	AC	CC	AA	CC	GG	AG	AA	CC
11._GC-04-027-2-09	TT	CC	CC	GT	CT	GG	AC	CC	AA	CC	GG	AG	AA	CC
12._GC-04-027-2-09	TT	CC	CC	GT	CT	GG	AC	CC	AA	CC	GG	AG	AA	CC
13._RUQ_354	AA	CC	CC	AC	AG	GG	AC	GG	AA	GG	GG	AG	AA	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	CC	TT	GT	CG	CC	CT	TT	CC	GT	AG	TT	AC	GG
1._RUQ_354	__	CC	__	__	CG	CC	CT	__	CC	GT	AG	__	AC	GG
2._LV_20_[POU]	AG	CC	TT	GT	CG	CC	__	TT	__	GT	__	__	__	GG
3._LV_20_[POU]	AG	CC	TT	GT	CG	CC	__	TT	__	GT	__	__	__	GG
4._LV_20_[POU]	AG	CC	TT	GT	CG	CC	__	TT	__	GT	__	__	__	GG
5._LV_20_[POU]	AG	CC	TT	GT	CG	CC	__	TT	__	GT	__	__	__	GG
6._RUQ_354	AG	CC	TT	GT	CG	CC	__	TT	__	GT	__	__	__	GG
7._LV_20_[POU]	AG	CC	TT	GT	CG	CC	__	TT	__	GT	__	__	__	GG
8._LV_20_[POU]	AG	CC	TT	GT	CG	CC	__	TT	__	GT	__	__	__	GG
9._GC-04-027-2-09	AG	CC	TT	GT	CG	CC	CT	TT	CT	GT	AG	TT	AC	GG
10._GC-04-027-2-09	AG	CC	TT	GT	CG	CC	CT	TT	CT	GT	AG	TT	AC	GG
11._GC-04-027-2-09	AG	CC	TT	GT	CG	CC	CT	TT	CT	GT	AG	TT	AC	GG
12._GC-04-027-2-09	AG	CC	TT	GT	CG	CC	CT	TT	CT	GT	AG	TT	AC	GG
13._RUQ_354	__	CC	__	AC	CG	CC	AG	AA	__	AC	AG	AA	AC	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CG	TT	AG	TT	CC	GG	AG	TT	GT	TT	CT	CT	CG	AG
1._RUQ_354	__	__	AG	TT	__	__	__	__	GT	__	__	__	CG	__
2._LV_20_[POU]	__	CT	AG	__	CC	__	__	__	GT	__	__	CT	CG	AG
3._LV_20_[POU]	__	CT	AG	__	CC	__	__	__	GT	__	__	CT	CG	AG
4._LV_20_[POU]	__	CT	AG	__	CC	__	__	__	GT	__	__	CT	CG	AG
5._LV_20_[POU]	__	CT	AG	__	CC	__	__	__	GT	__	__	CT	CG	AG
6._RUQ_354	__	CT	AG	__	CC	__	__	__	GT	__	__	CT	CG	AG
7._LV_20_[POU]	__	CT	AG	__	CC	__	__	__	GT	__	__	CT	CG	AG
8._LV_20_[POU]	__	CT	AG	__	CC	__	__	__	GT	__	__	CT	CG	AG
9._GC-04-027-2-09	CG	CT	AG	TT	CC	GG	AG	TT	GT	TT	CT	CT	CG	AG
10._GC-04-027-2-09	CG	CT	AG	TT	CC	GG	AG	TT	GT	TT	CT	CT	CG	AG
11._GC-04-027-2-09	CG	CT	AG	TT	CC	GG	AG	TT	GT	TT	CT	CT	CG	AG
12._GC-04-027-2-09	CG	CT	AG	TT	CC	GG	AG	TT	GT	TT	CT	CT	CG	AG
13._RUQ_354	__	AG	AG	__	GG	CC	AG	__	AC	AA	AG	AG	CG	AG

Input profile: LV_20_[POU] RUQ_354

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._LV_20_[POU] RUQ_354

identical
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.555 Nac
0.421

2._LV_20_[POU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4209 8 > FP

Dapeng Zhang, 2016

3._LV_20_[POU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4209 4 > FP

Dapeng Zhang, 2016

4._LV_20_[POU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4209 3

Dapeng Zhang, 2016

5._LV_20_[POU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4209 1

Dapeng Zhang, 2016

6._LV_20_[POU] RUQ_354

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

7._LV_20_[POU]

97.9 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper C 562

Dapeng Zhang, 2016

8._LV_20_[POU]

97.9 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper C 563

Dapeng Zhang, 2016

9._LV_20_[POU] GC-04-027-2-09

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

10._LV_20_[POU] GC-04-027-2-09

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

11._LV_20_[POU] GC-04-027-2-09

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

12._LV_20_[POU] GC-04-027-2-09

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP3

13._LV_20_[POU] RUQ_354

47.2 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP999	33	TcSNP1060	34	TcSNP1063	35	TcSNP1111
36	TcSNP1126	37	TcSNP1253	38	TcSNP1309	39	TcSNP1439	40	TcSNP1442
41	TcSNP1458	42	TcSNP1484