SNP Profiles of B 12 /1 [POU]   View Data

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 Key

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_Input profile
TTCCCCGTCTGGAACCAACCGGGGTTCC
1._B_12_/1_[POU]
__CCGTCT_AACCAACC__TT_
2._B_12_/1_[POU]
__CCGTCT_AACCAACC__TT_
3._B_12_/1_[POU]
__CCGTCT_AACCAACC__TT_
4._B_12_/1_[POU]
__CCGTCT_AACCAACC__TT_
5._B_12_/1_[POU]
__CCGTCT_AACCAACC__TT_
6._B_12_/1_[POU]
__CCGT__AACCAACC__TT_
7._RUQ_1541
__CCGTCT_AACCAACC__TT_
8._GC-05-093-2-44
TTCCCCGTCTGGAACCAACCGGGGTTCC
9._GC-05-093-2-44
TTCCCCGTCTGGAACCAACCGGGGTTCC
10._GC-05-093-2-44
TTCCCCGTCTGGAACCAACCGGGGTTCC
11._GC-05-093-2-44
TTCCCCGTCTGGAACCAACCGGGGTTCC
12._GC-05-093-2-44
TTCCCCGT_GGAACCAACCGGGGTTCC
13._RUQ_1541
__CC_____AA_GG___
14._RUQ_1541
AACCCCACAGGGAAGGAAGGGGGGTTGG
 1516171819202122232425262728
_Input profile
AACCCTGTGGCCCTCCTTGTAGTTCCGG
1._B_12_/1_[POU]
AACCCTGTGGCC_CC_GT___GG
2._B_12_/1_[POU]
AACCCTGTGGCC_CC_GT___GG
3._B_12_/1_[POU]
AACCCTGTGGCC_CC_GT___GG
4._B_12_/1_[POU]
AACCCTGTGGCC_CC_GT___GG
5._B_12_/1_[POU]
AACCCTGTGGCC_CC_GT___GG
6._B_12_/1_[POU]
AACCCTGTGGCC_CC_GT___GG
7._RUQ_1541
AACCCTGTGGCC_CC_GT___GG
8._GC-05-093-2-44
AACCCTGTGGCCCTCCTTGTAGTTCCGG
9._GC-05-093-2-44
AACCCTGTGGCCCTCCTTGTAGTTCCGG
10._GC-05-093-2-44
AACCCTGTGGCCCTCCTTGTAGTTCCGG
11._GC-05-093-2-44
AACCCTGTGGCCCTCCTTGTAGTTCCGG
12._GC-05-093-2-44
AACCCTGTGGCCCTCCTTGTAGTTCCGG
13._RUQ_1541
_CC__GGCCCT_TTGTAG_CCGG
14._RUQ_1541
_CC_ACGGCCAGGG_ACAGAACCCC
 2930313233343536373839404142
_Input profile
GGTTAGCCCCTTAGATGTCTTTCTCGGG
1._B_12_/1_[POU]
_TTAG_CC___GT__CTCGGG
2._B_12_/1_[POU]
_TTAG_CC___GT__CTCGGG
3._B_12_/1_[POU]
_TTAG_CC___GT__CTCGGG
4._B_12_/1_[POU]
_TTAG_CC___GT__CTCGGG
5._B_12_/1_[POU]
_TTAG_CC___GT__CTCGGG
6._B_12_/1_[POU]
_TTAG_CC___GT__CTCGGG
7._RUQ_1541
_CTAG_CC___GT__CTCGGG
8._GC-05-093-2-44
GGTTAGCTCCTTAGATGTTTTTCTCGGG
9._GC-05-093-2-44
GGTTAGCTCCTTAGATGTTTTTCTCGGG
10._GC-05-093-2-44
GGTTAGCTCCTTAGATGTTTTTCTCGGG
11._GC-05-093-2-44
GGTTAGCTCC_AGATGTTTTTCTCGGG
12._GC-05-093-2-44
GGTTAGCTCCTTAGATGTTTTTCTCGGG
13._RUQ_1541
__AGCT____GT___CG_
14._RUQ_1541
_AAAG_GGAAAG_ACAGAAAGCGGG

Input profile: B_12_/1_[POU] RUQ_1541

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._B_12_/1_[POU]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 1 > FP
 Dapeng Zhang, 2016

2._B_12_/1_[POU]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 5
 Dapeng Zhang, 2016

3._B_12_/1_[POU]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 4
 Dapeng Zhang, 2016

4._B_12_/1_[POU]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

5._B_12_/1_[POU]

identical
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F461 T10
 Dapeng Zhang, 2016

6._B_12_/1_[POU]

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 3
 Dapeng Zhang, 2016

7._B_12_/1_[POU] RUQ_1541

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

8._B_12_/1_[POU] GC-05-093-2-44

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

9._B_12_/1_[POU] GC-05-093-2-44

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

10._B_12_/1_[POU] GC-05-093-2-44

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

11._B_12_/1_[POU] GC-05-093-2-44

97.6 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

12._B_12_/1_[POU] GC-05-093-2-44

97.6 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

13._B_12_/1_[POU] RUQ_1541

96.9 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

14._B_12_/1_[POU] RUQ_1541

47.2 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484