SNP Profiles of ICS 43   View Data

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 Key

 1234567891011121314
_Input profile
CTACACGTCTGGACCGGGCTAGAGAACC
1._RUQ_144
____ACGTCT__ACCGGGCT____AA__
2._ICS_43
____ACGTCT__AC__GGCT____AA__
3._RUQ_144
____AC__________GG__AG______
4._ICS43
____AC__CTGGACCGGG____AGAACC
5._GC-01-051-3-06
TTCCAATTTTGGAACCGGCCGGGGAACC
6._GC-01-051-3-06
TTCCAATTTTGGAACCGGCCGGGGAACC
7._GC-01-051-3-06
TTCCAATTTTGGAACCGGCCGGGGAACC
8._GC-01-051-3-06
TTCCAATTTTGGAACCGGCCGGGGAACC
9._GC-01-051-3-06
TTCCAATTTTGGAACCGGCCGGGGAACC
10._GC-01-051-3-06
TTCCAATTTTGGAACCGGCCGGGGAACC
11._GC-01-051-3-06
TTCCAATTTTGGAACCGGCCGGGGAACC
12._GC-01-051-3-06
TTCCAATTTTGGAACCGGCCGGGGAACC
13._GC-01-051-3-06
TTCCAATTTTGGAACCGGCCGGGGAACC
14._GC-01-051-3-06
TTCCAATTTTGGAACC__CCGGGGAACC
15._RUQ_144
AGACACACAGGGACCGGGAGAGAGAAGG
16._ICS_43_Fld#_164_Plt#_1
AGACACACAGGGACCGGGAGAGAGAAGG
17._ICS_43
____AATTTT__AACCGGCC____AA__
18._ICS_43
____AATTTT__AACCGGCC____AA__
19._ICS_43
____AATTTT__AACCGGCC____AA__
20._ICS_43
____AATTTT__AACCGGCC____AA__
21._ICS_43
____AATTTT__AACCGGCC____AA__
22._ICS_43
____AATTTT__AACCGGCC____AA__
23._ICS_43
____AATTTT__AACCGGCC____AA__
24._ICS_43
____AATTTT__AACCGGCC____AA__
25._ICS_43
____AATTTT__AACCGGCC____AA__
26._ICS_43
____AATTTT__AACC__CC____AA__
 1516171819202122232425262728
_Input profile
AGCCTTTTCCAACTTTCCGTAGGTCCGG
1._RUQ_144
AGCCTTTTCCAA__TT__GT______GG
2._ICS_43
AGCCTTTTCCAA__TT__GT______GG
3._RUQ_144
__CC____CCAACT__CCGTAG__CCGG
4._ICS43
________CCAACT____________CC
5._GC-01-051-3-06
GGAACCGGCCCCCCCCCCGGAATTAAGG
6._GC-01-051-3-06
GGAACCGGCCCCCCCCCCGGAATTAAGG
7._GC-01-051-3-06
GGAACCGGCCCCCCCCCCGGAATTAAGG
8._GC-01-051-3-06
GGAACCGGCCCCCCCCCCGGAATTAAGG
9._GC-01-051-3-06
GGAACCGGCCCCCCCCCCGGAATTAAGG
10._GC-01-051-3-06
GGAACCGGCCCCCCCCCCGGAATTAAGG
11._GC-01-051-3-06
GGAACCGGCCCCCCCCCCGGAATTAAGG
12._GC-01-051-3-06
GGAACCGGCCCCCCCCCCGGAATTAAGG
13._GC-01-051-3-06
GGAACCGGCCCCCCCCCCGGAATTAAGG
14._GC-01-051-3-06
__AACCGGCCCCCCCCCCGGAATTAAGG
15._RUQ_144
__CC__AACCAAAGAA__ACAGACCCCC
16._ICS_43_Fld#_164_Plt#_1
__CC__AACCAAAGAA__ACAGACCCCC
17._ICS_43
GGAACCGGCCCC__CC__GG______GG
18._ICS_43
GGAACCGGCCCC__CC__GG______GG
19._ICS_43
GGAACCGGCCCC__CC__GG______GG
20._ICS_43
GGAACCGGCCCC__CC__GG______GG
21._ICS_43
GGAACCGGCCCC__CC__GG______GG
22._ICS_43
GGAACCGGCCCC__CC__GG______GG
23._ICS_43
GGAACCGGCCCC__CC__GG______GG
24._ICS_43
GGAACCGGCCCC__CC__GG______GG
25._ICS_43
GGAACCGGCCCC__CC__GG______GG
26._ICS_43
__AACCGGCCCC__CC__GG______GG
 29303132333435363738394041 
_Input profile
CGCCAACTGTAGATGTCTCTCTGGAGX_X
1._RUQ_144
__CCAACT______GT____CTGGAGX_X
2._ICS_43
__CCAACT______GT____CTGGAGX_X
3._RUQ_144
____AA________GT______GG__X_X
4._ICS43
CGCC__CT__AGAT____CT__CC__X_X
5._GC-01-051-3-06
CCCCGGCCGGGGTTTTTTCCCCCCGGX_X
6._GC-01-051-3-06
CCCCGGCCGGGGTTTTTTCCCCCCGGX_X
7._GC-01-051-3-06
CCCCGGCCGGGGTTTTTTCCCCCCGGX_X
8._GC-01-051-3-06
CCCCGGCCGGGGTTTTTTCCCCCCGGX_X
9._GC-01-051-3-06
CCCCGGCCGGGGTTTTTTCCCCCCGGX_X
10._GC-01-051-3-06
CCCCGGCCGGGGTTTTTTCCCCCCGGX_X
11._GC-01-051-3-06
CCCCGGCCGGGGTTTTTTCCCCCCGGX_X
12._GC-01-051-3-06
CCCCGGCCGGGGTTTTTTCCCCCCGGX_X
13._GC-01-051-3-06
CCCCGGCCGGGGTTTTTTCCCCCCGGX_X
14._GC-01-051-3-06
CCCCGGCCGGGGTTTTTTCCCCCCGGX_X
15._RUQ_144
__GGAAAGACAG__AAAGAGAGCCAGX_X
16._ICS_43_Fld#_164_Plt#_1
__GGAAAGACAG__AAAGAGAGCCAGX_X
17._ICS_43
__CCGGCC______TT____CCCCGGX_X
18._ICS_43
__CCGGCC______TT____CCCCGGX_X
19._ICS_43
__CCGGCC______TT____CCCCGGX_X
20._ICS_43
__CCGGCC______TT____CCCCGGX_X
21._ICS_43
__CCGGCC______TT____CCCCGGX_X
22._ICS_43
__CCGGCC______TT____CCCCGGX_X
23._ICS_43
__CCGGCC______TT____CCCCGGX_X
24._ICS_43
__CCGGCC______TT____CCCCGGX_X
25._ICS_43
__CCGGCC______TT____CCCCGGX_X
26._ICS_43
__CCGGCC______TT____CCCCGGX_X

Input profile: ICS_43 RUQ_144

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._ICS_43 RUQ_144

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._ICS_43

identical
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block3
 Dapeng Zhang, 2016

3._ICS_43 RUQ_144

identical
15 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

4._ICS_43 ICS43

90 %
20 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

5._ICS_43 GC-01-051-3-06

50 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

6._ICS_43 GC-01-051-3-06

50 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

7._ICS_43 GC-01-051-3-06

50 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

8._ICS_43 GC-01-051-3-06

50 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

9._ICS_43 GC-01-051-3-06

50 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

10._ICS_43 GC-01-051-3-06

50 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

11._ICS_43 GC-01-051-3-06

50 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

12._ICS_43 GC-01-051-3-06

50 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

13._ICS_43 GC-01-051-3-06

50 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

14._ICS_43 GC-01-051-3-06

48.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

15._ICS_43 RUQ_144

47.2 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

16._ICS_43 ICS_43_Fld#_164_Plt#_1

47.2 %
36 shared markers

USDA-TARS, United States of America
Location: Field: 164, Tree: 1
 Mars, 2018

17._ICS_43

45.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 2
 Dapeng Zhang, 2016

18._ICS_43

45.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

19._ICS_43

45.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 2
 Dapeng Zhang, 2016

20._ICS_43

45.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 4
 Dapeng Zhang, 2016

21._ICS_43

45.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 12
 Dapeng Zhang, 2016

22._ICS_43

45.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 14
 Dapeng Zhang, 2016

23._ICS_43

45.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 15
 Dapeng Zhang, 2016

24._ICS_43

45.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 8 > FP
 Dapeng Zhang, 2016

25._ICS_43

45.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 9 > FP
 Dapeng Zhang, 2016

26._ICS_43

43.2 %
22 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 3
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP1060 33TcSNP1063 34TcSNP1111 35TcSNP1126
36TcSNP1253 37TcSNP1309 38TcSNP1439 39TcSNP1442 40TcSNP1458
41TcSNP1484