SNP Profiles of ICS 1 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AA	AA	GT	CC	AG	AA	CG	AG	CT	AG	AA	AT	CG
1._ICS_1	__	__	AA	GT	CC	__	AA	CG	AG	CT	__	__	AT	__
2._ICS_1	__	__	AA	GT	CC	__	AA	CG	AG	CT	__	__	AT	__
3._ICS_1	__	__	AA	GT	CC	__	AA	CG	AG	CT	__	__	AT	__
4._ICS_1	__	__	AA	GT	CC	__	AA	CG	AG	CT	__	__	AT	__
5._ICS_1	__	__	AA	GT	CC	__	AA	CG	AG	CT	__	__	AT	__
6._ICS_1	__	__	AA	GT	CC	__	AA	CG	AG	CT	__	__	AT	__
7._ICS_1	__	__	AA	GT	CC	__	AA	CG	AG	CT	__	__	AT	__
8._NA	CT	AA	AA	GT	CC	AG	AA	CG	AG	CT	AG	AA	AT	CG
9._NA	CT	AA	AA	GT	CC	AG	AA	CG	AG	CT	AG	AA	AT	CG
10._NA	CT	AA	AA	GT	CC	AG	AA	CG	AG	CT	AG	AA	AT	CG
11._NA	CT	AA	AA	GT	CC	AG	AA	CG	AG	CT	AG	AA	AT	CG
12._NA	CT	AA	AA	GT	CC	AG	AA	CG	AG	CT	AG	AA	AT	CG
13._NA	CT	AA	AA	GT	CC	AG	AA	CG	AG	CT	AG	AA	AT	CG
14._RUQ_847	__	__	AA	GT	CC	__	AA	CG	AG	CT	__	__	AT	__
15._RUQ_847B	__	__	AA	__	__	__	__	__	AG	__	AG	__	__	__
16._RUQ_847	__	__	AA	__	__	__	__	__	AG	__	AG	__	__	__
17._RUQ_847	__	__	AA	__	CC	AG	AA	CG	AG	__	__	AA	AT	CG
18._RUQ_847	__	__	AA	GT	CC	__	AA	CG	AG	CT	__	__	AT	__
19._ICS_1	__	__	AC	GT	CC	__	AA	CC	AA	CC	__	__	AA	__
20._RUQ_847	AG	AA	AA	AC	GG	AG	AA	CG	AG	AG	AG	AA	AT	CG
21._MITC-000297	AG	AA	AA	AC	GG	AG	AA	CG	AG	AG	AG	AA	AT	CG
22._ICS_1_Fld#_73_Plt#_2	AG	AA	AA	AC	GG	AG	AA	CG	AG	AG	AG	AA	AT	CG
23._ICS1	__	__	CC	__	CT	AG	AC	CG	AG	__	__	AG	TT	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	CC	TT	TT	CC	AA	CT	TT	CT	GT	GG	GT	AC	CG
1._ICS_1	AG	CC	TT	TT	CC	AC	__	TT	__	GT	__	__	__	CG
2._ICS_1	AG	CC	TT	TT	CC	AC	__	TT	__	GT	__	__	__	CG
3._ICS_1	AG	CC	TT	TT	CC	AC	__	TT	__	GT	__	__	__	CG
4._ICS_1	AG	CC	TT	TT	CC	AC	__	TT	__	GT	__	__	__	CG
5._ICS_1	AG	CC	TT	TT	CC	AC	__	TT	__	GT	__	__	__	CG
6._ICS_1	AG	CC	TT	TT	__	AC	__	TT	__	GT	__	__	__	CG
7._ICS_1	__	CC	TT	TT	CC	AC	__	TT	__	GT	__	__	__	__
8._NA	AG	CC	TT	TT	CC	AC	CT	TT	CC	GT	GG	GT	AC	CG
9._NA	AG	CC	TT	TT	CC	AC	CT	TT	CC	GT	GG	GT	AC	CG
10._NA	AG	CC	TT	TT	CC	AC	CT	TT	CC	GT	GG	GT	AC	CG
11._NA	AG	CC	TT	TT	CC	AC	CT	TT	CC	GT	GG	GT	AC	CG
12._NA	AG	CC	TT	TT	CC	AC	CT	TT	CC	GT	GG	GT	AC	CG
13._NA	AG	CC	TT	TT	__	AC	CT	TT	CC	GT	GG	GT	AC	CG
14._RUQ_847	AG	CC	TT	TT	CC	AC	__	TT	__	GT	__	__	__	CG
15._RUQ_847B	__	AC	__	__	CC	AC	CT	__	CT	GT	GG	__	AC	CG
16._RUQ_847	__	AC	__	__	CC	AC	CT	__	CT	GT	GG	__	AC	CG
17._RUQ_847	__	__	__	__	CC	AC	CT	__	__	__	__	__	__	CG
18._RUQ_847	AG	CC	CT	TT	CC	AC	__	CT	__	GT	__	__	__	CG
19._ICS_1	AG	AA	CT	GG	CG	CC	__	TT	__	GG	__	__	__	GG
20._RUQ_847	__	CC	__	AA	CC	AC	AG	AA	__	AC	GG	AC	AC	CG
21._MITC-000297	__	CC	__	AA	CC	AC	AG	AA	__	AC	GG	AC	AC	CG
22._ICS_1_Fld#_73_Plt#_2	__	CC	__	AA	CC	AC	AG	AA	__	AC	GG	AC	AC	CG
23._ICS1	__	__	__	__	CC	CC	CC	__	__	__	__	__	__	CG

	29	30	31	32	33	34	35	36	37	38	39	40	41
_Input profile	CG	CC	AG	TT	GT	AA	AA	TT	CT	TT	CT	GG	AA	X_X
1._ICS_1	__	CC	AG	TT	__	__	__	TT	__	__	CT	GG	AA	X_X
2._ICS_1	__	CC	AG	TT	__	__	__	TT	__	__	CT	GG	AA	X_X
3._ICS_1	__	CC	AG	TT	__	__	__	TT	__	__	CT	GG	AA	X_X
4._ICS_1	__	CC	AG	TT	__	__	__	TT	__	__	CT	GG	AA	X_X
5._ICS_1	__	CC	AG	TT	__	__	__	TT	__	__	CT	GG	AA	X_X
6._ICS_1	__	CC	AG	TT	__	__	__	TT	__	__	CT	GG	AA	X_X
7._ICS_1	__	CC	AG	TT	__	__	__	TT	__	__	CT	GG	AA	X_X
8._NA	CG	CC	AG	TT	GT	AA	AA	TT	TT	TT	CT	GG	AA	X_X
9._NA	CG	CC	AG	TT	GT	AA	AA	TT	TT	TT	CT	GG	AA	X_X
10._NA	CG	CC	AG	TT	GT	AA	AA	TT	TT	TT	CT	GG	AA	X_X
11._NA	CG	CC	AG	TT	GT	AA	AA	TT	TT	TT	CT	GG	AA	X_X
12._NA	CG	CC	AG	TT	GT	AA	AA	TT	TT	TT	CT	GG	AA	X_X
13._NA	CG	CC	AG	TT	GT	AA	AA	TT	TT	TT	CT	GG	AA	X_X
14._RUQ_847	__	CC	AG	TT	__	__	__	TT	__	__	CT	GG	AG	X_X
15._RUQ_847B	__	__	AG	__	__	__	__	TT	__	__	__	GG	__	X_X
16._RUQ_847	__	__	AG	__	__	__	__	TT	__	__	__	GG	__	X_X
17._RUQ_847	CG	CC	__	TT	__	AA	AA	__	__	TT	__	CC	__	X_X
18._RUQ_847	__	CC	AG	TT	__	__	__	TT	__	__	CT	GG	AG	X_X
19._ICS_1	__	CC	AG	CC	__	__	__	TT	__	__	CT	GG	GG	X_X
20._RUQ_847	__	GG	AG	AA	AC	AA	__	AA	AG	AA	AG	CC	AA	X_X
21._MITC-000297	__	GG	AG	AA	AC	AA	__	AA	AG	AA	AG	CC	AA	X_X
22._ICS_1_Fld#_73_Plt#_2	__	GG	AG	AA	AC	AA	__	AA	AG	AA	AG	CC	AA	X_X
23._ICS1	GG	CT	__	CC	__	GG	TT	__	__	CT	__	CG	__	X_X

Input profile: ICS_1 RUQ_847

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._ICS_1

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 8

Dapeng Zhang, 2016

2._ICS_1

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 6

Dapeng Zhang, 2016

3._ICS_1

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 5

Dapeng Zhang, 2016

4._ICS_1

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 3

Dapeng Zhang, 2016

5._ICS_1

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 1

Dapeng Zhang, 2016

6._ICS_1

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 7

Dapeng Zhang, 2016

7._ICS_1

97.7 %
22 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block4

Dapeng Zhang, 2016

8._ICS_1 NA

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

9._ICS_1 NA

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

10._ICS_1 NA

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

11._ICS_1 NA

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

12._ICS_1 NA

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

13._ICS_1 NA

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

14._ICS_1 RUQ_847

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

15._ICS_1 RUQ_847B

93.3 %
15 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

16._ICS_1 RUQ_847

93.3 %
15 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.578 Cri
0.416

17._ICS_1 RUQ_847

92.5 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: GBR207

Jocelyn De Wever et al., 2019

18._ICS_1 RUQ_847

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

19._ICS_1

60.4 %
24 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

20._ICS_1 RUQ_847

51.4 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

21._ICS_1 MITC-000297

51.4 %
36 shared markers

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USDA-SHRS, United States of America

22._ICS_1 ICS_1_Fld#_73_Plt#_2

51.4 %
36 shared markers

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USDA-TARS, United States of America

Location: Field: 73, Tree: 2

23._ICS_1 ICS1

50 %
20 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam

Location: CEFORTT

Jocelyn De Wever et al., 2019

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP1060	33	TcSNP1063	34	TcSNP1111	35	TcSNP1126
36	TcSNP1253	37	TcSNP1309	38	TcSNP1439	39	TcSNP1442	40	TcSNP1458
41	TcSNP1484