SNP Profiles of ICS 1   View Data

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 Key

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_Input profile
CTAAAAGTCCAGAACGAGCTAGAAATCG
1._ICS_1
____AAGTCC__AACGAGCT____AT__
2._ICS_1
____AAGTCC__AACGAGCT____AT__
3._ICS_1
____AAGTCC__AACGAGCT____AT__
4._ICS_1
____AAGTCC__AACGAGCT____AT__
5._ICS_1
____AAGTCC__AACGAGCT____AT__
6._ICS_1
____AAGTCC__AACGAGCT____AT__
7._ICS_1
____AAGTCC__AACGAGCT____AT__
8._NA
CTAAAAGTCCAGAACGAGCTAGAAATCG
9._NA
CTAAAAGTCCAGAACGAGCTAGAAATCG
10._NA
CTAAAAGTCCAGAACGAGCTAGAAATCG
11._NA
CTAAAAGTCCAGAACGAGCTAGAAATCG
12._NA
CTAAAAGTCCAGAACGAGCTAGAAATCG
13._NA
CTAAAAGTCCAGAACGAGCTAGAAATCG
14._RUQ_847
____AAGTCC__AACGAGCT____AT__
15._RUQ_847B
____AA__________AG__AG______
16._RUQ_847
____AA__________AG__AG______
17._RUQ_847
____AA__CCAGAACGAG____AAATCG
18._RUQ_847
____AAGTCC__AACGAGCT____AT__
19._ICS_1
____ACGTCC__AACCAACC____AA__
20._RUQ_847
AGAAAAACGGAGAACGAGAGAGAAATCG
21._MITC-000297
AGAAAAACGGAGAACGAGAGAGAAATCG
22._ICS_1_Fld#_73_Plt#_2
AGAAAAACGGAGAACGAGAGAGAAATCG
23._ICS1
____CC__CTAGACCGAG____AGTTGG
 1516171819202122232425262728
_Input profile
AGCCTTTTCCAACTTTCTGTGGGTACCG
1._ICS_1
AGCCTTTTCCAC__TT__GT______CG
2._ICS_1
AGCCTTTTCCAC__TT__GT______CG
3._ICS_1
AGCCTTTTCCAC__TT__GT______CG
4._ICS_1
AGCCTTTTCCAC__TT__GT______CG
5._ICS_1
AGCCTTTTCCAC__TT__GT______CG
6._ICS_1
AGCCTTTT__AC__TT__GT______CG
7._ICS_1
__CCTTTTCCAC__TT__GT________
8._NA
AGCCTTTTCCACCTTTCCGTGGGTACCG
9._NA
AGCCTTTTCCACCTTTCCGTGGGTACCG
10._NA
AGCCTTTTCCACCTTTCCGTGGGTACCG
11._NA
AGCCTTTTCCACCTTTCCGTGGGTACCG
12._NA
AGCCTTTTCCACCTTTCCGTGGGTACCG
13._NA
AGCCTTTT__ACCTTTCCGTGGGTACCG
14._RUQ_847
AGCCTTTTCCAC__TT__GT______CG
15._RUQ_847B
__AC____CCACCT__CTGTGG__ACCG
16._RUQ_847
__AC____CCACCT__CTGTGG__ACCG
17._RUQ_847
________CCACCT____________CG
18._RUQ_847
AGCCCTTTCCAC__CT__GT______CG
19._ICS_1
AGAACTGGCGCC__TT__GG______GG
20._RUQ_847
__CC__AACCACAGAA__ACGGACACCG
21._MITC-000297
__CC__AACCACAGAA__ACGGACACCG
22._ICS_1_Fld#_73_Plt#_2
__CC__AACCACAGAA__ACGGACACCG
23._ICS1
________CCCCCC____________CG
 29303132333435363738394041 
_Input profile
CGCCAGTTGTAAAATTCTTTCTGGAAX_X
1._ICS_1
__CCAGTT______TT____CTGGAAX_X
2._ICS_1
__CCAGTT______TT____CTGGAAX_X
3._ICS_1
__CCAGTT______TT____CTGGAAX_X
4._ICS_1
__CCAGTT______TT____CTGGAAX_X
5._ICS_1
__CCAGTT______TT____CTGGAAX_X
6._ICS_1
__CCAGTT______TT____CTGGAAX_X
7._ICS_1
__CCAGTT______TT____CTGGAAX_X
8._NA
CGCCAGTTGTAAAATTTTTTCTGGAAX_X
9._NA
CGCCAGTTGTAAAATTTTTTCTGGAAX_X
10._NA
CGCCAGTTGTAAAATTTTTTCTGGAAX_X
11._NA
CGCCAGTTGTAAAATTTTTTCTGGAAX_X
12._NA
CGCCAGTTGTAAAATTTTTTCTGGAAX_X
13._NA
CGCCAGTTGTAAAATTTTTTCTGGAAX_X
14._RUQ_847
__CCAGTT______TT____CTGGAGX_X
15._RUQ_847B
____AG________TT______GG__X_X
16._RUQ_847
____AG________TT______GG__X_X
17._RUQ_847
CGCC__TT__AAAA____TT__CC__X_X
18._RUQ_847
__CCAGTT______TT____CTGGAGX_X
19._ICS_1
__CCAGCC______TT____CTGGGGX_X
20._RUQ_847
__GGAGAAACAA__AAAGAAAGCCAAX_X
21._MITC-000297
__GGAGAAACAA__AAAGAAAGCCAAX_X
22._ICS_1_Fld#_73_Plt#_2
__GGAGAAACAA__AAAGAAAGCCAAX_X
23._ICS1
GGCT__CC__GGTT____CT__CG__X_X

Input profile: ICS_1 RUQ_847

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._ICS_1

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 8
 Dapeng Zhang, 2016

2._ICS_1

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 6
 Dapeng Zhang, 2016

3._ICS_1

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 5
 Dapeng Zhang, 2016

4._ICS_1

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 3
 Dapeng Zhang, 2016

5._ICS_1

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

6._ICS_1

97.8 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 7
 Dapeng Zhang, 2016

7._ICS_1

97.7 %
22 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block4
 Dapeng Zhang, 2016

8._ICS_1 NA

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

9._ICS_1 NA

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

10._ICS_1 NA

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

11._ICS_1 NA

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

12._ICS_1 NA

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

13._ICS_1 NA

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

14._ICS_1 RUQ_847

95.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

15._ICS_1 RUQ_847B

93.3 %
15 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

16._ICS_1 RUQ_847

93.3 %
15 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

17._ICS_1 RUQ_847

92.5 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

18._ICS_1 RUQ_847

91.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

19._ICS_1

60.4 %
24 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

20._ICS_1 RUQ_847

51.4 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

21._ICS_1 MITC-000297

51.4 %
36 shared markers

USDA-SHRS, United States of America
 Mars, 2018

22._ICS_1 ICS_1_Fld#_73_Plt#_2

51.4 %
36 shared markers

USDA-TARS, United States of America
Location: Field: 73, Tree: 2
 Mars, 2018

23._ICS_1 ICS1

50 %
20 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP1060 33TcSNP1063 34TcSNP1111 35TcSNP1126
36TcSNP1253 37TcSNP1309 38TcSNP1439 39TcSNP1442 40TcSNP1458
41TcSNP1484