SNP Profiles of AMAZ 3 /2   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCAAGTCCGGAAGGAAGGGGATCCCC
1._AMAZ_3_/2
____AAGTCC__AAGGAA____ATCCCC
2._AMAZ_3_/2
____AAGTCC__AAGGAA____ATCCCC
3._AMAZ_3_/2
____AAGTCC__AAGGAA____ATCCCC
4._AMAZ_3_/2
____AAGTCC__AAGGAA____ATCCCC
5._AMAZ_3_/2
____AAGTCC__AAGGAA____ATCCCC
6._AMAZ_3_/2
____AAGTCC__AAGGAA____ATCCCC
7._AMAZ_3_/2
____AAGTCC__AAGGAA____ATCCCC
8._AMAZ_3_/2
____AAGTCC__AAGGAA____ATCCCC
9._AMAZ_3_/2
____AAGTCC__AAGGAA____ATCCCC
10._AMAZ_3_/2
____AAGT____AAGGAA____ATCCCC
11._AMAZ_3_/2
____AAGTCC__AAGGAA____ATCCCC
12._RUQ_91
____AA__________AAGG____CC__
13._RUQ_91b
____AA__________AAGG____CC__
14._GC-03-022-2-11
TTCCAAGTCCGGAAGGAAGGGGATCCCC
15._GC-03-022-2-11
TTCCAAGTCCGGAAGGAAGGGGATCCCC
16._GC-03-022-2-11
TTCCAAGTCCGGAAGGAAGGGGATCCCC
17._GC-03-022-2-11
TTCCAAGTCCGGAAGGAAGGGGATCCCC
18._GC-03-022-2-11
TTCCAAGTCCGGAAGGAAGGGGATCCCC
19._GC-03-022-2-11
TTCCAAGTCCGGAAGGAAGGGGATCCCC
20._GC-03-022-2-11
TTCCAAGTCCGGAAGGAAGGGGATCCCC
21._GC-03-022-2-11
TTCCAAGTCCGGAAGGAAGGGGATCCCC
22._GC-03-022-2-11
TTCCAAGTCCGGAAGGAAGGGGATCCCC
23._GC-03-022-2-11
TTCCAAGT__GGAAGGAAGGGGATCCCC
24._RUQ_91
____AAGTCC__AAGGAA____ATCCCC
25._GC-03-022-2-11
TTCCACGGCTGGACCCGGGGGGATCCCT
26._GC-03-022-2-11
TTCCACGGCTGGACCCGGGGGGATCCCT
27._GC-03-022-2-11
TTCCACGGCTGGACCCGGGGGGATCCCT
28._GC-03-022-2-11
TTCCACGGCTGGACCCGGGGGGATCCCT
29._AMAZ_3_/2
____ACGGCT__ACCCGG____ATCCCT
30._AMAZ_3_/2
____ACGGCT__ACCCGG____ATCCCT
31._AMAZ_3_/2
____ACGGCT__ACCCGG____ATCCCT
32._AMAZ_3_/2
____ACGGCT__ACCCGG____ATCCCT
33._RUQ_91
AACCAAACGGGGAACCAAGGGGATCC__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCAATTCCTTGTTTCGCCAACCGGAATT
1._AMAZ_3_/2
CCAA__CC__GT____CCAACC______
2._AMAZ_3_/2
__AA__CC__GT____CCAACC______
3._AMAZ_3_/2
__AA__CC__GT____CCAACC______
4._AMAZ_3_/2
__AA__CC__GT____CCAACC______
5._AMAZ_3_/2
__AA__CC__GT____CCAACC______
6._AMAZ_3_/2
__AA__CC__GT____CCAACC______
7._AMAZ_3_/2
__AA__CC__GT____CCAACC______
8._AMAZ_3_/2
__AA__CC__GT____CCAACC______
9._AMAZ_3_/2
__AA__CC__GT____CCAACC______
10._AMAZ_3_/2
__AA__CC__GT____CCAACC______
11._AMAZ_3_/2
__AA__CC__GT____CCAACC______
12._RUQ_91
__AATT__TTGT______AA________
13._RUQ_91b
__AATT__TTGT______AA________
14._GC-03-022-2-11
__AATTCCTTGTTTCGCCAACCGGGGTT
15._GC-03-022-2-11
__AATTCCTTGTTTCGCCAACCGGGGTT
16._GC-03-022-2-11
__AATTCCTTGTTTCGCCAACCGGGGTT
17._GC-03-022-2-11
__AATTCCTTGTTTCGCCAACCGGGGTT
18._GC-03-022-2-11
__AATTCCTTGTTTCGCCAACCGGGGTT
19._GC-03-022-2-11
__AATTCCTTGTTTCGCCAACCGGGGTT
20._GC-03-022-2-11
__AATTCCTTGTTTCGCCAACCGGGGTT
21._GC-03-022-2-11
__AATTCCTTGTTTCGCCAACCGGGGTT
22._GC-03-022-2-11
__AATTCCTTGTTTCGCCAACCGGGGTT
23._GC-03-022-2-11
__AATTCCTTGTTTCGCCAACCGGGGTT
24._RUQ_91
CCAA__CC__GT____CCAACT______
25._GC-03-022-2-11
GGACCCCTCTGGTTCGCTAGCCGGAGTT
26._GC-03-022-2-11
GGACCCCTCTGGTTCGCTAGCCGGAGTT
27._GC-03-022-2-11
GGACCCCTCTGGTTCGCTAGCCGGAGTT
28._GC-03-022-2-11
GGACCCCTCTGGTTCGCTAGCCGGAGTT
29._AMAZ_3_/2
GGAC__CT__GG____CTAGCC______
30._AMAZ_3_/2
GGAC__CT__GG____CTAGCC______
31._AMAZ_3_/2
GGAC__CT__GG____CTAGCC______
32._AMAZ_3_/2
GGAC__CT__GG____CTAGCC______
33._RUQ_91
CCAAAAGG__ACAA__GGAAGGCCGG__
 29 30 31 32           
_Input profile
TTTTCCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._AMAZ_3_/2
TT__CCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._AMAZ_3_/2
TT__CCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._AMAZ_3_/2
TT__CCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._AMAZ_3_/2
TT__CCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._AMAZ_3_/2
TT__CCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._AMAZ_3_/2
TT__CCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._AMAZ_3_/2
TT__CCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._AMAZ_3_/2
TT__CCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._AMAZ_3_/2
TT__CCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._AMAZ_3_/2
TT__CCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._AMAZ_3_/2
TT__CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._RUQ_91
TT__CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._RUQ_91b
TT__CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._GC-03-022-2-11
TTTTCCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._GC-03-022-2-11
TTTTCCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GC-03-022-2-11
TTTTCCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GC-03-022-2-11
TTTTCCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GC-03-022-2-11
TTTTCCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._GC-03-022-2-11
TTTTCCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GC-03-022-2-11
TTTTCCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._GC-03-022-2-11
TTTTCCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GC-03-022-2-11
TTTTCC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._GC-03-022-2-11
TTTTCCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._RUQ_91
TT__CCAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._GC-03-022-2-11
GTTTCCAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._GC-03-022-2-11
GTTTCCAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._GC-03-022-2-11
GTTTCCAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._GC-03-022-2-11
GTTTCCAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._AMAZ_3_/2
GT__CCAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
30._AMAZ_3_/2
GT__CCAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
31._AMAZ_3_/2
GT__CCAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
32._AMAZ_3_/2
GT__CCAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
33._RUQ_91
AAAAGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: AMAZ_3_/2 RUQ_91

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._AMAZ_3_/2

identical
19 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P97 225
 Dapeng Zhang, 2016

2._AMAZ_3_/2

identical
18 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 8
 Dapeng Zhang, 2016

3._AMAZ_3_/2

identical
18 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 9
 Dapeng Zhang, 2016

4._AMAZ_3_/2

identical
18 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 12
 Dapeng Zhang, 2016

5._AMAZ_3_/2

identical
18 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 13
 Dapeng Zhang, 2016

6._AMAZ_3_/2

identical
18 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 15
 Dapeng Zhang, 2016

7._AMAZ_3_/2

identical
18 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 1 > FP
 Dapeng Zhang, 2016

8._AMAZ_3_/2

identical
18 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 14 > F
 Dapeng Zhang, 2016

9._AMAZ_3_/2

identical
18 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 5 > FP
 Dapeng Zhang, 2016

10._AMAZ_3_/2

identical
17 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 7
 Dapeng Zhang, 2016

11._AMAZ_3_/2

identical
17 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 16
 Dapeng Zhang, 2016

12._AMAZ_3_/2 RUQ_91

identical
11 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
IMC
0.570 Nac
0.115 Par
0.146 Pur
0.097

13._AMAZ_3_/2 RUQ_91b

identical
11 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

14._AMAZ_3_/2 GC-03-022-2-11

96.8 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

15._AMAZ_3_/2 GC-03-022-2-11

96.8 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP2
 Mars, 2018

16._AMAZ_3_/2 GC-03-022-2-11

96.8 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

17._AMAZ_3_/2 GC-03-022-2-11

96.8 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

18._AMAZ_3_/2 GC-03-022-2-11

96.8 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

19._AMAZ_3_/2 GC-03-022-2-11

96.8 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

20._AMAZ_3_/2 GC-03-022-2-11

96.8 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

21._AMAZ_3_/2 GC-03-022-2-11

96.8 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

22._AMAZ_3_/2 GC-03-022-2-11

96.7 %
30 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

23._AMAZ_3_/2 GC-03-022-2-11

96.7 %
30 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

24._AMAZ_3_/2 RUQ_91

94.7 %
19 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

25._AMAZ_3_/2 GC-03-022-2-11

65.6 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

26._AMAZ_3_/2 GC-03-022-2-11

65.6 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

27._AMAZ_3_/2 GC-03-022-2-11

65.6 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

28._AMAZ_3_/2 GC-03-022-2-11

65.6 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

29._AMAZ_3_/2

52.6 %
19 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 10
 Dapeng Zhang, 2016

30._AMAZ_3_/2

52.6 %
19 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 2
 Dapeng Zhang, 2016

31._AMAZ_3_/2

52.6 %
19 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 4
 Dapeng Zhang, 2016

32._AMAZ_3_/2

52.6 %
19 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 3 > FP
 Dapeng Zhang, 2016

33._AMAZ_3_/2 RUQ_91

46.4 %
28 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP329
11TcSNP364 12TcSNP372 13TcSNP529 14TcSNP534 15TcSNP577
16TcSNP591 17TcSNP602 18TcSNP619 19TcSNP702 20TcSNP723
21TcSNP799 22TcSNP878 23TcSNP891 24TcSNP998 25TcSNP1060
26TcSNP1063 27TcSNP1111 28TcSNP1126 29TcSNP1253 30TcSNP1309
31TcSNP1458 32TcSNP1484