SNP Profiles of GU 171 /C   View Data

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_Input profile
TTCCAATTTTGGAACCGGCCGGGGAACC
1._GC-01-094-5-11
TTCCAATTTTGGAACCGGCCGGGGAACC
2._GC-01-094-5-11
TTCCAATTTTGGAACCGGCCGGGGAACC
3._GC-01-094-5-11
TTCCAATTTTGGAACCGGCCGGGGAACC
4._GC-01-094-5-11
TTCCAATTTTGGAACCGGCCGGGGAACC
5._GC-01-094-5-11
TTCCAATTTTGGAACCGGCCGGGGAACC
6._GC-01-094-5-11
TTCCAATTTTGGAACCGGCCGGGGAACC
7._GC-01-094-5-11
TT__AATTTTGGAACCGGCCGGGGAACC
8._GU_171_/C
____AATTTT__AACCGGCC____AA__
9._GU_171_/C
____AATTTT__AACCGGCC____AA__
10._GU_171_/C
____AATTTT__AACCGGCC____AA__
11._GU_171_/C
____AATTTT__AACCGGCC____AA__
12._GU_171_/C
____AATTTT__AACCGGCC____AA__
13._GU_171_/C
____AATTTT__AACCGGCC____AA__
14._GU_171_/C
____AATTTT__AACCGGCC____AA__
15._RUQ_195
____AA__________GG__GG______
16._RUQ_195
____AATTTT__AACCGGCC____AA__
17._GC-01-94-5-11
AACCAAAAAAGGAAGGGGGGGGGGAAGG
18._GC-01-94-5-11
AACCAAAAAAGGAAGGGGGGGGGGAAGG
19._RUQ_195
AACCAAAAAAGGAAGGGGGGGGGGAAGG
 1516171819202122232425262728
_Input profile
AGAACCGGCCCCCCCCCCGGAATTAAGG
1._GC-01-094-5-11
AGAACCGGCCCCCCCCCCGGAATTAAGG
2._GC-01-094-5-11
AGAACCGGCCCCCCCCCCGGAATTAAGG
3._GC-01-094-5-11
AGAACCGGCCCCCCCCCCGGAATTAAGG
4._GC-01-094-5-11
AGAACCGGCCCCCCCCCCGGAATTAAGG
5._GC-01-094-5-11
AGAACCGGCCCCCCCCCCGGAATTAAGG
6._GC-01-094-5-11
AGAACCGGCCCCCCCCCCGGAATTAAGG
7._GC-01-094-5-11
AGAACCGGCCCCCCCCCCGGAATTAAGG
8._GU_171_/C
AGAACCGGCCCC__CC__GG______GG
9._GU_171_/C
AGAACCGGCCCC__CC__GG______GG
10._GU_171_/C
AGAACCGGCCCC__CC__GG______GG
11._GU_171_/C
AGAACCGGCCCC__CC__GG______GG
12._GU_171_/C
AGAACCGGCCCC__CC__GG______GG
13._GU_171_/C
AGAACCGGCCCC__CC__GG______GG
14._GU_171_/C
AGAACCGGCCCC__CC__GG______GG
15._RUQ_195
________CCCCCC__CCGGAA__AAGG
16._RUQ_195
AGAACCGGCCCC__CC__GG______GG
17._GC-01-94-5-11
__AA__CCCCCCGGGG__CCAAAAAACC
18._GC-01-94-5-11
__AA__CCCCCCGGGG__CCAAAAAACC
19._RUQ_195
__AA__CCCCCCGGGG__CCAAAAAACC
 2930313233343536373839404142
_Input profile
CCCCGGAACCCCGGGGTTTTTTCCCCGG
1._GC-01-094-5-11
CCCCGGAACCCCGGGGTTTTTTCCCCGG
2._GC-01-094-5-11
CCCCGGAACCCCGGGGTTTTTTCCCCGG
3._GC-01-094-5-11
CCCCGGAACCCCGGGGTTTTTTCCCCGG
4._GC-01-094-5-11
CCCCGGAACCCCGGGGTTTTTTCCCCGG
5._GC-01-094-5-11
CCCCGGAACCCCGGGGTTTTTTCCCCGG
6._GC-01-094-5-11
CCCCGGAACCCCGGGGTTTTTTCCCCGG
7._GC-01-094-5-11
CCCCGGAACCCCGGGGTTTTTTCCCCGG
8._GU_171_/C
__CC__AA__CC______TT____CCGG
9._GU_171_/C
__CC__AA__CC______TT____CCGG
10._GU_171_/C
__CC__AA__CC______TT____CCGG
11._GU_171_/C
__CC__AA__CC______TT____CCGG
12._GU_171_/C
__CC__AA__CC______TT____CCGG
13._GU_171_/C
__CC__AA__CC______TT____CCGG
14._GU_171_/C
__CC__AA__CC______TT____CCGG
15._RUQ_195
____GGAACC________TT______GG
16._RUQ_195
__CC__AA__CC______TT____CCGG
17._GC-01-94-5-11
__GGGGAA__GGCCGG__AAAAGGGGCC
18._GC-01-94-5-11
__GGGGAA__GGCCGG__AAAAGGGGCC
19._RUQ_195
__GGGGAA__GGCCGG__AAAAGGGGCC
 43             
_Input profile
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._GC-01-094-5-11
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._GC-01-094-5-11
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._GC-01-094-5-11
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._GC-01-094-5-11
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._GC-01-094-5-11
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._GC-01-094-5-11
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._GC-01-094-5-11
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._GU_171_/C
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._GU_171_/C
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._GU_171_/C
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._GU_171_/C
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._GU_171_/C
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._GU_171_/C
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._GU_171_/C
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._RUQ_195
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._RUQ_195
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GC-01-94-5-11
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GC-01-94-5-11
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._RUQ_195
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: GU_171_/C RUQ_195

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._GU_171_/C GC-01-094-5-11

identical
43 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

2._GU_171_/C GC-01-094-5-11

identical
43 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

3._GU_171_/C GC-01-094-5-11

identical
43 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

4._GU_171_/C GC-01-094-5-11

identical
43 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

5._GU_171_/C GC-01-094-5-11

identical
43 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

6._GU_171_/C GC-01-094-5-11

identical
43 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

7._GU_171_/C GC-01-094-5-11

identical
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

8._GU_171_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 2 > FP
 Dapeng Zhang, 2016

9._GU_171_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 7
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._GU_171_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 9
 Dapeng Zhang, 2016

11._GU_171_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 12
 Dapeng Zhang, 2016

12._GU_171_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 14
 Dapeng Zhang, 2016

13._GU_171_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 1 > FP
 Dapeng Zhang, 2016

14._GU_171_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 10 > F
 Dapeng Zhang, 2016

15._GU_171_/C RUQ_195

identical
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

16._GU_171_/C RUQ_195

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

17._GU_171_/C GC-01-94-5-11

45.9 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 11, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

18._GU_171_/C GC-01-94-5-11

45.9 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 11, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

19._GU_171_/C RUQ_195

45.9 %
37 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP899 32TcSNP998 33TcSNP999 34TcSNP1060 35TcSNP1063
36TcSNP1111 37TcSNP1126 38TcSNP1253 39TcSNP1309 40TcSNP1439
41TcSNP1442 42TcSNP1458 43TcSNP1484