SNP Profiles of GU 221 /H   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCAATTTTGGAACCGGCCGGGGAACC
1._GU_168_/H___
____AATTTT__AACCGGCC____AA__
2._GU_168_/H___
____AA__________GG__GG______
3._GU_168_/H___
TTCCAATTTTGGAACCGGCCGGGGAACC
4._GU_168_/H___
TTCCAATTTTGGAACCGGCCGGGGAACC
5._GU_168_/H___
TTCCAATTTTGGAACCGGCCGGGGAACC
6._GU_168_/H___
TTCCAATTTTGGAACCGGCCGGGGAACC
7._GU_168_/H___
TTCCAATTTTGGAACCGGCCGGGGAACC
8._GU_168_/H___
TTCCAATTTTGGAACCGGCCGGGGAACC
9._GU_168_/H___
TTCCAATTTTGGAACCGGCCGGGGAACC
10._GU_168_/H___
TTCCAATTTTGGAACCGGCCGGGGAACC
11._GU_168_/H___
TTCCAATT__GGAACCGGCCGGGGAACC
12._GU_168_/H___
TTCC__TTTTGGAACCGGCCGGGGAACC
13._GU_168_/H___
____AATTTT__AACCGGCC____AA__
14._GU_168_/H___
____AATTTT__AACCGGCC____AA__
15._GU_168_/H___
____AATTTT__AACCGGCC____AA__
16._GU_168_/H___
____AATTTT__AACCGGCC____AA__
17._GU_168_/H___
____AATTTT__AACCGGCC____AA__
18._GU_168_/H___
____AATTTT__AACCGGCC____AA__
19._GU_168_/H___
____AATTTT__AACCGGCC____AA__
20._GU_168_/H___
______TTTT__AACCGGCC____AA__
21._GU_168_/H___
____AATTTT__AACCGGCC____AA__
22._GU_168_/H___
____AATT____AACCGGCC____AA__
23._GU_168_/H___
TTCCACTTCCGGAACCAACCGGGGAACC
24._GU_168_/H___
____ACTTCC__AACCAACC____AA__
25._GU_168_/H___
AACCAAAAAAGGAAGGGGGGGGGGAAGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AGAACCGGCCCCCCCCCCGGAATTAAGG
1._GU_168_/H___
AGAACCGGCCCC__CC__GG______GG
2._GU_168_/H___
__AA____CCCCCC__CCGGAA__AAGG
3._GU_168_/H___
GGAACCGGCCCCCCCCCCGGAATTAAGG
4._GU_168_/H___
GGAACCGGCCCCCCCCCCGGAATTAAGG
5._GU_168_/H___
GGAACCGGCCCCCCCCCCGGAATTAAGG
6._GU_168_/H___
GGAACCGGCCCCCCCCCCGGAATTAAGG
7._GU_168_/H___
GGAACCGGCCCCCCCCCCGGAATTAAGG
8._GU_168_/H___
GGAACCGGCCCCCCCCCCGGAATTAAGG
9._GU_168_/H___
GGAACCGGCCCCCCCCCCGGAATTAAGG
10._GU_168_/H___
GGAACCGG__CCCCCCCCGGAATTAAGG
11._GU_168_/H___
GGAACCGGCCCCCCCCCCGGAATTAAGG
12._GU_168_/H___
GGAACCGGCCCCCCCCCCGGAATTAAGG
13._GU_168_/H___
GGAACCGGCCCC__CC__GG______GG
14._GU_168_/H___
GGAACCGGCCCC__CC__GG______GG
15._GU_168_/H___
GGAACCGGCCCC__CC__GG______GG
16._GU_168_/H___
GGAACCGGCCCC__CC__GG______GG
17._GU_168_/H___
GGAACCGGCCCC__CC__GG______GG
18._GU_168_/H___
GGAACCGGCCCC__CC__GG______GG
19._GU_168_/H___
GGAACCGGCCCC__CC__GG______GG
20._GU_168_/H___
GGAACCGGCCCC__CC__GG______GG
21._GU_168_/H___
GGAACCGG__CC__CC__GG______GG
22._GU_168_/H___
GGAACCGGCCCC__CC__GG______GG
23._GU_168_/H___
AACCTTTTCCCCTTTTCCGGGGTTAAGG
24._GU_168_/H___
AACCTTTTCCCC__TT__GG______GG
25._GU_168_/H___
__AA__CCCCCCGGGG__CCAAAAAACC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCCCAGCCCCGGGGTTTTTTCCCCGGAG
1._GU_168_/H___
__CCAG__CC______TT____CCGGAG
2._GU_168_/H___
____AGCC________TT______GG__
3._GU_168_/H___
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
4._GU_168_/H___
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
5._GU_168_/H___
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
6._GU_168_/H___
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
7._GU_168_/H___
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
8._GU_168_/H___
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
9._GU_168_/H___
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
10._GU_168_/H___
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
11._GU_168_/H___
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
12._GU_168_/H___
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
13._GU_168_/H___
__CCGG__CC______TT____CCCCGG
14._GU_168_/H___
__CCGG__CC______TT____CCCCGG
15._GU_168_/H___
__CCGG__CC______TT____CCCCGG
16._GU_168_/H___
__CCGG__CC______TT____CCCCGG
17._GU_168_/H___
__CCGG__CC______TT____CCCCGG
18._GU_168_/H___
__CCGG__CC______TT____CCCCGG
19._GU_168_/H___
__CCGG__CC______TT____CCCCGG
20._GU_168_/H___
__CCGG__CC______TT____CCCCGG
21._GU_168_/H___
__CCGG__CC______TT____CCCCGG
22._GU_168_/H___
__CCGG__CC______TT____CCCCGG
23._GU_168_/H___
CCCCGGTTCCGGAATTTTTTTTCTGGAA
24._GU_168_/H___
__CCGG__CC______TT____CTGGAA
25._GU_168_/H___
__GGGG__GGCCGG__AAAAGGGGGGGG

Input profile: GU_168_/H RUQ_223

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._GU_168_/H RUQ_223

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._GU_168_/H RUQ_223

identical
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

3._GU_168_/H GC-03-023-2-12

94 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

4._GU_168_/H GC-03-023-2-12

94 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

5._GU_168_/H GC-03-023-2-12

94 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP1
 Mars, 2018

6._GU_168_/H GC-03-023-2-12

94 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

7._GU_168_/H GC-03-023-2-12

94 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._GU_168_/H GC-03-023-2-12

94 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

9._GU_168_/H GC-03-023-2-12

94 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

10._GU_168_/H GC-03-023-2-12

93.9 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP3
 Mars, 2018

11._GU_168_/H GC-03-023-2-12

93.9 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

12._GU_168_/H GC-03-023-2-12

93.9 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

13._GU_168_/H

89.6 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 2
 Dapeng Zhang, 2016

14._GU_168_/H

89.6 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 4
 Dapeng Zhang, 2016

15._GU_168_/H

89.6 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 6
 Dapeng Zhang, 2016

16._GU_168_/H

89.6 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 13
 Dapeng Zhang, 2016

17._GU_168_/H

89.6 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 15
 Dapeng Zhang, 2016

18._GU_168_/H

89.6 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 1 > FP
 Dapeng Zhang, 2016

19._GU_168_/H

89.6 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 10 > F
 Dapeng Zhang, 2016

20._GU_168_/H

89.1 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 3
 Dapeng Zhang, 2016

21._GU_168_/H

89.1 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 12 > F
 Dapeng Zhang, 2016

22._GU_168_/H

89.1 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 7 > FP
 Dapeng Zhang, 2016

23._GU_168_/H GC-03-023-2-12

67.9 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

24._GU_168_/H

64.6 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 16
 Dapeng Zhang, 2016

25._GU_168_/H GC-03-23-2-12

44.4 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 12, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484