SNP Profiles of GU 144 /C   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCAATTTTGGAACCGGCCGGGGAACC
1._GU_144_/C___
____AATTTT__AACCGGCC____AA__
2._GU_144_/C___
____AATTTT__AACCGGCC____AA__
3._GU_144_/C___
____AATTTT__AACCGGCC____AA__
4._GU_144_/C___
____AATTTT__AACCGGCC____AA__
5._GU_144_/C___
____AATTTT__AACCGGCC____AA__
6._GU_144_/C___
____AATTTT__AACCGGCC____AA__
7._GU_144_/C___
____AATTTT__AACCGGCC____AA__
8._GU_144_/C___
____AATTTT__AACCGGCC____AA__
9._GU_144_/C___
____AATTTT__AACCGGCC____AA__
10._GU_144_/C___
____AATTTT__AACCGGCC____AA__
11._GU_144_/C___
____AATTTT__AACCGGCC____AA__
12._GU_144_/C___
____AATTTT__AACCGGCC____AA__
13._GU_144_/C___
____AATTTT__AACCGGCC____AA__
14._GU_144_/C___
____AATTTT__AACCGGCC____AA__
15._GU_144_/C___
____AATTTT__AACCGGCC____AA__
16._GU_144_/C___
____AATTTT__AACCGGCC____AA__
17._GU_144_/C___
____AATTTT__AACCGGCC____AA__
18._GU_144_/C___
____AATTTT__AACCGGCC____AA__
19._GU_144_/C___
____AATTTT__AACCGGCC____AA__
20._GU_144_/C___
____AA__________GG__GG______
21._GU_144_/C___
TTCCAATTTTGGAACCGGCCGGGGAACC
22._GU_144_/C___
TTCCAATTTTGGAACCGGCCGGGGAACC
23._GU_144_/C___
TTCCAATTTTGGAACCGGCCGGGGAACC
24._GU_144_/C___
TTCCAATTTTGGAACCGGCCGGGGAACC
25._GU_144_/C___
TTCCAATTTTGGAACCGGCCGGGGAACC
26._GU_144_/C___
TTCCAATTTTGGAACCGGCCGGGGAACC
27._GU_144_/C___
TTCCAATTTTGGAACCGGCCGGGGAACC
28._GU_144_/C___
TTCCAATTTTGGAACCGGCCGGGGAACC
29._GU_144_/C___
TTCCAATTTTGGAACCGGCCGGGGAACC
30._GU_144_/C___
TTCCAATTTTGGAACCGGCCGGGGAACC
31._GU_144_/C___
TTCCAATTTTGGAACCGGCCGGGGAACC
32._GU_144_/C___
TTCCAATTTTGGAACCGGCCGGGGAACC
33._GU_144_/C___
TTCCAATTTTGGAACCGGCCGGGGAACC
34._GU_144_/C___
TTCCAATTTTGGAACCGGCCGGGGAACC
35._GU_144_/C___
TTCCAATTTTGGAACCGGCCGGGGAACC
36._GU_144_/C___
TTCCAATTTTGGAACCGGCCGGGGAACC
37._GU_144_/C___
TTCCAATTTTGGAACCGGCCGGGGAACC
38._GU_144_/C___
TTCCAATTTTGGAACCGGCCGGGGAACC
39._GU_144_/C___
TTCCAATTTTGGAACCGGCCGGGGAACC
40._GU_144_/C___
TTCCAATTTTGGAACCGGCCGGGGAACC
41._GU_144_/C___
TTCCAATTTTGGAACCGGCCGGGGAACC
42._GU_144_/C___
____AATTTT__AACCGGCC____AA__
43._GU_144_/C___
____AATTTT__AACCGGCC____AA__
44._GU_144_/C___
____AATTTT__AACCGGCC____AA__
45._GU_144_/C___
TTCCACGT__GGACCCAACCGGGGAACG
46._GU_144_/C___
____ACGT____ACCCAACC____AA__
47._GU_144_/C___
TTCCCCGGTTGGACCCAATTAGGGAACG
48._GU_144_/C___
AACCAAAAAAGGAAGGGGGGGGGGAAGG
49._GU_144_/C___
AACCAAAAAAGGAAGGGGGGGGGGAAGG
50._GU_144_/C___
AACCAAAAAAGGAAGGGGGGGGGGAAGG
51._GU_144_/C___
AACCAAAAAAGGAAGGGGGGGGGGAAGG
52._GU_144_/C___
AACCAAAAAAGGAAGGGGGGGGGGAAGG
53._GU_144_/C___
____CCGGTT__ACCCAATT____AA__
54._GU_144_/C___
AACCAAAAAAGGAAGGGGGGGGGGAAGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGAACCGGCCCCCCCCCCGGAATTAAGG
1._GU_144_/C___
GGAACCGGCCCC__CC__GG______GG
2._GU_144_/C___
GGAACCGGCCCC__CC__GG______GG
3._GU_144_/C___
GGAACCGGCCCC__CC__GG______GG
4._GU_144_/C___
GGAACCGGCCCC__CC__GG______GG
5._GU_144_/C___
GGAACCGGCCCC__CC__GG______GG
6._GU_144_/C___
GGAACCGGCCCC__CC__GG______GG
7._GU_144_/C___
GGAACCGGCCCC__CC__GG______GG
8._GU_144_/C___
GGAACCGGCCCC__CC__GG______GG
9._GU_144_/C___
GGAACCGGCCCC__CC__GG______GG
10._GU_144_/C___
GGAACCGGCCCC__CC__GG______GG
11._GU_144_/C___
GGAACCGGCCCC__CC__GG______GG
12._GU_144_/C___
GGAACCGGCCCC__CC__GG______GG
13._GU_144_/C___
GGAACCGGCCCC__CC__GG______GG
14._GU_144_/C___
GGAACCGGCCCC__CC__GG______GG
15._GU_144_/C___
GGAACCGGCCCC__CC__GG______GG
16._GU_144_/C___
GGAACCGGCCCC__CC__GG______GG
17._GU_144_/C___
GGAACCGGCCCC__CC__GG______GG
18._GU_144_/C___
GGAACCGGCCCC__CC__GG______GG
19._GU_144_/C___
GGAACCGGCCCC__CC__GG______GG
20._GU_144_/C___
__AA____CCCCCC__CCGGAA__AAGG
21._GU_144_/C___
GGAACCGGCCCCCCCCTTGGAATTAAGG
22._GU_144_/C___
GGAACCGGCCCCCCCCTTGGAATTAAGG
23._GU_144_/C___
GGAACCGGCCCCCCCCTTGGAATTAAGG
24._GU_144_/C___
GGAACCGGCCCCCCCCTTGGAATTAAGG
25._GU_144_/C___
GGAACCGGCCCCCCCCTTGGAATTAAGG
26._GU_144_/C___
GGAACCGGCCCCCCCCTTGGAATTAAGG
27._GU_144_/C___
GGAACCGGCCCCCCCCTTGGAATTAAGG
28._GU_144_/C___
GGAACCGGCCCCCCCCTTGGAATTAAGG
29._GU_144_/C___
GGAACCGGCCCCCCCCTTGGAATTAAGG
30._GU_144_/C___
GGAACCGGCCCCCCCCTTGGAATTAAGG
31._GU_144_/C___
GGAACCGGCCCCCCCCTTGGAATTAAGG
32._GU_144_/C___
GGAACCGGCCCCCCCCTTGGAATTAAGG
33._GU_144_/C___
GGAACCGGCCCCCCCCTTGGAATTAAGG
34._GU_144_/C___
GGAACCGGCCCCCCCCTTGGAATTAAGG
35._GU_144_/C___
GGAACCGGCCCCCCCCTTGGAATTAAGG
36._GU_144_/C___
GGAACCGGCCCCCCCCTTGGAATTAAGG
37._GU_144_/C___
GGAACCGGCCCCCCCCTTGGAA__AAGG
38._GU_144_/C___
GGAACCGGCCCC__CCTTGGAATTAAGG
39._GU_144_/C___
AGAACCGGCCACCCCCCTGGAATTAAGG
40._GU_144_/C___
AGAACCGGCCACCCCCCTGGAATTAAGG
41._GU_144_/C___
AGAACCGGCCACCCCCCTGGAATTAAGG
42._GU_144_/C___
AGAACCGGCCAC__CC__GG______GG
43._GU_144_/C___
AGAACCGGCCAC__CC__GG______GG
44._GU_144_/C___
AGAACCGGCCAC__CC__GG______GG
45._GU_144_/C___
AACCTTTTCCACCTTTCTGGGGTTAAGG
46._GU_144_/C___
AACCTTTTCCAC__TT__GG______GG
47._GU_144_/C___
AGACCTGGGGACCCTTCTGGAGTTCCCC
48._GU_144_/C___
__AA__CCCCCCGGGG__CCAAAAAACC
49._GU_144_/C___
__AA__CCCCCCGGGG__CCAAAAAACC
50._GU_144_/C___
__AA__CCCCCCGGGG__CCAAAAAACC
51._GU_144_/C___
__AA__CCCCCCGGGG__CCAAAAAACC
52._GU_144_/C___
__AA__CCCCCCGGGG__CCAAAAAACC
53._GU_144_/C___
AGACCTGGGGAC__TT__GG______CC
54._GU_144_/C___
__AA__CCCCACGGGG__CCAAAAAACC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCCCAACCCCGGGGTTTTCTCCCCGGGG
1._GU_144_/C___
__CCAA__CC______TT____CCGGGG
2._GU_144_/C___
__CCAA__CC______TT____CCGGGG
3._GU_144_/C___
__CCAA__CC______TT____CCGGGG
4._GU_144_/C___
__CCAA__CC______TT____CCGGGG
5._GU_144_/C___
__CCAA__CC______TT____CCGGGG
6._GU_144_/C___
__CCAA__CC______TT____CCGGGG
7._GU_144_/C___
__CCAA__CC______TT____CCGGGG
8._GU_144_/C___
__CCAA__CC______TT____CCGGGG
9._GU_144_/C___
__CCAA__CC______TT____CCGGGG
10._GU_144_/C___
__CCAA__CC______TT____CCGGGG
11._GU_144_/C___
__CCAA__CC______TT____CCGGGG
12._GU_144_/C___
__CCAA__CC______TT____CCGGGG
13._GU_144_/C___
__CCAA__CC______TT____CCGGGG
14._GU_144_/C___
__CCAA__CC______TT____CCGGGG
15._GU_144_/C___
__CCAA__CC______TT____CCGGGG
16._GU_144_/C___
__CCAA__CC______TT____CCGGGG
17._GU_144_/C___
__CCAA__CC______TT____CCGGGG
18._GU_144_/C___
__CCAA__CC______TT____CCGGGG
19._GU_144_/C___
__CCAA__CC______TT____CCGGGG
20._GU_144_/C___
____AACC________TT______GG__
21._GU_144_/C___
CCCCAACCCCGGGGTTTTTTCCCCGGGG
22._GU_144_/C___
CCCCAACCCCGGGGTTTTTTCCCCGGGG
23._GU_144_/C___
CCCCAACCCCGGGGTTTTTTCCCCGGGG
24._GU_144_/C___
CCCCAACCCCGGGGTTTTTTCCCCGGGG
25._GU_144_/C___
CCCCAACCCCGGGGTTTTTTCCCCGGGG
26._GU_144_/C___
CCCCAACCCCGGGGTTTTTTCCCCGGGG
27._GU_144_/C___
CCCCAACCCCGGGGTTTTTTCCCCGGGG
28._GU_144_/C___
CCCCAACCCCGGGGTTTTTTCCCCGGGG
29._GU_144_/C___
CCCCAACCCCGGGGTTTTTTCCCCGGGG
30._GU_144_/C___
CCCCAACCCCGGGGTTTTTTCCCCGGGG
31._GU_144_/C___
CCCCAACCCCGGGGTTTTTTCCCCGGGG
32._GU_144_/C___
CCCCAACCCCGGGGTTTTTTCCCCGGGG
33._GU_144_/C___
CCCCAACCCCGGGGTTTTTTCCCCGGGG
34._GU_144_/C___
CCCCAACCCCGGGGTTTTTTCCCCGGGG
35._GU_144_/C___
CCCCAACCCCGGGGTTTTTTCCCCGGGG
36._GU_144_/C___
CCCCAACCCCGGGGTTTTTTCCCCGGGG
37._GU_144_/C___
CCCCAACCCCGGGGTTTTTTCCCCGGGG
38._GU_144_/C___
CCCCAACCCCGGGGTTTTTTCCCCGGGG
39._GU_144_/C___
CCCCGGCCCCGGGGTTTTTTCCCCCGGG
40._GU_144_/C___
CCCCGGCCCCGGGGTTTTTTCCCCCGGG
41._GU_144_/C___
__CCGGCCCCGGGGTTTTTTCCCCCGGG
42._GU_144_/C___
__CCGG__CC______TT____CCCGGG
43._GU_144_/C___
__CCGG__CC______TT____CCCGGG
44._GU_144_/C___
__CCGG__CC______TT____CCCGGG
45._GU_144_/C___
CCCCGGCTCCGGGGTTTTTTCTCCGGAA
46._GU_144_/C___
__CCGG__CC______TT____CCGGAA
47._GU_144_/C___
CGCTAGCTCCGGGGTTGTTTCCTTCCAA
48._GU_144_/C___
__GGAA__GGCCGG__AAAGGGGGCCGG
49._GU_144_/C___
__GGAA__GGCCGG__AAAGGGGGCCGG
50._GU_144_/C___
__GGAA__GGCCGG__AAAGGGGGCCGG
51._GU_144_/C___
__GGAA__GGCCGG__AAAGGGGGCCGG
52._GU_144_/C___
__GGAA__GGCCGG__AAAGGGGGCCGG
53._GU_144_/C___
__CTAG__CC______GT____TTCCAA
54._GU_144_/C___
__GGGG__GGCCGG__AAAGGGGGCGGG

Input profile: GU_144_/C RUQ_191

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._GU_144_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1409 2
 Dapeng Zhang, 2016

2._GU_144_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8619 10
 Dapeng Zhang, 2016

3._GU_144_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8620 8
 Dapeng Zhang, 2016

4._GU_144_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8620 3
 Dapeng Zhang, 2016

5._GU_144_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8620 2
 Dapeng Zhang, 2016

6._GU_144_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8620 1
 Dapeng Zhang, 2016

7._GU_144_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8619 3 > FP
 Dapeng Zhang, 2016

8._GU_144_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8619 9
 Dapeng Zhang, 2016

9._GU_144_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8619 7
 Dapeng Zhang, 2016

10._GU_144_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8619 5
 Dapeng Zhang, 2016

11._GU_144_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8619 2
 Dapeng Zhang, 2016

12._GU_144_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1409 5 > FP
 Dapeng Zhang, 2016

13._GU_144_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1409 12 > F
 Dapeng Zhang, 2016

14._GU_144_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1409 1 > FP
 Dapeng Zhang, 2016

15._GU_144_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1409 13
 Dapeng Zhang, 2016

16._GU_144_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1409 10
 Dapeng Zhang, 2016

17._GU_144_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1409 8
 Dapeng Zhang, 2016

18._GU_144_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1409 6
 Dapeng Zhang, 2016

19._GU_144_/C RUQ_191

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

20._GU_144_/C RUQ_191

identical
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

21._GU_144_/C GC-01-073-4-09

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP3
 Mars, 2018

22._GU_144_/C GC-01-073-4-09

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

23._GU_144_/C GC-01-073-4-09

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

24._GU_144_/C GC-01-073-4-09

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

25._GU_144_/C GC-01-073-4-09

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

26._GU_144_/C GC-01-073-4-09

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

27._GU_144_/C GC-01-073-4-09

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

28._GU_144_/C GC-01-073-4-09

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

29._GU_144_/C GC-08-223-6-19

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

30._GU_144_/C GC-08-223-6-19

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

31._GU_144_/C GC-08-223-6-19

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

32._GU_144_/C GC-08-223-6-19

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

33._GU_144_/C GC-08-223-6-19

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

34._GU_144_/C GC-08-224-6-20

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

35._GU_144_/C GC-08-224-6-20

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

36._GU_144_/C GC-08-224-6-20

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

37._GU_144_/C GC-08-223-6-19

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

38._GU_144_/C GC-08-224-6-20

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

39._GU_144_/C GC-01-073-4-09

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

40._GU_144_/C GC-01-073-4-09

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

41._GU_144_/C GC-08-224-6-20

91.5 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

42._GU_144_/C

89.6 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8620 7
 Dapeng Zhang, 2016

43._GU_144_/C

89.6 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1409 9
 Dapeng Zhang, 2016

44._GU_144_/C

89.6 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1409 3
 Dapeng Zhang, 2016

45._GU_144_/C GC-08-223-6-19

65.9 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP2
 Mars, 2018

46._GU_144_/C

56.5 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8619 1 > FP
 Dapeng Zhang, 2016

47._GU_144_/C GC-08-224-6-20

56 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

48._GU_144_/C GC-01-73-4-9

44.4 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 9, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

49._GU_144_/C GC-01-73-4-9

44.4 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 9, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

50._GU_144_/C RUQ_191

44.4 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

51._GU_144_/C MITC-000615

44.4 %
36 shared markers

USDA-SHRS, United States of America
 Mars, 2018

52._GU_144_/C MITC-000578

44.4 %
36 shared markers

USDA-SHRS, United States of America
 Mars, 2018

53._GU_144_/C

41.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8620 5
 Dapeng Zhang, 2016

54._GU_144_/C GC-01-73-4-9

41.7 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 9, Tree: 3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484