SNP Profiles of GU 221 /H   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCAATTTTGGAACCGGCCGGGGAACC
1._GU_136_/H___
TTCCAATTTTGGAACCGGCCGGGGAACC
2._GU_136_/H___
____AATTTT__AACCGGCC____AA__
3._GU_136_/H___
____AATTTT__AACCGGCC____AA__
4._GU_136_/H___
____AATTTT__AACCGGCC____AA__
5._GU_136_/H___
____AATTTT__AACCGGCC____AA__
6._GU_136_/H___
____AATTTT__AACCGGCC____AA__
7._GU_136_/H___
____AATTTT__AACCGGCC____AA__
8._GU_136_/H___
____AATTTT__AACCGGCC____AA__
9._GU_136_/H___
____AATTTT__AACCGGCC____AA__
10._GU_136_/H___
____AATTTT__AACCGGCC____AA__
11._GU_136_/H___
____AATTTT__AACCGGCC____AA__
12._GU_136_/H___
____AATTTT__AACCGGCC____AA__
13._GU_136_/H___
____AATTTT__AACCGGCC____AA__
14._GU_136_/H___
____AATTTT__AACCGGCC____AA__
15._GU_136_/H___
____AATTTT__AACCGGCC____AA__
16._GU_136_/H___
____AATTTT__AACCGGCC____AA__
17._GU_136_/H___
____AA__TT__AACCGGCC____AA__
18._GU_136_/H___
____AA__________GG__GG______
19._GU_136_/H___
TTCCAATTTTGGAACCGGCCGGGGAACC
20._GU_136_/H___
TTCCAATTTTGGAACCGGCCGGGGAACC
21._GU_136_/H___
TTCCAATTTTGGAACCGGCCGGGGAACC
22._GU_136_/H___
TTCCAATTTTGGAACCGGCCGGGGAACC
23._GU_136_/H___
TTCCAATTTTGGAACCGGCCGGGGAACC
24._GU_136_/H___
TTCCAATTTTGGAACCGGCCGGGGAACC
25._GU_136_/H___
TTCCAATTTTGGAACCGGCCGGGGAACC
26._GU_136_/H___
TTCCAATTTTGGAACCGGCCGGGGAACC
27._GU_136_/H___
TTCCAATTTTGGAACCGGCCGGGGAACC
28._GU_136_/H___
TTCCAATTTTGGAACCGGCCGGGGAACC
29._GU_136_/H___
TTCCAATTTTGGAACCGGCCGGGGAACC
30._GU_136_/H___
TTCCAATTTTGGAACCGGCCGGGGAACC
31._GU_136_/H___
TTCCAATTTTGGAACCGGCCGGGGAACC
32._GU_136_/H___
TTCCAA__TTGGAACCGGCCGGGGAACC
33._GU_136_/H___
AACCAAAAAAGGAAGGGGGGGGGGAAGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGAACCGGCCCCCCCCCCGGAATTAAGG
1._GU_136_/H___
GGAACCGGCCCCCCCC__GGAATTAAGG
2._GU_136_/H___
GGAACCGGCCCC__CC__GG______GG
3._GU_136_/H___
GGAACCGGCCCC__CC__GG______GG
4._GU_136_/H___
GGAACCGGCCCC__CC__GG______GG
5._GU_136_/H___
GGAACCGGCCCC__CC__GG______GG
6._GU_136_/H___
GGAACCGGCCCC__CC__GG______GG
7._GU_136_/H___
GGAACCGGCCCC__CC__GG______GG
8._GU_136_/H___
GGAACCGGCCCC__CC__GG______GG
9._GU_136_/H___
GGAACCGGCCCC__CC__GG______GG
10._GU_136_/H___
GGAACCGGCCCC__CC__GG______GG
11._GU_136_/H___
GGAACCGGCCCC__CC__GG______GG
12._GU_136_/H___
GGAACCGGCCCC__CC__GG______GG
13._GU_136_/H___
GGAACCGGCCCC__CC__GG______GG
14._GU_136_/H___
GGAACCGGCCCC__CC__GG______GG
15._GU_136_/H___
GGAACCGGCCCC__CC__GG______GG
16._GU_136_/H___
GGAACCGGCCCC__CC__GG______GG
17._GU_136_/H___
GGAACCGGCCCC__CC__GG______GG
18._GU_136_/H___
__AA____CCCCCC__CCGGAA__AAGG
19._GU_136_/H___
GGAACCGGCCCCCCCCCTGGAATTAAGG
20._GU_136_/H___
GGAACCGGCCCCCCCCCTGGAATTAAGG
21._GU_136_/H___
GGAACCGGCCCCCCCCCTGGAATTAAGG
22._GU_136_/H___
GGAACCGGCCCCCCCCCTGGAATTAAGG
23._GU_136_/H___
GGAACCGGCCCCCCCCCTGGAATTAAGG
24._GU_136_/H___
GGAACCGGCCCCCCCCCTGGAATTAAGG
25._GU_136_/H___
GGAACCGGCCCCCCCCCTGGAATTAAGG
26._GU_136_/H___
GGAACCGGCCCCCCCCCTGGAATTAAGG
27._GU_136_/H___
GGAACCGGCCCCCCCCCTGGAATTAAGG
28._GU_136_/H___
GGAACCGGCCCCCCCCCTGGAATTAAGG
29._GU_136_/H___
GGAACCGGCCCCCCCCCTGGAATTAAGG
30._GU_136_/H___
GGAACCGGCCCCCCCCCTGGAATTAAGG
31._GU_136_/H___
GGAACCGGCCCCCCCCCTGGAATTAAGG
32._GU_136_/H___
GGAACCGGCCCCCCCCCTGGAATTAAGG
33._GU_136_/H___
__AA__CCCCCCGGGG__CCAAAAAACC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCCCAACCCCGGGGTTTTTTCCCCGGGG
1._GU_136_/H___
CCCCAACCCCGGGGTTTTTTCCCCGGGG
2._GU_136_/H___
__CCAA__CC______TT____CCGGGG
3._GU_136_/H___
__CCAA__CC______TT____CCGGGG
4._GU_136_/H___
__CCAA__CC______TT____CCGGGG
5._GU_136_/H___
__CCAA__CC______TT____CCGGGG
6._GU_136_/H___
__CCAA__CC______TT____CCGGGG
7._GU_136_/H___
__CCAA__CC______TT____CCGGGG
8._GU_136_/H___
__CCAA__CC______TT____CCGGGG
9._GU_136_/H___
__CCAA__CC______TT____CCGGGG
10._GU_136_/H___
__CCAA__CC______TT____CCGGGG
11._GU_136_/H___
__CCAA__CC______TT____CCGGGG
12._GU_136_/H___
__CCAA__CC______TT____CCGGGG
13._GU_136_/H___
__CCAA__CC______TT____CCGGGG
14._GU_136_/H___
__CCAA__CC______TT____CCGGGG
15._GU_136_/H___
__CCAA__CC______TT____CCGGGG
16._GU_136_/H___
__CCAA__CC____________CCGGGG
17._GU_136_/H___
__CCAA__CC______TT____CCGGGG
18._GU_136_/H___
____AACC________TT______GG__
19._GU_136_/H___
CCCCAACCCCGGGGTTTTTTCCCCGGGG
20._GU_136_/H___
CCCCAACCCCGGGGTTTTTTCCCCGGGG
21._GU_136_/H___
CCCCAACCCCGGGGTTTTTTCCCCGGGG
22._GU_136_/H___
CCCCAACCCCGGGGTTTTTTCCCCGGGG
23._GU_136_/H___
CCCCAACCCCGGGGTTTTTTCCCCGGGG
24._GU_136_/H___
CCCCAACCCCGGGGTTTTTTCCCCGGGG
25._GU_136_/H___
CCCCAACCCCGGGGTTTTTTCCCCGGGG
26._GU_136_/H___
CCCCAACCCCGGGGTTTTTTCCCCGGGG
27._GU_136_/H___
CCCCAACCCCGGGGTTTTTTCCCCGGGG
28._GU_136_/H___
CCCCAACCCCGGGGTTTTTTCCCCGGGG
29._GU_136_/H___
CCCCAACCCCGGGGTTTTTTCCCCGGGG
30._GU_136_/H___
CCCCAACCCCGGGGTTTTTTCCCCGGGG
31._GU_136_/H___
CCCCAACCCCGGGGTT__TTCCCCGGGG
32._GU_136_/H___
CCCCAACCCCGGGGTTTTTTCCCCGGGG
33._GU_136_/H___
__GGAA__GGCCGG__AAAAGGGGCCGG

Input profile: GU_136_/H RUQ_221

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._GU_136_/H GC-03-019-2-08

identical
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

2._GU_136_/H

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 1
 Dapeng Zhang, 2016

3._GU_136_/H

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 7 > FP
 Dapeng Zhang, 2016

4._GU_136_/H

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 14 > F
 Dapeng Zhang, 2016

5._GU_136_/H

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 10 > F
 Dapeng Zhang, 2016

6._GU_136_/H

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 16
 Dapeng Zhang, 2016

7._GU_136_/H

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 13
 Dapeng Zhang, 2016

8._GU_136_/H

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 11
 Dapeng Zhang, 2016

9._GU_136_/H

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 8
 Dapeng Zhang, 2016

10._GU_136_/H

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 6
 Dapeng Zhang, 2016

11._GU_136_/H

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 5
 Dapeng Zhang, 2016

12._GU_136_/H

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 4
 Dapeng Zhang, 2016

13._GU_136_/H

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 3
 Dapeng Zhang, 2016

14._GU_136_/H

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 2
 Dapeng Zhang, 2016

15._GU_136_/H RUQ_221

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._GU_136_/H

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 9 > FP
 Dapeng Zhang, 2016

17._GU_136_/H

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 12
 Dapeng Zhang, 2016

18._GU_136_/H RUQ_221

identical
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

19._GU_136_/H GC-03-019-2-08

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

20._GU_136_/H GC-03-019-2-08

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

21._GU_136_/H GC-03-019-2-08

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

22._GU_136_/H GC-03-019-2-08

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

23._GU_136_/H GC-03-019-2-08

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

24._GU_136_/H GC-03-019-2-08

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

25._GU_136_/H GC-03-019-2-08

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

26._GU_136_/H GC-03-019-2-08

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

27._GU_136_/H GC-03-019-2-08

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

28._GU_136_/H GC-03-019-2-08

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

29._GU_136_/H GC-03-019-2-08

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

30._GU_136_/H GC-03-019-2-08

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

31._GU_136_/H GC-03-019-2-08

98.8 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

32._GU_136_/H GC-03-019-2-08

98.8 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

33._GU_136_/H GC-03-19-2-8

44.4 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 8, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484