SNP Profiles of GU 133 /C   View Data

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 Key

 1234567891011121314
_Input profile
TTCCAATTTTGGAACCGGCCGGGGAACC
1._GC-08-164-4-07
TTCCAATTTTGGAACCGGCCGGGGAACC
2._GC-01-116-6-13
TTCCAATTTTGGAACCGGCCGGGGAACC
3._GC-01-116-6-13
TTCCAATTTTGGAACCGGCCGGGGAACC
4._GC-01-116-6-13
TTCCAATTTTGGAACCGGCCGGGGAACC
5._GC-08-164-4-07
TTCCAATTTTGGAACCGGCCGGGGAACC
6._GC-08-164-4-07
TTCCAATTTTGGAACCGGCCGGGGAACC
7._GC-01-116-6-13
TTCCAATTTTGGAACC__CCGGGGAACC
8._GC-08-164-4-07
TTCCAATTTTGG__CCGGCCGGGGAACC
9._GC-08-164-4-07
TTCCAATTTTGGAACCGGCCGGGGAACC
10._GC-08-164-4-07
TTCCAATTTTGGAACCGGCCGGGGAACC
11._GC-01-116-6-13
TTCCAATTTTGGAACC__CCGGGGAACC
12._GU_133_/C
____AATTTT__AACCGGCC____AA__
13._GU_133_/C
____AATTTT__AACCGGCC____AA__
14._GU_133_/C
____AATTTT__AACCGGCC____AA__
15._GU_133_/C
____AATTTT__AACCGGCC____AA__
16._GU_133_/C
____AATTTT__AACCGGCC____AA__
17._GU_133_/C
____AATTTT__AACCGGCC____AA__
18._GU_133_/C
____AATTTT__AACC__CC____AA__
19._GU_133_/C
____AATTTT____CCGGCC____AA__
20._GU_133_/C
____AATTTT__AACCGGCC____AA__
21._GU_133_/C
____AATTTT__AACCGGCC____AA__
22._GU_133_/C
____AATTTT__AACC__CC____AA__
23._RUQ_190
____AA__________GG__GG______
24._RUQ_190
____AAGTTT__AACCGGCC____AA__
25._RUQ_190
____AA__TTGGAAGGGG____GGAACC
26._GC-01-116-6-13
AACCAAAAAAGGAAGGGGGGGGGGAAGG
27._MITC-000670
AACCAAAAAAGGAAGGGGGGGGGGAAGG
 1516171819202122232425262728
_Input profile
GGAACCGGCCACCCCCCCGGAATTAAGG
1._GC-08-164-4-07
GGAACCGGCCACCCCCCCGGAATTAAGG
2._GC-01-116-6-13
GGAACCGGCCACCCCCCCGGAATTAAGG
3._GC-01-116-6-13
GGAACCGGCCACCCCCCCGGAATTAAGG
4._GC-01-116-6-13
GGAACCGGCCACCCCCCCGGAATTAAGG
5._GC-08-164-4-07
GGAACCGGCCACCCCCCCGGAATTAAGG
6._GC-08-164-4-07
GGAACCGGCCACCCCC__GGAATTAAGG
7._GC-01-116-6-13
GGAACCGGCCACCCCCCCGGAATTAAGG
8._GC-08-164-4-07
GGAACCGGCCACCCCCCCGGAATTAAGG
9._GC-08-164-4-07
GGAA__GGCCACCCCCCCGGAATTAAGG
10._GC-08-164-4-07
GGAACCGGCCACCCCCCCGGAATTAAGG
11._GC-01-116-6-13
GGAACCGGCCACCCCCCCGGAATTAAGG
12._GU_133_/C
GGAACCGGCCAC__CC__GG______GG
13._GU_133_/C
GGAACCGGCCAC__CC__GG______GG
14._GU_133_/C
GGAACCGGCCAC__CC__GG______GG
15._GU_133_/C
GGAACCGGCCAC__CC__GG______GG
16._GU_133_/C
GGAACCGGCCAC__CC__GG______GG
17._GU_133_/C
GGAACCGGCCAC__CC__GG______GG
18._GU_133_/C
GGAACCGGCCAC__CC__GG______GG
19._GU_133_/C
GGAACCGGCCAC__CC__GG______GG
20._GU_133_/C
GGAA__GGCCAC__CC__GG______GG
21._GU_133_/C
GGAACCGGCCAC__CC__GG______GG
22._GU_133_/C
GGAACCGGCCAC__CC__GG______GG
23._RUQ_190
__AA____CCACCC__CCGGAA__AAGG
24._RUQ_190
GGAACCGGCCAC__CC__GG______GG
25._RUQ_190
________CCACCC____________CC
26._GC-01-116-6-13
__AA__CCCCACGGGG__CCAAAAAACC
27._MITC-000670
__AA__CCCCACGGGG__CCAAAAAACC
 2930313233343536373839404142
_Input profile
CCCCGGCCCCGGGGTTTTTTCCCCCGGG
1._GC-08-164-4-07
CCCCGGCCCCGGGGTTTTTTCCCCCGGG
2._GC-01-116-6-13
CCCCGGCCCCGGGGTTTTTTCCCCCGGG
3._GC-01-116-6-13
CCCCGGCCCCGGGGTTTTTTCCCCCGGG
4._GC-01-116-6-13
CCCCGGCCCCGGGGTTTTTTCCCCCGGG
5._GC-08-164-4-07
CCCCGGCCCCGGGGTTTTTTCCCCCGGG
6._GC-08-164-4-07
CCCCGGCCCCGGGGTTTTTTCCCCCGGG
7._GC-01-116-6-13
CCCCGGCCCCGGGGTTTTTTCCCCCGGG
8._GC-08-164-4-07
CCCCGGCCCCGGGGTTTTTTCCCCCGGG
9._GC-08-164-4-07
CCCCGGCCCCGGGGTTTTTTCCCCCGGG
10._GC-08-164-4-07
CCCCGGCCCCGGGGTT__TTCCCCCGGG
11._GC-01-116-6-13
CC__GGCCCCGGGGTT__TTCCCCCGGG
12._GU_133_/C
__CCGG__CC______TT____CCCGGG
13._GU_133_/C
__CCGG__CC______TT____CCCGGG
14._GU_133_/C
__CCGG__CC______TT____CCCGGG
15._GU_133_/C
__CCGG__CC______TT____CCCGGG
16._GU_133_/C
__CCGG__CC______TT____CCCGGG
17._GU_133_/C
__CCGG__CC______TT____CCCGGG
18._GU_133_/C
__CCGG__CC______TT____CCCGGG
19._GU_133_/C
__CCGG__CC______TT____CCCGGG
20._GU_133_/C
__CCGG__CC______TT____CCCGGG
21._GU_133_/C
__CCGG__CC____________CCCGGG
22._GU_133_/C
____GG__CC____________CCCGGG
23._RUQ_190
____GGCC________TT______CG__
24._RUQ_190
__CCGG__CC______TT____CCCGGG
25._RUQ_190
GGCC____CC__GGTT____CC__CG__
26._GC-01-116-6-13
__GGGG__GGCCGG__AAAAGGGGCGGG
27._MITC-000670
__GGGG__GGCCGG__AAAAGGGGCGGG

Input profile: GU_133_/C RUQ_190

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._GU_133_/C GC-08-164-4-07

identical
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

2._GU_133_/C GC-01-116-6-13

identical
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

3._GU_133_/C GC-01-116-6-13

identical
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

4._GU_133_/C GC-01-116-6-13

identical
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._GU_133_/C GC-08-164-4-07

identical
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

6._GU_133_/C GC-08-164-4-07

identical
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

7._GU_133_/C GC-01-116-6-13

identical
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._GU_133_/C GC-08-164-4-07

identical
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._GU_133_/C GC-08-164-4-07

identical
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._GU_133_/C GC-08-164-4-07

identical
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

11._GU_133_/C GC-01-116-6-13

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP3
 Mars, 2018

12._GU_133_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

13._GU_133_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 3 > FP
 Dapeng Zhang, 2016

14._GU_133_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 9 > FP
 Dapeng Zhang, 2016

15._GU_133_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 1
 Dapeng Zhang, 2016

16._GU_133_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 2
 Dapeng Zhang, 2016

17._GU_133_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 11
 Dapeng Zhang, 2016

18._GU_133_/C

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 1 > FP
 Dapeng Zhang, 2016

19._GU_133_/C

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 3
 Dapeng Zhang, 2016

20._GU_133_/C

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 8
 Dapeng Zhang, 2016

21._GU_133_/C

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 10
 Dapeng Zhang, 2016

22._GU_133_/C

identical
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 10 > F
 Dapeng Zhang, 2016

23._GU_133_/C RUQ_190

identical
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

24._GU_133_/C RUQ_190

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

25._GU_133_/C RUQ_190

85 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

26._GU_133_/C GC-01-116-6-13

47.2 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 13, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

27._GU_133_/C MITC-000670

47.2 %
36 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484