SNP Profiles of GU 123/V   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCAATTTTGGAACCGGCCGGGGAACC
1._RUQ_1068
____AA__________GG__GG______
2._RUQ_187
TTCCAATTTTGGAACCGGCCGGGGAACC
3._RUQ_187
____AA__________GG__GG______
4._RUQ_1068
AACCAAAAAAGGAAGGGGGGGGGGAAGG
5._MITC-000597
AACCAAAAAAGGAAGGGGGGGGGGAAGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AGAACCGGCCCCCCTTCCGGAATTAAGG
1._RUQ_1068
__AA____CCCCCC__CCGGAA__AAGG
2._RUQ_187
AGAACCGGCCCCCCTTCCGGAATTAAGG
3._RUQ_187
__AA____CCCCCC__CCGGAA__AAGG
4._RUQ_1068
__AA__CCCCCCGGAA__CCAAAAAACC
5._MITC-000597
__AA__CCCCCCGGAA__CCAAAAAACC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCCCAGCCCCGGGGTTTTTTCCCCGGGG
1._RUQ_1068
______CC________TT______GG__
2._RUQ_187
CCCCAACCCCGGGGTTTTTTCCCCGGGG
3._RUQ_187
____AACC________TT______GG__
4._RUQ_1068
__GGAG__GGCCGG__AAAAGGGGCCGG
5._MITC-000597
__GGAG__GGCCGG__AAAAGGGGCCGG

Input profile: GU_123_/V RUQ_1068

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._GU_123_/V RUQ_1068

identical
15 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

2._GU_123_/V RUQ_187

98.8 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._GU_123_/V RUQ_187

96.9 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

4._GU_123_/V RUQ_1068

44.4 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

5._GU_123_/V MITC-000597

44.4 %
36 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484