SNP Profiles of PA 7 [PER]   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ACACAGACAAGGGGCCAAGGGGAAAGAC
1._PA_70_[PER]___
AACCAGACAAGGAGCCAAGGGGAAAGAC
2._PA_70_[PER]___
AACCAGACAAGGAGCCAAGGGGAAAGAC
3._PA_70_[PER]___
AACCAGACAAGGAGCCAAGGGGAAAGAC
4._PA_70_[PER]___
AACCAGACAAGGAGCCAAGGGGAAAGAC
5._PA_70_[PER]___
____________AG______________
6._PA_70_[PER]___
__________CC________GG______
7._PA_70_[PER]___
AACCAGACTTCCAGGGAACCGGTTCTGT
8._PA_70_[PER]___
__________CCAG__AA__________
9._PA_70_[PER]___
__________CC__GG____GG______
10._PA_70_[PER]___
__________CCAG__AA__________
11._PA_70_[PER]___
__________CCAG__AA__________
12._PA_70_[PER]___
__________TTAA__AA__________
13._PA_70_[PER]___
CCACGGAACTTTAAGTAACCAATTTTGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAGAGCCGGAAGGAAAGCGAGCCAG
1._PA_70_[PER]___
AAAAGGAGACGGAAGGAAAGCCAGCCGG
2._PA_70_[PER]___
AAAAGGAGACGGAAGGAAAGCCAGCCGG
3._PA_70_[PER]___
AAAAGGAGACGGAAGGAAAGCCAGCCGG
4._PA_70_[PER]___
AAAAGGAGACGGAAGGAAAGCCAGCCGG
5._PA_70_[PER]___
__TT____________AA__GG______
6._PA_70_[PER]___
______________CCAA__CC____CC
7._PA_70_[PER]___
TTTTCCTTACGGTTCCAACTGGAGGGCC
8._PA_70_[PER]___
__TTCC__AC__TT__AACTGGAGGGCC
9._PA_70_[PER]___
__TT__CT______CCAACTGGAGGGCC
10._PA_70_[PER]___
__TTCC__AC__TT__AACTGGAGGGCC
11._PA_70_[PER]___
__TTCC__AC__TT__AACTGGAGGGCC
12._PA_70_[PER]___
__TTCC__AA__TT__AACTGGAAGTCC
13._PA_70_[PER]___
CCTTCCTTAAGGTTTTAACTGGAAGTCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AGTTGGACGGAGGGGGGGCCTTATGGGG
1._PA_70_[PER]___
GGATGGAAGGAGGGGGGGCCTTATGGGG
2._PA_70_[PER]___
GGATGGAAGGAGGGGGGGCCTTATGGGG
3._PA_70_[PER]___
GGATGGAAGGAGGGGGGGCCTTATGGGG
4._PA_70_[PER]___
GGATGGAAGGAGGGGGGGCCTTATGGGG
5._PA_70_[PER]___
__________AG____________GG__
6._PA_70_[PER]___
____GGAAGGAG______________GG
7._PA_70_[PER]___
CCATGGAACCAGGGCCGGGGAAATGGGG
8._PA_70_[PER]___
CC____AA__AG__CCGG____AT____
9._PA_70_[PER]___
____GGAACCAG__CC________GGGG
10._PA_70_[PER]___
CC____AACCAG__CCGG____AT____
11._PA_70_[PER]___
CC____AACCAG__CCGG____AT____
12._PA_70_[PER]___
TT____AACGAG__CTGG____AT____
13._PA_70_[PER]___
TTAAAGAACGAGGGCTGGGGATATAGAA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAAGAAGGGGAAGGGGCCAAAAAGGGCC
1._PA_70_[PER]___
AAAAAGGGGGAAGGGGCCAAAGAGCGAC
2._PA_70_[PER]___
AAAAAGGGGGAAGGGGCCAAAGAGCGAC
3._PA_70_[PER]___
AAAAAGGGGGAAGGGGCCAAAGAGCGAC
4._PA_70_[PER]___
AAAAAGGGGGAAGG__CCAAAGAGCGAC
5._PA_70_[PER]___
__________________AA____CGAC
6._PA_70_[PER]___
AATT________CC__________CGAC
7._PA_70_[PER]___
AATTAGGGGGAACC__CCAAAGAGCGAC
8._PA_70_[PER]___
AA______GG________AA____CGAC
9._PA_70_[PER]___
AA__________CC____AA____CGAC
10._PA_70_[PER]___
AA______GG________AA____CGAC
11._PA_70_[PER]___
AA______GG________AA____CGAC
12._PA_70_[PER]___
AT______GG________CC____CCAC
13._PA_70_[PER]___
ATCTAGGGGGAACG__CCCCGGAACCAC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGGGAAAGAACCAGAAACCCAAAACCGG
1._PA_70_[PER]___
GGAGAAAGAACCGGAAAACCAAAAGGGG
2._PA_70_[PER]___
GGAGAAAGAACCGGAAAACCAAAAGGGG
3._PA_70_[PER]___
GGAGAAAGAACCGGAAAACCAAAAGGGG
4._PA_70_[PER]___
GGAGAAAGAACCGGAAAACCAAAAGGGG
5._PA_70_[PER]___
__CT______GGGG________AATT__
6._PA_70_[PER]___
__CT____________TT________GG
7._PA_70_[PER]___
CCCTTTAAAAGGGGTTTTGGTTAACC__
8._PA_70_[PER]___
____TT____GG________________
9._PA_70_[PER]___
__CTTT____GGGGTT____TTAA____
10._PA_70_[PER]___
____TT____GG________________
11._PA_70_[PER]___
____TT____GG________________
12._PA_70_[PER]___
____TT____GT________________
13._PA_70_[PER]___
CTCTTTAGAGGTGGCTGTGTGTACGGAA
 71 72 73 74 75 76 77 78 79 80 81    
_Input profile
CCGGGGGGCCGGCCGGAAGGAGX_XX_XX_X
1._PA_70_[PER]___
CCGGGGGGCCAGCGGGAAGGAGX_XX_XX_X
2._PA_70_[PER]___
CCGGGGGGCCAGCGGGAAGGAGX_XX_XX_X
3._PA_70_[PER]___
CCGGGGGGCCAGCGGGAAGGAGX_XX_XX_X
4._PA_70_[PER]___
CCGGGGGGCCAGCGGGAAGGAGX_XX_XX_X
5._PA_70_[PER]___
GG____GG____________AGX_XX_XX_X
6._PA_70_[PER]___
CCCC______________CC__X_XX_XX_X
7._PA_70_[PER]___
GGCCCCGGCCCTCGCCAACCAGX_XX_XX_X
8._PA_70_[PER]___
GGCC______CTCG__AACCAGX_XX_XX_X
9._PA_70_[PER]___
GGCC__GGCC__________AGX_XX_XX_X
10._PA_70_[PER]___
GGCC______CTCG__AACCAGX_XX_XX_X
11._PA_70_[PER]___
GGCC______CTCG__AACCAGX_XX_XX_X
12._PA_70_[PER]___
CGCC______TTGG__AATTAGX_XX_XX_X
13._PA_70_[PER]___
CGCCCCAAAATTGGTTAATTAGX_XX_XX_X

Input profile: PA_70_[PER] PA_70_[PER]_Fld#_185_Plt#_1

 
USDA-TARS, United States of America
Location: Field: 185, Tree: 1
 Mars, 2018

1._PA_70_[PER] GC-04-53-3-17

86.4 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 4, Block: 3, Rep: 17, Tree: 6 > FP2 (verde)
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

2._PA_70_[PER] MITC-000025

86.4 %
81 shared markers

USDA-SHRS, United States of America
 Mars, 2018

3._PA_70_[PER] MITC-000026

86.4 %
81 shared markers

USDA-SHRS, United States of America
 Mars, 2018

4._PA_70_[PER] RUQ_33

86.3 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

5._PA_70_[PER] RUQ_33

55.9 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

6._PA_70_[PER] PA70[PER]

50 %
22 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

7._PA_70_[PER] GC-04-053-3-17

44.3 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP2 (verde)
 Mars, 2018

8._PA_70_[PER]

43.9 %
33 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D634
 Dapeng Zhang, 2016

9._PA_70_[PER] RUQ_33

43.1 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

10._PA_70_[PER]

42.6 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4317 6 > FP
 Dapeng Zhang, 2016

11._PA_70_[PER] RUQ_33

42.6 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

12._PA_70_[PER]

33.8 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4317 2 > FP
 Dapeng Zhang, 2016

13._PA_70_[PER] GC-04-053-3-17

30.6 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1 (roxo)
 Mars, 2018

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998