SNP Profiles of ICS 43   View Data

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 Key

 1234567891011121314
_Input profile
CCCCAGAAAAAGAAACAAGGAGAAAACC
1._RUQ_144
CCCCAGAAAAAGAAACAAGGAGAAAACC
2._RUQ_144
____________AA______________
3._ICS43
__________CT________AG______
4._RUQ_144
__________CT____AA__________
5._ICS_43
__________CTAA__AA__________
6._RUQ_144
__________CT__GT____AG______
7._ICS_43
__________CCGG__AA__________
8._ICS_43
__________CCGG__AA__________
9._ICS_43
__________CCGG__AA__________
10._ICS_43
__________CCGG__AA__________
11._ICS_43
__________CCGG__AA__________
12._ICS_43
__________CCGG__AA__________
13._ICS_43
__________CCGG__AA__________
14._ICS_43
__________CCGG__AA__________
15._ICS_43
__________CCGG__AA__________
16._GC-01-051-3-06
CCAAAGCCTTCCGGGGAACCGG__CCTT
17._GC-01-051-3-06
CCAAAGCCTTCCGGGGAACCGGTTCCTT
18._GC-01-051-3-06
CCAAAGCCTTCCGGGGAACCGGTTCCTT
19._GC-01-051-3-06
CCAAAGCCTTCCGGGGAACCGGTTCCTT
20._GC-01-051-3-06
CCAAAGCCTTCCGGGGAACCGGTTCCTT
21._GC-01-051-3-06
CCAAAGCCTTCCGGGGAACCGGTTCCTT
22._GC-01-051-3-06
CCAAAGCCTTCCGGGGAACCGGTTCCTT
23._GC-01-051-3-06
CCAAAGCCTTCCGGGGAACCGGTTCCTT
24._GC-01-051-3-06
CCAAAGCCTTCCGGGGAACCGGTTCCTT
25._ICS_43
__________CCGG__AA__________
26._GC-01-051-3-06
CCAAAGCCTTCCGGGGAACCGGTTCCTT
 1516171819202122232425262728
_Input profile
AGAAGGAGAAGGAAAGACAGCCAGACAG
1._RUQ_144
AGAAGGAGAAGGAAAGACAGCCAGACAG
2._RUQ_144
__GT____________AC__GG______
3._ICS43
______________CTAC__CC____CT
4._RUQ_144
__GTCC__AA__TT__ACCTGGAGGTCT
5._ICS_43
__GTCC__AA__TT__ACCTGGAGGTCT
6._RUQ_144
__GT__CT______CTACCTGGAGGTCT
7._ICS_43
__TTTT______TT__AACCCCGGTTTT
8._ICS_43
__TTTT______TT__AACCCCGGTTTT
9._ICS_43
__TTTT______TT__AACCCCGGTTTT
10._ICS_43
__TTTT______TT__AACCCCGGTTTT
11._ICS_43
__TTTT______TT__AACCCCGGTTTT
12._ICS_43
__TTTT______TT__AACCCCGGTTTT
13._ICS_43
__TTTT______TT__AACCCCGGTTTT
14._ICS_43
__TTTT______TT__AACCCCGGTTTT
15._ICS_43
__TTTT______TT__AACCCCGGTTTT
16._GC-01-051-3-06
TTTTTTTT__GGTTCCAACCCCGGTTTT
17._GC-01-051-3-06
TTTTTTTT__GGTTCCAACCCCGGTTTT
18._GC-01-051-3-06
TTTTTTTT__GGTTCCAACCCCGGTTTT
19._GC-01-051-3-06
TTTTTTTT__GGTTCCAACCCCGGTTTT
20._GC-01-051-3-06
TTTTTTTT__GGTTCCAACCCCGGTTTT
21._GC-01-051-3-06
TTTTTTTT__GGTTCCAACCCCGGTTTT
22._GC-01-051-3-06
TTTTTTTT__GGTTCCAACCCCGGTTTT
23._GC-01-051-3-06
TTTTTTTT__GGTTCCAACCCCGGTTTT
24._GC-01-051-3-06
TTTTTTTT__GGTTCCAACCCCGGTTTT
25._ICS_43
__TTTT______TT__AACCCCGGTTTT
26._GC-01-051-3-06
TTTTTTTT__GGTTCCAACCCCGGTTTT
 2930313233343536373839404142
_Input profile
AGTTGGACCGGGGGAGGGCCATTTAGAG
1._RUQ_144
AGTTGGACCGGGGGAGGGCCATTTAGAG
2._RUQ_144
__________GG____________AG__
3._ICS43
____GGACCGGG______________AG
4._RUQ_144
CT____ACCGGG__CTGG____TT____
5._ICS_43
CT____AC__GG__CTGG____TT____
6._RUQ_144
____GGACCGGG__CT________AGAG
7._ICS_43
CC____AACCGG__CCGG____AA____
8._ICS_43
CC____AACCGG__CCGG____AA____
9._ICS_43
CC____AACCGG__CCGG____AA____
10._ICS_43
CC____AACCGG__CCGG____AA____
11._ICS_43
CC____AACCGG__CCGG____AA____
12._ICS_43
CC____AACCGG__CCGG____AA____
13._ICS_43
CC____AACCGG__CCGG____AA____
14._ICS_43
CC____AACCGG__CCGG____AA____
15._ICS_43
CC____AACCGG__CCGG____AA____
16._GC-01-051-3-06
CCAAGGAACCGGGGCCGGGGAAAAGGGG
17._GC-01-051-3-06
CCAAGGAACCGGGGCCGGGGAAAAGGGG
18._GC-01-051-3-06
CCAAGGAACCGGGGCCGGGGAAAAGGGG
19._GC-01-051-3-06
CCAAGGAACCGGGGCCGGGGAAAAGGGG
20._GC-01-051-3-06
CCAAGGAACCGGGGCCGGGGAAAAGGGG
21._GC-01-051-3-06
CCAAGGAACCGGGGCCGGGGAAAAGGGG
22._GC-01-051-3-06
CCAAGGAACCGGGGCCGGGGAAAAGGGG
23._GC-01-051-3-06
CCAAGGAACCGGGGCCGGGGAAAAGGGG
24._GC-01-051-3-06
CCAAGGAACCGGGGCCGGGGAAAAGGGG
25._ICS_43
CC____AACC____CCGG____AA____
26._GC-01-051-3-06
CCAAGGAACC__GGCCGGGGAAAAGGGG
 4344454647484950515253545556
_Input profile
AAAGAGAGGGATGGAGCCCCGGAAAACC
1._RUQ_144
AAAGAGAGGGATGGAGCCCCGGAAAACC
2._RUQ_144
__________________CC______CC
3._ICS43
AACT________CC____________CC
4._RUQ_144
AA______AG________CC__TT__CC
5._ICS_43
AA______AG________CC__TT__CC
6._RUQ_144
AA__________CC____CC__TT__CC
7._ICS_43
AA______GG________AA__GG__CC
8._ICS_43
AA______GG________AA__GG__CC
9._ICS_43
AA______GG________AA__GG__CC
10._ICS_43
AA______GG________AA__GG__CC
11._ICS_43
AA______GG________AA__GG__CC
12._ICS_43
AA______GG________AA__GG__CC
13._ICS_43
AA______GG________AA__GG__CC
14._ICS_43
AA______GG________AA__GG__CC
15._ICS_43
AA______GG________AA__GG__CC
16._GC-01-051-3-06
AATTGGGGGGTTCC__CCAAGGGGGGCC
17._GC-01-051-3-06
AATTGGGGGGTTCC__CCAAGGGGGGCC
18._GC-01-051-3-06
AATTGGGGGGTTCC__CCAAGGGGGGCC
19._GC-01-051-3-06
AATTGGGGGGTTCC__CCAAGGGGGGCC
20._GC-01-051-3-06
AATTGGGGGGTTCC__CCAAGGGGGGCC
21._GC-01-051-3-06
AATTGGGGGGTTCC__CCAAGGGGGGCC
22._GC-01-051-3-06
AATTGGGGGGTTCC__CCAAGGGGGGCC
23._GC-01-051-3-06
AATTGGGGGGTTCC__CCAAGGGGGGCC
24._GC-01-051-3-06
AATTGGGGGGTTCC__CCAAGGGGGGCC
25._ICS_43
AA______GG________AA__GG__CC
26._GC-01-051-3-06
AATTGGGGGGTTCC__CCAAGGGGGGCC
 5758596061626364656667686970
_Input profile
AAGGAGAAAGAGACAGAGACACACCCCC
1._RUQ_144
AAGGAGAAAGAGACAGAGACACACCCCC
2._RUQ_144
AA__CT______GTAG________CCTT
3._ICS43
AA__CT____________GT________
4._RUQ_144
AA____TT____GT______________
5._ICS_43
AA____TT____GT______________
6._RUQ_144
AA__CTTT____GTAGCT____GTCC__
7._ICS_43
CC____CC____GG______________
8._ICS_43
CC____CC____GG______________
9._ICS_43
CC____CC____GG______________
10._ICS_43
CC____CC____GG______________
11._ICS_43
CC____CC____GG______________
12._ICS_43
CC____CC____GG______________
13._ICS_43
CC____CC____GG______________
14._ICS_43
CC____CC____GG______________
15._ICS_43
CC____CC____GG______________
16._GC-01-051-3-06
CCCCCCCCAAAAGGAATTGGTTTTAAGG
17._GC-01-051-3-06
CCCCCCCCAAAAGGAATTGGTTTTAAGG
18._GC-01-051-3-06
CCCCCCCCAAAAGGAATTGGTTTTAAGG
19._GC-01-051-3-06
CCCCCCCCAAAAGGAATTGGTTTTAAGG
20._GC-01-051-3-06
CCCCCCCCAAAAGGAATTGGTTTTAAGG
21._GC-01-051-3-06
CCCCCCCCAAAAGGAATTGGTTTTAAGG
22._GC-01-051-3-06
CCCCCCCCAAAAGGAATTGGTTTTAAGG
23._GC-01-051-3-06
CCCCCCCCAAAAGGAATTGGTTTTAAGG
24._GC-01-051-3-06
CCCCCCCCAAAAGGAATTGGTTTTAAGG
25._ICS_43
CC____CC____GG______________
26._GC-01-051-3-06
CCCCCCCCAAAAGGAATTGGTTTTAAGG
 717273747576777879808182  
_Input profile
AGCCGGGGGGACAAGGGGAAAGAAX_XX_X
1._RUQ_144
AGCCGGGGGGACAAGGGGAAAGAAX_XX_X
2._RUQ_144
__GG____GG____________AAX_XX_X
3._ICS43
AGCCCC______________CT__X_XX_X
4._RUQ_144
__GGCC______TTGG__AACTAAX_XX_X
5._ICS_43
__GGCC______TTGG__AACTAAX_XX_X
6._RUQ_144
__GGCC____AC__________AAX_XX_X
7._ICS_43
__GGCC______CCGG__AACCGGX_XX_X
8._ICS_43
__GGCC______CCGG__AACCGGX_XX_X
9._ICS_43
__GGCC______CCGG__AACCGGX_XX_X
10._ICS_43
__GGCC______CCGG__AACCGGX_XX_X
11._ICS_43
__GGCC______CCGG__AACCGGX_XX_X
12._ICS_43
__GGCC______CCGG__AACCGGX_XX_X
13._ICS_43
__GGCC______CCGG__AACCGGX_XX_X
14._ICS_43
__GGCC______CCGG__AACCGGX_XX_X
15._ICS_43
__GGCC______CCGG__AACCGGX_XX_X
16._GC-01-051-3-06
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
17._GC-01-051-3-06
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
18._GC-01-051-3-06
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
19._GC-01-051-3-06
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
20._GC-01-051-3-06
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
21._GC-01-051-3-06
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
22._GC-01-051-3-06
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
23._GC-01-051-3-06
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
24._GC-01-051-3-06
__GGCCCCGGCCCCGGCCAACCGGX_XX_X
25._ICS_43
__GGCC______CCGG__AACCGGX_XX_X
26._GC-01-051-3-06
__GGCCCCGGCCCCGGCCAACCGGX_XX_X

Input profile: ICS_43 ICS_43_Fld#_164_Plt#_1

 
USDA-TARS, United States of America
Location: Field: 164, Tree: 1
 Mars, 2018

1._ICS_43 RUQ_144

identical
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._ICS_43 RUQ_144

64.7 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

3._ICS_43 ICS43

59.1 %
22 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

4._ICS_43 RUQ_144

48.5 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

5._ICS_43

48.5 %
34 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block3
 Dapeng Zhang, 2016

6._ICS_43 RUQ_144

47.2 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

7._ICS_43

32.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

8._ICS_43

32.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 2
 Dapeng Zhang, 2016

9._ICS_43

32.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 2
 Dapeng Zhang, 2016

10._ICS_43

32.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 4
 Dapeng Zhang, 2016

11._ICS_43

32.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 12
 Dapeng Zhang, 2016

12._ICS_43

32.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 14
 Dapeng Zhang, 2016

13._ICS_43

32.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 15
 Dapeng Zhang, 2016

14._ICS_43

32.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 8 > FP
 Dapeng Zhang, 2016

15._ICS_43

32.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 9 > FP
 Dapeng Zhang, 2016

16._ICS_43 GC-01-051-3-06

31.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

17._ICS_43 GC-01-051-3-06

31 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

18._ICS_43 GC-01-051-3-06

31 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

19._ICS_43 GC-01-051-3-06

31 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

20._ICS_43 GC-01-051-3-06

31 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

21._ICS_43 GC-01-051-3-06

31 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

22._ICS_43 GC-01-051-3-06

31 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

23._ICS_43 GC-01-051-3-06

31 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

24._ICS_43 GC-01-051-3-06

31 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

25._ICS_43

30.3 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 3
 Dapeng Zhang, 2016

26._ICS_43 GC-01-051-3-06

30.1 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998