SNP Profiles of EET 400 [ECU]   View Data

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 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ACACAGACAAGGGGCCAAAGAGAAAGAA
1._EET_400_[ECU]___
ACCCGGACAAGGGGCCAAGGAGAGAGAC
2._EET_400_[ECU]___
__________CCGG______________
3._EET_400_[ECU]___
ACACAGCCTTCCGGGGAACCGGTTTTGT
4._EET_400_[ECU]___
ACACAGCCTTCCGGGGAACCGGTTTTGT
5._EET_400_[ECU]___
ACACAGCCTTCCGGGGAACCGGTTTTGT
6._EET_400_[ECU]___
__________CCGG__AA__________
7._EET_400_[ECU]___
__________CC__GG____GG______
8._EET_400_[ECU]___
__________CCGG__AA__________
9._EET_400_[ECU]___
__________CCGG__AA__________
10._EET_400_[ECU]___
__________CCGG__AA__________
11._EET_400_[ECU]___
__________CCGG__AA__________
12._EET_400_[ECU]___
__________CCGG__AA__________
13._EET_400_[ECU]___
CCAAAACCTTCCGGGGAACCGGTTTTGG
14._EET_400_[ECU]___
CCAAAACCTTCCGGGGAACCGGTTTTGG
15._EET_400_[ECU]___
CCAAAACCTTCCGGGGAACCGGTTTTGG
16._EET_400_[ECU]___
CCAAAACCTTCCGGGGAACCGGTTTTGG
17._EET_400_[ECU]___
CCAAAACCTTCCGGGGAACCGGTTTTGG
18._EET_400_[ECU]___
__________CCGG__AA__________
19._EET_400_[ECU]___
__________CCGG__AA__________
20._EET_400_[ECU]___
__________CCGG__AA__________
21._EET_400_[ECU]___
__________CCGG__AA__________
22._EET_400_[ECU]___
__________CCGG__AA__________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AGACAAGGCCGGAGGGACAGCGAAACAA
1._EET_400_[ECU]___
AAACAGGGAAAGAGGGCCAGCGAAAAAA
2._EET_400_[ECU]___
__GTTT__AC______ACTTCCAGGTCT
3._EET_400_[ECU]___
TTGTTT__AAGGCTCCACTTCCAGGTCT
4._EET_400_[ECU]___
TTGTTT__AAGGCTCCACTTCCAGGTCT
5._EET_400_[ECU]___
TTGTTT__AAGGCTCCACTTCCAGGTCT
6._EET_400_[ECU]___
__GTTT__AC__CT__ACTTCCAGGTCT
7._EET_400_[ECU]___
__GT__CC______CCACTTCCAGGTCT
8._EET_400_[ECU]___
__GTTT__AA__CT__ACTTCCAGGTCT
9._EET_400_[ECU]___
__GTTT__AA__CT__ACTTCCAGGTCT
10._EET_400_[ECU]___
__GTTT__AA__CT__ACTTCCAGGTCT
11._EET_400_[ECU]___
__GTTT__AC__CT__ACTTCCAGGTCT
12._EET_400_[ECU]___
__TTTT__CC__TT__ACCCGGAGGGCT
13._EET_400_[ECU]___
TTTTTTTT__GGTTCCAATTGGAAGG__
14._EET_400_[ECU]___
TTTTTTTT__GGTTCCAATTGGAAGGCC
15._EET_400_[ECU]___
TTTTTTTT__GGTTCCAATTGGAAGGCT
16._EET_400_[ECU]___
TTTTTTTT__GGTTCCAATTGGAAGGCC
17._EET_400_[ECU]___
TTTTTTTT__GGTTCCAATTGGAAGGCC
18._EET_400_[ECU]___
__TTTT______TT__AATTGGAAGG__
19._EET_400_[ECU]___
__TTTT______TT__AATTGGAAGGCC
20._EET_400_[ECU]___
__TTTT______TT__AATTGGAAGGCT
21._EET_400_[ECU]___
__TTTT______TT__AATTGGAAGGCC
22._EET_400_[ECU]___
__TTTT______TT__AATTGGAAGGCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGATGGCCGGAGGGAGCGCCATAAGGGG
1._EET_400_[ECU]___
GGATGGCCGGAGGGAGCGCCATATAAGG
2._EET_400_[ECU]___
______CC__AG__CCGG____AT____
3._EET_400_[ECU]___
CCTTAGCCCCAGGGCTGGGGATATAGGG
4._EET_400_[ECU]___
CCTTAGCCCCAGGGCTGGGGATATAGGG
5._EET_400_[ECU]___
CCTTAGCCCCAGGGCTGGGGATATAGGG
6._EET_400_[ECU]___
CC____CCCCAG__CTGG____AT____
7._EET_400_[ECU]___
______CCCCAG__CT________AGGG
8._EET_400_[ECU]___
CC____CCCCAG__CTGG____AT____
9._EET_400_[ECU]___
CC____CCCCAG__CTGG____AT____
10._EET_400_[ECU]___
CC____CCCCAG__CTGG____AT____
11._EET_400_[ECU]___
CC____CCCCAG__CTGG____AT____
12._EET_400_[ECU]___
CC____ACCCAA__CCGG____AT____
13._EET_400_[ECU]___
CCTTGGAACCGGGGCCGGGGAATTGGGG
14._EET_400_[ECU]___
CCTTGGAACCGGGGCCGGGGAATTGGGG
15._EET_400_[ECU]___
CCTTGGAACCGGGGCCGGGGAATTGGGG
16._EET_400_[ECU]___
CCTTGGAACCGGGGCCGGGGAATTGGGG
17._EET_400_[ECU]___
CCTTGGAACCGGGGCCGGGGAATTGGGG
18._EET_400_[ECU]___
CC____AACCGG__CCGG____TT____
19._EET_400_[ECU]___
CC____AACCGG__CCGG____TT____
20._EET_400_[ECU]___
CC____AACCGG__CCGG____TT____
21._EET_400_[ECU]___
CC____AACCGG__CCGG____TT____
22._EET_400_[ECU]___
CC____AACCGG__CCGG____TT____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAGGAGAGAGATCCAAACACAGCCGGCG
1._EET_400_[ECU]___
AAGGAGAAAGATCGAAAAACAGCCGGCG
2._EET_400_[ECU]___
AA______GG________AC__GG__GG
3._EET_400_[ECU]___
AACCGGAGGGATCG__AAACGGGGGGGG
4._EET_400_[ECU]___
AACCGGAGGGATCG__AAACGGGGGGGG
5._EET_400_[ECU]___
AACCGGAGGGATCG__AAACGGGGGGGG
6._EET_400_[ECU]___
AA______GG________AC__GG__GG
7._EET_400_[ECU]___
AA__________CC____AC__GG__CG
8._EET_400_[ECU]___
AA______GG________AC__GG__GG
9._EET_400_[ECU]___
AA______GG________AC__GG__GG
10._EET_400_[ECU]___
AA______GG________AC__GG__GG
11._EET_400_[ECU]___
AA______GG________AC__GG__GG
12._EET_400_[ECU]___
AA______GG________AC__TT__GG
13._EET_400_[ECU]___
AATTGGGGGGAACC__AACCAATTGGGG
14._EET_400_[ECU]___
AATTGGGGGGAACC__AACCAATTGGGG
15._EET_400_[ECU]___
AATTGGGGGGAACC__AACCAATTGGGG
16._EET_400_[ECU]___
AATTGGGGGGAACC__AACCAATTGGGG
17._EET_400_[ECU]___
AATTGGGGGGAACC__AACCAATTGGGG
18._EET_400_[ECU]___
AA______GG________CC__TT__GG
19._EET_400_[ECU]___
AA______GG________CC__TT__GG
20._EET_400_[ECU]___
AA______GG________CC__TT__GG
21._EET_400_[ECU]___
AA______GG________CC__TT__GG
22._EET_400_[ECU]___
AA______GG________CC__TT__GG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
ACGGGGAGAAAGACAAAGAACCAACCGG
1._EET_400_[ECU]___
ACGGGGAAAAAACCAGAGAACCAACCGG
2._EET_400_[ECU]___
AC____CT____GG______________
3._EET_400_[ECU]___
ACCCCCCTAAAAGGAGCTTTGTTTACCG
4._EET_400_[ECU]___
ACCCCCCTAAAAGGAGCTTTGTTTACCG
5._EET_400_[ECU]___
ACCCCCCTAAAAGGAGCTTTGTTTACCG
6._EET_400_[ECU]___
AC____CT____GG______________
7._EET_400_[ECU]___
AC__CCCT____GGAGCT____TTAC__
8._EET_400_[ECU]___
AC____CT____GG______________
9._EET_400_[ECU]___
AC____CT____GG______________
10._EET_400_[ECU]___
AC____CT____GG______________
11._EET_400_[ECU]___
AC____CT____GG______________
12._EET_400_[ECU]___
CC____TT____GG______________
13._EET_400_[ECU]___
AACCCCCCAAAAGGGGTTTTGGTTCCGG
14._EET_400_[ECU]___
AACCCCCCAAAAGGGGTTTTGGTTCCGG
15._EET_400_[ECU]___
AACCCCCCAAAAGGGGTTTTGGTTCCGG
16._EET_400_[ECU]___
AACCCCCCAAAAGGGGTTTTGGTTCCGG
17._EET_400_[ECU]___
AACCCCCCAAAAGGGGTTTTGGTTCCGG
18._EET_400_[ECU]___
AA____CC____GG______________
19._EET_400_[ECU]___
AA____CC____GG______________
20._EET_400_[ECU]___
AA____CC____GG______________
21._EET_400_[ECU]___
AA____CC____GG______________
22._EET_400_[ECU]___
AA____CC____GG______________
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
AGGGAGGGGGACAGGGAGATAGAAX_XX_X
1._EET_400_[ECU]___
AGCCAGGGGGACGGCCGGATAAAAX_XX_X
2._EET_400_[ECU]___
__CGCT______CTCG__AATTAAX_XX_X
3._EET_400_[ECU]___
__CGCTCCGGCCCTCGCCAATTAAX_XX_X
4._EET_400_[ECU]___
__CGCTCCGGCCCTCGCCAATTAAX_XX_X
5._EET_400_[ECU]___
__CGCTCCGGCCCTCGCCAATTAAX_XX_X
6._EET_400_[ECU]___
__CGCT______CTCG__AATTAAX_XX_X
7._EET_400_[ECU]___
__CGTT____CC__________AAX_XX_X
8._EET_400_[ECU]___
__CGCT______CTCG__AATTAAX_XX_X
9._EET_400_[ECU]___
__CGCT______CTCG__AATTAAX_XX_X
10._EET_400_[ECU]___
__CGCT______CTCG__AATTAAX_XX_X
11._EET_400_[ECU]___
__CGCT______CTCG__AATTAGX_XX_X
12._EET_400_[ECU]___
__GGCC______TTCG__AACTAGX_XX_X
13._EET_400_[ECU]___
__CGTTCCGGCCTTGGCCAATTGGX_XX_X
14._EET_400_[ECU]___
__CGTTCCGGCCTTGGCCAATTGGX_XX_X
15._EET_400_[ECU]___
__CGTTCCGGCCTTGGCCAATTGGX_XX_X
16._EET_400_[ECU]___
__CGTTCCGGCCTTGGCCAATTGGX_XX_X
17._EET_400_[ECU]___
__CGTTCCGGCCTTGGCCAATTGGX_XX_X
18._EET_400_[ECU]___
__CGTT______TTGG__AATTGGX_XX_X
19._EET_400_[ECU]___
__CGTT______TTGG__AATTGGX_XX_X
20._EET_400_[ECU]___
__CGTT______TTGG__AATTGGX_XX_X
21._EET_400_[ECU]___
__CGTT______TTGG__AATTGGX_XX_X
22._EET_400_[ECU]___
__CGTT______TTGG__AATTGGX_XX_X

Input profile: EET_400_[ECU] EET_400_[ECU]_Fld#_153_Plt#_2

 
USDA-TARS, United States of America
Location: Field: 153, Tree: 2
 Mars, 2018

1._EET_400_[ECU] MITC-000396

82.3 %
82 shared markers

USDA-SHRS, United States of America
 Mars, 2018

2._EET_400_[ECU]

41.9 %
31 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

3._EET_400_[ECU] GC-01-066-4-02

41.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

4._EET_400_[ECU] GC-01-066-4-02

41.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

5._EET_400_[ECU] GC-01-066-4-02

41.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

6._EET_400_[ECU]

40 %
35 shared markers

Estation Experimental Tropical Pichilingue, Ecuador
Location: OCHO CASAS #1
 Dapeng Zhang, 2016

7._EET_400_[ECU] RUQ_760

40 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

8._EET_400_[ECU]

38.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 3
 Dapeng Zhang, 2016

9._EET_400_[ECU]

38.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 9
 Dapeng Zhang, 2016

10._EET_400_[ECU]

38.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 13 > F
 Dapeng Zhang, 2016

11._EET_400_[ECU] RUQ_760

38.6 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

12._EET_400_[ECU]

37.1 %
35 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot85/Trial II 2B
 Dapeng Zhang, 2016

13._EET_400_[ECU] GC-01-066-4-02

35.9 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

14._EET_400_[ECU] GC-01-066-4-02

35.4 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

15._EET_400_[ECU] GC-01-066-4-02

35.4 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

16._EET_400_[ECU] GC-01-066-4-02

35.4 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

17._EET_400_[ECU] GC-01-066-4-02

35.4 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

18._EET_400_[ECU]

30.3 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 10 > F
 Dapeng Zhang, 2016

19._EET_400_[ECU]

29.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 2
 Dapeng Zhang, 2016

20._EET_400_[ECU]

29.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 5
 Dapeng Zhang, 2016

21._EET_400_[ECU]

29.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 7
 Dapeng Zhang, 2016

22._EET_400_[ECU]

29.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 1 > FP
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998