SNP Profiles of EET 400 [ECU]   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
ACACAGACAAGGGGCCAAAGAGAAAGAA
1._MITC-000396
ACCCGGACAAGGGGCCAAGGAGAGAGAC
2._EET_400_[ECU]
__________CCGG______________
3._GC-01-066-4-02
ACACAGCCTTCCGGGGAACCGGTTTTGT
4._GC-01-066-4-02
ACACAGCCTTCCGGGGAACCGGTTTTGT
5._GC-01-066-4-02
ACACAGCCTTCCGGGGAACCGGTTTTGT
6._EET_400_[ECU]
__________CCGG__AA__________
7._RUQ_760
__________CC__GG____GG______
8._EET_400_[ECU]
__________CCGG__AA__________
9._EET_400_[ECU]
__________CCGG__AA__________
10._EET_400_[ECU]
__________CCGG__AA__________
11._RUQ_760
__________CCGG__AA__________
12._EET_400_[ECU]
__________CCGG__AA__________
13._GC-01-066-4-02
CCAAAACCTTCCGGGGAACCGGTTTTGG
14._GC-01-066-4-02
CCAAAACCTTCCGGGGAACCGGTTTTGG
15._GC-01-066-4-02
CCAAAACCTTCCGGGGAACCGGTTTTGG
16._GC-01-066-4-02
CCAAAACCTTCCGGGGAACCGGTTTTGG
17._GC-01-066-4-02
CCAAAACCTTCCGGGGAACCGGTTTTGG
18._EET_400_[ECU]
__________CCGG__AA__________
19._EET_400_[ECU]
__________CCGG__AA__________
20._EET_400_[ECU]
__________CCGG__AA__________
21._EET_400_[ECU]
__________CCGG__AA__________
22._EET_400_[ECU]
__________CCGG__AA__________
 1516171819202122232425262728
_Input profile
AGACAAGGCCGGAGGGACAGCGAAACAA
1._MITC-000396
AAACAGGGAAAGAGGGCCAGCGAAAAAA
2._EET_400_[ECU]
__GTTT__AC______ACTTCCAGGTCT
3._GC-01-066-4-02
TTGTTT__AAGGCTCCACTTCCAGGTCT
4._GC-01-066-4-02
TTGTTT__AAGGCTCCACTTCCAGGTCT
5._GC-01-066-4-02
TTGTTT__AAGGCTCCACTTCCAGGTCT
6._EET_400_[ECU]
__GTTT__AC__CT__ACTTCCAGGTCT
7._RUQ_760
__GT__CC______CCACTTCCAGGTCT
8._EET_400_[ECU]
__GTTT__AA__CT__ACTTCCAGGTCT
9._EET_400_[ECU]
__GTTT__AA__CT__ACTTCCAGGTCT
10._EET_400_[ECU]
__GTTT__AA__CT__ACTTCCAGGTCT
11._RUQ_760
__GTTT__AC__CT__ACTTCCAGGTCT
12._EET_400_[ECU]
__TTTT__CC__TT__ACCCGGAGGGCT
13._GC-01-066-4-02
TTTTTTTT__GGTTCCAATTGGAAGG__
14._GC-01-066-4-02
TTTTTTTT__GGTTCCAATTGGAAGGCC
15._GC-01-066-4-02
TTTTTTTT__GGTTCCAATTGGAAGGCT
16._GC-01-066-4-02
TTTTTTTT__GGTTCCAATTGGAAGGCC
17._GC-01-066-4-02
TTTTTTTT__GGTTCCAATTGGAAGGCC
18._EET_400_[ECU]
__TTTT______TT__AATTGGAAGG__
19._EET_400_[ECU]
__TTTT______TT__AATTGGAAGGCC
20._EET_400_[ECU]
__TTTT______TT__AATTGGAAGGCT
21._EET_400_[ECU]
__TTTT______TT__AATTGGAAGGCC
22._EET_400_[ECU]
__TTTT______TT__AATTGGAAGGCC
 2930313233343536373839404142
_Input profile
GGATGGCCGGAGGGAGCGCCATAAGGGG
1._MITC-000396
GGATGGCCGGAGGGAGCGCCATATAAGG
2._EET_400_[ECU]
______CC__AG__CCGG____AT____
3._GC-01-066-4-02
CCTTAGCCCCAGGGCTGGGGATATAGGG
4._GC-01-066-4-02
CCTTAGCCCCAGGGCTGGGGATATAGGG
5._GC-01-066-4-02
CCTTAGCCCCAGGGCTGGGGATATAGGG
6._EET_400_[ECU]
CC____CCCCAG__CTGG____AT____
7._RUQ_760
______CCCCAG__CT________AGGG
8._EET_400_[ECU]
CC____CCCCAG__CTGG____AT____
9._EET_400_[ECU]
CC____CCCCAG__CTGG____AT____
10._EET_400_[ECU]
CC____CCCCAG__CTGG____AT____
11._RUQ_760
CC____CCCCAG__CTGG____AT____
12._EET_400_[ECU]
CC____ACCCAA__CCGG____AT____
13._GC-01-066-4-02
CCTTGGAACCGGGGCCGGGGAATTGGGG
14._GC-01-066-4-02
CCTTGGAACCGGGGCCGGGGAATTGGGG
15._GC-01-066-4-02
CCTTGGAACCGGGGCCGGGGAATTGGGG
16._GC-01-066-4-02
CCTTGGAACCGGGGCCGGGGAATTGGGG
17._GC-01-066-4-02
CCTTGGAACCGGGGCCGGGGAATTGGGG
18._EET_400_[ECU]
CC____AACCGG__CCGG____TT____
19._EET_400_[ECU]
CC____AACCGG__CCGG____TT____
20._EET_400_[ECU]
CC____AACCGG__CCGG____TT____
21._EET_400_[ECU]
CC____AACCGG__CCGG____TT____
22._EET_400_[ECU]
CC____AACCGG__CCGG____TT____
 4344454647484950515253545556
_Input profile
AAGGAGAGAGATCCAAACACAGCCGGCG
1._MITC-000396
AAGGAGAAAGATCGAAAAACAGCCGGCG
2._EET_400_[ECU]
AA______GG________AC__GG__GG
3._GC-01-066-4-02
AACCGGAGGGATCG__AAACGGGGGGGG
4._GC-01-066-4-02
AACCGGAGGGATCG__AAACGGGGGGGG
5._GC-01-066-4-02
AACCGGAGGGATCG__AAACGGGGGGGG
6._EET_400_[ECU]
AA______GG________AC__GG__GG
7._RUQ_760
AA__________CC____AC__GG__CG
8._EET_400_[ECU]
AA______GG________AC__GG__GG
9._EET_400_[ECU]
AA______GG________AC__GG__GG
10._EET_400_[ECU]
AA______GG________AC__GG__GG
11._RUQ_760
AA______GG________AC__GG__GG
12._EET_400_[ECU]
AA______GG________AC__TT__GG
13._GC-01-066-4-02
AATTGGGGGGAACC__AACCAATTGGGG
14._GC-01-066-4-02
AATTGGGGGGAACC__AACCAATTGGGG
15._GC-01-066-4-02
AATTGGGGGGAACC__AACCAATTGGGG
16._GC-01-066-4-02
AATTGGGGGGAACC__AACCAATTGGGG
17._GC-01-066-4-02
AATTGGGGGGAACC__AACCAATTGGGG
18._EET_400_[ECU]
AA______GG________CC__TT__GG
19._EET_400_[ECU]
AA______GG________CC__TT__GG
20._EET_400_[ECU]
AA______GG________CC__TT__GG
21._EET_400_[ECU]
AA______GG________CC__TT__GG
22._EET_400_[ECU]
AA______GG________CC__TT__GG
 5758596061626364656667686970
_Input profile
ACGGGGAGAAAGACAAAGAACCAACCGG
1._MITC-000396
ACGGGGAAAAAACCAGAGAACCAACCGG
2._EET_400_[ECU]
AC____CT____GG______________
3._GC-01-066-4-02
ACCCCCCTAAAAGGAGCTTTGTTTACCG
4._GC-01-066-4-02
ACCCCCCTAAAAGGAGCTTTGTTTACCG
5._GC-01-066-4-02
ACCCCCCTAAAAGGAGCTTTGTTTACCG
6._EET_400_[ECU]
AC____CT____GG______________
7._RUQ_760
AC__CCCT____GGAGCT____TTAC__
8._EET_400_[ECU]
AC____CT____GG______________
9._EET_400_[ECU]
AC____CT____GG______________
10._EET_400_[ECU]
AC____CT____GG______________
11._RUQ_760
AC____CT____GG______________
12._EET_400_[ECU]
CC____TT____GG______________
13._GC-01-066-4-02
AACCCCCCAAAAGGGGTTTTGGTTCCGG
14._GC-01-066-4-02
AACCCCCCAAAAGGGGTTTTGGTTCCGG
15._GC-01-066-4-02
AACCCCCCAAAAGGGGTTTTGGTTCCGG
16._GC-01-066-4-02
AACCCCCCAAAAGGGGTTTTGGTTCCGG
17._GC-01-066-4-02
AACCCCCCAAAAGGGGTTTTGGTTCCGG
18._EET_400_[ECU]
AA____CC____GG______________
19._EET_400_[ECU]
AA____CC____GG______________
20._EET_400_[ECU]
AA____CC____GG______________
21._EET_400_[ECU]
AA____CC____GG______________
22._EET_400_[ECU]
AA____CC____GG______________
 717273747576777879808182  
_Input profile
AGGGAGGGGGACAGGGAGATAGAAX_XX_X
1._MITC-000396
AGCCAGGGGGACGGCCGGATAAAAX_XX_X
2._EET_400_[ECU]
__CGCT______CTCG__AATTAAX_XX_X
3._GC-01-066-4-02
__CGCTCCGGCCCTCGCCAATTAAX_XX_X
4._GC-01-066-4-02
__CGCTCCGGCCCTCGCCAATTAAX_XX_X
5._GC-01-066-4-02
__CGCTCCGGCCCTCGCCAATTAAX_XX_X
6._EET_400_[ECU]
__CGCT______CTCG__AATTAAX_XX_X
7._RUQ_760
__CGTT____CC__________AAX_XX_X
8._EET_400_[ECU]
__CGCT______CTCG__AATTAAX_XX_X
9._EET_400_[ECU]
__CGCT______CTCG__AATTAAX_XX_X
10._EET_400_[ECU]
__CGCT______CTCG__AATTAAX_XX_X
11._RUQ_760
__CGCT______CTCG__AATTAGX_XX_X
12._EET_400_[ECU]
__GGCC______TTCG__AACTAGX_XX_X
13._GC-01-066-4-02
__CGTTCCGGCCTTGGCCAATTGGX_XX_X
14._GC-01-066-4-02
__CGTTCCGGCCTTGGCCAATTGGX_XX_X
15._GC-01-066-4-02
__CGTTCCGGCCTTGGCCAATTGGX_XX_X
16._GC-01-066-4-02
__CGTTCCGGCCTTGGCCAATTGGX_XX_X
17._GC-01-066-4-02
__CGTTCCGGCCTTGGCCAATTGGX_XX_X
18._EET_400_[ECU]
__CGTT______TTGG__AATTGGX_XX_X
19._EET_400_[ECU]
__CGTT______TTGG__AATTGGX_XX_X
20._EET_400_[ECU]
__CGTT______TTGG__AATTGGX_XX_X
21._EET_400_[ECU]
__CGTT______TTGG__AATTGGX_XX_X
22._EET_400_[ECU]
__CGTT______TTGG__AATTGGX_XX_X

Input profile: EET_400_[ECU] EET_400_[ECU]_Fld#_153_Plt#_2

 
USDA-TARS, United States of America
Location: Field: 153, Tree: 2
 Mars, 2018

1._EET_400_[ECU] MITC-000396

82.3 %
82 shared markers

USDA-SHRS, United States of America
 Mars, 2018

2._EET_400_[ECU]

41.9 %
31 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

3._EET_400_[ECU] GC-01-066-4-02

41.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

4._EET_400_[ECU] GC-01-066-4-02

41.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

5._EET_400_[ECU] GC-01-066-4-02

41.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

6._EET_400_[ECU]

40 %
35 shared markers

Estation Experimental Tropical Pichilingue, Ecuador
Location: OCHO CASAS #1
 Dapeng Zhang, 2016

7._EET_400_[ECU] RUQ_760

40 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

8._EET_400_[ECU]

38.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 3
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

9._EET_400_[ECU]

38.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 9
 Dapeng Zhang, 2016

10._EET_400_[ECU]

38.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 13 > F
 Dapeng Zhang, 2016

11._EET_400_[ECU] RUQ_760

38.6 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

12._EET_400_[ECU]

37.1 %
35 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot85/Trial II 2B
 Dapeng Zhang, 2016

13._EET_400_[ECU] GC-01-066-4-02

35.9 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

14._EET_400_[ECU] GC-01-066-4-02

35.4 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

15._EET_400_[ECU] GC-01-066-4-02

35.4 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

16._EET_400_[ECU] GC-01-066-4-02

35.4 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

17._EET_400_[ECU] GC-01-066-4-02

35.4 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

18._EET_400_[ECU]

30.3 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 10 > F
 Dapeng Zhang, 2016

19._EET_400_[ECU]

29.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

20._EET_400_[ECU]

29.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 5
 Dapeng Zhang, 2016

21._EET_400_[ECU]

29.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 7
 Dapeng Zhang, 2016

22._EET_400_[ECU]

29.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 1 > FP
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998