SNP Profiles of ICS 1   View Data

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 1234567891011121314
_Input profile
CCACGGAAAGAAAAACAAGGAAAAAACC
1._RUQ_847
CCACGGAAAGAAAAACAAGGAAAAAACC
2._MITC-000297
CCACGGAAAGAAAAACAAGGAAAAAACC
3._RUQ_847
____________AA______________
4._RUQ_847B
____________AA______________
5._RUQ_847
__________TT________AA______
6._ICS_1
__________TTAA__AA__________
7._ICS_1
__________TTAA__AA__________
8._ICS_1
__________TTAA__AA__________
9._ICS_1
__________TTAA__AA__________
10._ICS_1
__________TTAA__AA__________
11._NA
CCACGGAACTTTAAGTAACCAATTTTGG
12._NA
CCACGGAACTTTAAGTAACCAATTTTGG
13._NA
CCACGGAACTTTAAGTAACCAATTTTGG
14._NA
CCACGGAACTTTAAGTAACCAATTTTGG
15._NA
CCACGGAACTTTAAGTAACCAATTTTGG
16._NA
CCACGGAACTTTAAGTAACCAATTTTGG
17._ICS_1
__________TTAA__AA__________
18._ICS_1
__________TTAA__AA__________
19._RUQ_847
__________TTAA__AA__________
20._RUQ_847
__________TTAA__AA__________
21._RUQ_847
__________TT__GT____AA______
22._ICS1
__________CC________GG______
23._ICS_1
__________CCGG__AA__________
 1516171819202122232425262728
_Input profile
GGAAGGAGAAGGAAAAAAAGCCAAACGG
1._RUQ_847
GGAAGGAGAAGGAAAAAAAGCCAAACGG
2._MITC-000297
GGAAGGAGAAGGAAAAAAAGCCAAACGG
3._RUQ_847
__TT____________AA__GG______
4._RUQ_847B
__TT____________AA__GG______
5._RUQ_847
______________TTAA__CC____CC
6._ICS_1
__TTCC__AA__TT__AACTGGAAGTCC
7._ICS_1
__TTCC__AA__TT__AACTGGAAGTCC
8._ICS_1
__TTCC__AA__TT__AACTGGAAGTCC
9._ICS_1
__TTCC__AA__TT__AACTGGAAGTCC
10._ICS_1
__TTCC__AA__TT__AACTGGAAGTCC
11._NA
CCTTCCTTAAGGTTTTAACTGGAAGTCC
12._NA
CCTTCCTTAAGGTTTTAACTGGAAGTCC
13._NA
CCTTCCTTAAGGTTTTAACTGGAAGTCC
14._NA
CCTTCCTTAAGGTTTTAACTGGAAGTCC
15._NA
CCTTCCTTAAGGTTTTAACTGGAAGTCC
16._NA
CCTTCCTTAAGGTTTTAACTGGAAGTCC
17._ICS_1
__TTCC__AA__TT__AACTGGAAGTCC
18._ICS_1
__TTCC__AA__TT__AACTGGAAGTCC
19._RUQ_847
__TTCC__AA__TT__AACTGGAGGTCC
20._RUQ_847
__TTCC__AA__TT__AACTGGAGGTCC
21._RUQ_847
__TT__CT______TTAACTGGAAGTCC
22._ICS1
______________CTCC__CG____CT
23._ICS_1
__TTTT__AC__TT__ACCTGGGGGTCC
 2930313233343536373839404142
_Input profile
AATTAGAACGAGGGAGGGCCATATAGAA
1._RUQ_847
AATTAGAACGAGGGAGGGCCATATAGAA
2._MITC-000297
AATTAGAACGAGGGAGGGCCATATAGAA
3._RUQ_847
__________AG____________AG__
4._RUQ_847B
__________AG____________AG__
5._RUQ_847
____AGAACGAG______________AA
6._ICS_1
TT____AACGAG__CTGG____AT____
7._ICS_1
TT____AACGAG__CTGG____AT____
8._ICS_1
TT____AACGAG__CTGG____AT____
9._ICS_1
TT____AACGAG__CTGG____AT____
10._ICS_1
TT____AACGAG__CTGG____AT____
11._NA
TTAAAGAACGAGGGCTGGGGATATAGAA
12._NA
TTAAAGAACGAGGGCTGGGGATATAGAA
13._NA
TTAAAGAACGAGGGCTGGGGATATAGAA
14._NA
TTAAAGAACGAGGGCTGGGGATATAGAA
15._NA
TTAAAGAACGAGGGCTGGGGATATAGAA
16._NA
TTAAAGAACGAGGGCTGGGGATATAGAA
17._ICS_1
TT____AACGAG__CTGG____AT____
18._ICS_1
TT____AACGAG__CTGG____AT____
19._RUQ_847
TT____AACGAG__CTGG____AT____
20._RUQ_847
TT____AACGAG__CTGG____AT____
21._RUQ_847
____AGAACGAG__CT________AGAA
22._ICS1
____AGACCGAG______________AG
23._ICS_1
CT____AACCAA__CCGG____AT____
 4344454647484950515253545556
_Input profile
ATAGAGGGGGAACGAACCCCGGAAAACC
1._RUQ_847
ATAGAGGGGGAACGAACCCCGGAAAACC
2._MITC-000297
ATAGAGGGGGAACGAACCCCGGAAAACC
3._RUQ_847
__________________AC______CC
4._RUQ_847B
__________________AC______CC
5._RUQ_847
ATCT________CG____________CC
6._ICS_1
AT______GG________CC__TT__CC
7._ICS_1
AT______GG________CC__TT__CC
8._ICS_1
AT______GG________CC__TT__CC
9._ICS_1
AT______GG________CC__TT__CC
10._ICS_1
AT______GG________CC__TT__CC
11._NA
ATCTAGGGGGAACG__CCCCGGTTAACC
12._NA
ATCTAGGGGGAACG__CCCCGGTTAACC
13._NA
ATCTAGGGGGAACG__CCCCGGTTAACC
14._NA
ATCTAGGGGGAACG__CCCCGGTTAACC
15._NA
ATCTAGGGGGAACG__CCCCGGTTAACC
16._NA
ATCTAGGGGGAACG__CCCCGGTTAA__
17._ICS_1
AT______GG________CC__TT____
18._ICS_1
AT______GG________CC__TT__CC
19._RUQ_847
AT______GG________CC__TT__CC
20._RUQ_847
AT______GG________CC__TT__CC
21._RUQ_847
AT__________CG____CC__TT__CC
22._ICS1
TTCT________GG____________CC
23._ICS_1
AA______GG________AA__GG__CG
 5758596061626364656667686970
_Input profile
ACAGAGAAAGAGACGGAGACACACACCC
1._RUQ_847
ACAGAGAAAGAGACGGAGACACACACCC
2._MITC-000297
ACAGAGAAAGAGACGGAGACACACACCC
3._RUQ_847
AC__CT______GTGG________ACTT
4._RUQ_847B
AC__CT______GTGG________ACTT
5._RUQ_847
AC__CT____________GT________
6._ICS_1
AC____TT____GT______________
7._ICS_1
AC____TT____GT______________
8._ICS_1
AC____TT____GT______________
9._ICS_1
AC____TT____GT______________
10._ICS_1
AC____TT____GT______________
11._NA
ACCTCTTTAGAGGTGGCTGTGTGTACGG
12._NA
ACCTCTTTAGAGGTGGCTGTGTGTACGG
13._NA
ACCTCTTTAGAGGTGGCTGTGTGTACGG
14._NA
ACCTCTTTAGAGGTGGCTGTGTGTACGG
15._NA
ACCTCTTTAGAGGTGGCTGTGTGTACGG
16._NA
ACCTCTTTAGAGGTGGCTGTGTGTACGG
17._ICS_1
AC____TT____GT______________
18._ICS_1
AC____TT____GT______________
19._RUQ_847
AC____TT____GT______________
20._RUQ_847
AC____CT____GT______________
21._RUQ_847
AA__CTTT____GTGGCT____GTAC__
22._ICS1
CC__CC____________GT________
23._ICS_1
CC____TT____GG______________
 717273747576777879808182  
_Input profile
AGCGGGGGAAAAAAGGAAAAAAAGX_XX_X
1._RUQ_847
AGCGGGGGAAAAAAGGAAAAAAAGX_XX_X
2._MITC-000297
AGCGGGGGAAAAAAGGAAAAAAAGX_XX_X
3._RUQ_847
__CG____AA____________AGX_XX_X
4._RUQ_847B
__CG____AA____________AGX_XX_X
5._RUQ_847
AGCGCC______________TT__X_XX_X
6._ICS_1
__CGCC______TTGG__AATTAGX_XX_X
7._ICS_1
__CGCC______TTGG__AATTAGX_XX_X
8._ICS_1
__CGCC______TTGG__AATTAGX_XX_X
9._ICS_1
__CGCC______TTGG__AATTAGX_XX_X
10._ICS_1
__CGCC______TTGG__AATTAGX_XX_X
11._NA
AACGCCCCAAAATTGGTTAATTAGX_XX_X
12._NA
AACGCCCCAAAATTGGTTAATTAGX_XX_X
13._NA
AACGCCCCAAAATTGGTTAATTAGX_XX_X
14._NA
AACGCCCCAAAATTGGTTAATTAGX_XX_X
15._NA
AACGCCCCAAAATTGGTTAATTAGX_XX_X
16._NA
AACGCCCCAAAATTGGTTAATTAGX_XX_X
17._ICS_1
__CGCC______TTGG__AATTAGX_XX_X
18._ICS_1
____CC______TTGG__AATTAGX_XX_X
19._RUQ_847
__CGCC______TTGG__AATTAGX_XX_X
20._RUQ_847
__CGCC______TTGG__AATTAGX_XX_X
21._RUQ_847
__CGCC____AA__________AGX_XX_X
22._ICS1
AGCGCT______________CT__X_XX_X
23._ICS_1
__GGCC______TTCG__AATTAGX_XX_X

Input profile: ICS_1 ICS_1_Fld#_73_Plt#_2

 
USDA-TARS, United States of America
Location: Field: 73, Tree: 2
 Mars, 2018

1._ICS_1 RUQ_847

identical
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._ICS_1 MITC-000297

identical
82 shared markers

USDA-SHRS, United States of America
 Mars, 2018

3._ICS_1 RUQ_847

67.6 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

4._ICS_1 RUQ_847B

67.6 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

5._ICS_1 RUQ_847

63.6 %
22 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

6._ICS_1

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 3
 Dapeng Zhang, 2016

7._ICS_1

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

8._ICS_1

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 5
 Dapeng Zhang, 2016

9._ICS_1

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 6
 Dapeng Zhang, 2016

10._ICS_1

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 8
 Dapeng Zhang, 2016

11._ICS_1 NA

53.7 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

12._ICS_1 NA

53.7 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

13._ICS_1 NA

53.7 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

14._ICS_1 NA

53.7 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

15._ICS_1 NA

53.7 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

16._ICS_1 NA

53.1 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

17._ICS_1

52.9 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 7
 Dapeng Zhang, 2016

18._ICS_1

52.9 %
34 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block4
 Dapeng Zhang, 2016

19._ICS_1 RUQ_847

52.9 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

20._ICS_1 RUQ_847

52.9 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

21._ICS_1 RUQ_847

51.4 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

22._ICS_1 ICS1

40.9 %
22 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

23._ICS_1

32.9 %
35 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998