SNP Profiles of UF 667   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ACACAGAAAGAGAAACAAGGAGAAAAAC
1._CC_10___
ACACAGAAAGAGAAACAAGGAGAAAAAC
2._CC_10___
AACCAGAAAGAGAGACAAGGAGAGAACC
3._CC_10___
__________CTAA__AA__________
4._CC_10___
ACACAGAATTCTAAGTAACCAGTTTTGG
5._CC_10___
ACACAGAA__CTAAGTAACCAGTTTTGG
6._CC_10___
ACACAGAATTCTAAGTAACCAGTTTTGG
7._CC_10___
ACACAGAATTCTAAGTAACCAGTTTTGG
8._CC_10___
ACACAGAATTCTAAGTAACCAGTTTTGG
9._CC_10___
__________CTAA__AA__________
10._CC_10___
__________CTAA__AA__________
11._CC_10___
__________CTAA__AA__________
12._CC_10___
__________CTAA__AA__________
13._CC_10___
__________CTAA__AA__________
14._CC_10___
__________CTAA__AA__________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AGAAGGAGAAGGAAAGACAGCGAGACAG
1._CC_10___
AGAAGGAGAAGGAAAGACAGCGAGACAG
2._CC_10___
GGAAAGGGAAGGAGAACCGGCCAGACAA
3._CC_10___
__GTCC__AA__TT__CCCTCGAGGTCT
4._CC_10___
CTGTCCTTAAGGTTCTCCCTCGAGGTCT
5._CC_10___
CTGTCCTTAAGGTTCTCCCTCGAGGTCT
6._CC_10___
CTGTCCTTAAGGTTCTCCCTCGAGGTCT
7._CC_10___
CTGTCCTTAAGGTTCTCCCTCGAGGTCT
8._CC_10___
CTGTCCTTAAGGTTCTCCCTCGAGGTCT
9._CC_10___
__GTCC__AA__TT__CCCTCGAGGTCT
10._CC_10___
__GTCC__AA__TT__CCCTCGAGGTCT
11._CC_10___
__GTCC__AA__TT__CCCTCGAGGTCT
12._CC_10___
__GTCC__AA__TT__CCCTCGAGGTCT
13._CC_10___
__GT____AA__TT__CCCTGG__GT__
14._CC_10___
__GTCC__AA__TT__CCCTGGAGGTCT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AGATAGACCGAGGGAGGGCCATATAGAG
1._CC_10___
AGATAGACCGAGGGAGGGCCATATAGAG
2._CC_10___
AGTTAGAAGGAAGGAGCGCCTTATAGGG
3._CC_10___
CT____ACCGAG____GG____TT____
4._CC_10___
CTATGGACCGAGGG__GGGGATTTAGAG
5._CC_10___
CTATGGACCGAGGGCTGGGGATTTAGAG
6._CC_10___
CTATGGACCGAGGGCTGGGGATTTAGAG
7._CC_10___
CTATGGACCGAGGGCTGGGGATTTAGAG
8._CC_10___
CTATGGACCGAGGGCTGGGGATTTAGAG
9._CC_10___
CT____ACCGAG__CTGG____TT____
10._CC_10___
CT____ACCGAG__CTGG____TT____
11._CC_10___
CT____ACCGAG__CTGG____TT____
12._CC_10___
CT____ACCGAG__CTGG____TT____
13._CC_10___
______AC__AG__CTGG____TT____
14._CC_10___
CT____ACCGAG__CTGG____TT____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
ATAGAGAGGGATCGAGCCCCGGACAACC
1._CC_10___
ATAGAGAGGGATCGAGCCCCGGACAACC
2._CC_10___
ATAAGGGGGGATGGAGCCACAGACAACC
3._CC_10___
AT______GG________CC__TT__CC
4._CC_10___
ATCTAGAGGGATCG__CCCCGGTTAACC
5._CC_10___
ATCTAGAGGGATCG__CCCCGGTTAACC
6._CC_10___
ATCTAGAGGGATCG__CCCCGGTTAACC
7._CC_10___
ATCTAGAGGGATCG__CCCCGGTTAACC
8._CC_10___
ATCTAGAGGGATCG__CCCCGGTTAACC
9._CC_10___
AT______GG________CC__TT__CC
10._CC_10___
AT______GG________CC__TT__CC
11._CC_10___
AT______GG________CC__TT__CC
12._CC_10___
AT______GG________CC__TT__CC
13._CC_10___
________GG________CC__TT__CC
14._CC_10___
TT______GG________CC__TT__CC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
ACAGGGAGAGAGACAGAGACACACACCC
1._CC_10___
ACAGGGAGAGAGACAGAGACACACACCC
2._CC_10___
ACGGAGAAAGAACCAAAGAAAAACAACC
3._CC_10___
AC____CT____GT______________
4._CC_10___
ACCCCCCTAGAGGTGGCTGTGTGTACGG
5._CC_10___
ACCCCCCTAGAGGTGGCTGTGTGTACGG
6._CC_10___
ACCCCCCTAGAGGTGGCTGTGTGTACGG
7._CC_10___
ACCCCCCTAGAGGTGGCTGTGTGTACGG
8._CC_10___
ACCCCCCTAGAGGTGGCTGTGTGTACGG
9._CC_10___
AC____CT____GT______________
10._CC_10___
AC____CT____GT______________
11._CC_10___
AC____CT____GT______________
12._CC_10___
AC____CT____GT______________
13._CC_10___
______CT____GT______________
14._CC_10___
AC____CT____GT______________
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
AGCGGGGGAGACAAGGAGAAAGAGX_XX_X
1._CC_10___
AGCGGGGGAGACAAGGAGAAAGAGX_XX_X
2._CC_10___
AGCCGGCGAGCCAGGGAGAAAGGGX_XX_X
3._CC_10___
__GGCC______TTGG__AACTAGX_XX_X
4._CC_10___
AAGGCCCCAGACTTGGCTAACTAGX_XX_X
5._CC_10___
AAGGCCCCAGACTTGGCTAACTAGX_XX_X
6._CC_10___
AAGGCCCCAGACTTGGCTAACTAGX_XX_X
7._CC_10___
AAGGCCCCAGACTTGGCTAACTAGX_XX_X
8._CC_10___
AAGGCCCCAGACTTGGCTAACTAGX_XX_X
9._CC_10___
__GGCC______TTGG__AACTAGX_XX_X
10._CC_10___
__GGCC______TTGG__AACTAGX_XX_X
11._CC_10___
__GGCC______TTGG__AACTAGX_XX_X
12._CC_10___
__GGCC______TTGG__AACTAGX_XX_X
13._CC_10___
__GGCC______TTGG__AACTAGX_XX_X
14._CC_10___
__GGCC______TTGG__AACTAGX_XX_X

Input profile: CC_10 CC_10_Fld#_47A_Plt#_4

 
USDA-TARS, United States of America
Location: Field: 47A, Tree: 4
 Mars, 2018

1._CC_10 CC_10_Fld#_47_Plt#_5

identical
82 shared markers

USDA-TARS, United States of America
Location: Field: 47, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

2._CC_10 CC_10_Fld#_47B_Plt#_2

75 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 47B, Tree: 2
 Mars, 2018

3._CC_10

54.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8843 2
 Dapeng Zhang, 2016

4._CC_10 GC-08-271-8-43

53.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._CC_10 GC-08-271-8-43

53.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: Dead
 Mars, 2018

6._CC_10 GC-08-271-8-43

53.1 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

7._CC_10 GC-08-271-8-43

53.1 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._CC_10 GC-08-271-8-43

53.1 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: Dead
 Mars, 2018

9._CC_10

52.9 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8843 9
 Dapeng Zhang, 2016

10._CC_10

52.9 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8843 7
 Dapeng Zhang, 2016

11._CC_10

52.9 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8843 5
 Dapeng Zhang, 2016

12._CC_10

52.9 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8843 1
 Dapeng Zhang, 2016

13._CC_10

50 %
28 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

14._CC_10

50 %
35 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Trial 1/Rep 1 45
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998