SNP Profiles of EET 390 [ECU]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ACCCGGACAGGGAGCCAAAGAGAGAGAA
1._GC-01-035-2-12
ACCCGGACCTCCAGGGAACTAGCTCTTT
2._GC-01-035-2-12
ACCCGGACCTCCAGGGAACTAGCTCTTT
3._GC-01-035-2-12
ACCCGGACCTCCAGGGAACTAGCTCTTT
4._GC-01-035-2-12
ACCCGGACCTCCAGGGAACTAGCTCTTT
5._GC-01-035-2-12
ACCCGGACCTCCAGGGAACTAGCTCTTT
6._EET_390_[ECU]
__________CCAG__AA__________
7._EET_390_[ECU]
__________CCAG__AA__________
8._EET_390_[ECU]
__________CCAG__AA__________
9._EET_390_[ECU]
__________CCAG__AA__________
10._EET_390_[ECU]
__________CCAG__AA__________
11._EET_390_[ECU]
__________CCAG__AA__________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AGCCAGGGACAGAGGGCCGGCGAAACAG
1._GC-01-035-2-12
CTGGCT__ACAGCTCCCCCCCGAAGTCT
2._GC-01-035-2-12
CTGGCT__ACAGCTCCCCCCCGAAGTCT
3._GC-01-035-2-12
CTGGCT__ACAGCTCCCCCCCGAAGTCT
4._GC-01-035-2-12
CTGGCT__ACAGCTCCCCCCCGAAGTCT
5._GC-01-035-2-12
CTGGCT__ACAGCTCCCCCCCGAAGTCT
6._EET_390_[ECU]
__GGCT__AC__CT__CCCCCGAAGTCT
7._EET_390_[ECU]
__GGCT__AC__CT__CCCCCGAAGTCT
8._EET_390_[ECU]
__GGCT__AC__CT__CCCCCGAAGTCT
9._EET_390_[ECU]
__GGCT__AC__CT__CCCCCGAAGTCT
10._EET_390_[ECU]
__GGCT__AC__CT__CCCCCGAAGTCT
11._EET_390_[ECU]
__GGCT__CC__CT__CCCTCG__GT__
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGATGGCCGGAGAGGGCGACATAAAGGG
1._GC-01-035-2-12
CCATGGCCCCAGAGCCCGGTATAAAGGG
2._GC-01-035-2-12
CCATGGCCCCAGAGCCCGGTATAAAGGG
3._GC-01-035-2-12
CCATGGCCCCAGAGCCCGGTATAAAGGG
4._GC-01-035-2-12
CCATGGCCCCAGAGCCCGGTATAAAGGG
5._GC-01-035-2-12
CCATGGCCCCAGAGCCCGGTATAAAGGG
6._EET_390_[ECU]
CC____CCCCAG__CCCG____AA____
7._EET_390_[ECU]
CC____CCCCAG__CCCG____AA____
8._EET_390_[ECU]
CC____CCCCAG__CCCG____AA____
9._EET_390_[ECU]
CC____CCCCAG__CCCG____AA____
10._EET_390_[ECU]
CC____CCCCAG__CCCG____AA____
11._EET_390_[ECU]
CC____CC__AG__CCCG____AA____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAGGAAAGAAAACGAGACAAAACCGGCG
1._GC-01-035-2-12
AACCAAAGAAAACG__ACAAAAGGGGCG
2._GC-01-035-2-12
AACCAAAGAAAACG__ACAAAAGGGGCG
3._GC-01-035-2-12
AACCAAAGAAAACG__ACAAAAGGGGCG
4._GC-01-035-2-12
AACCAAAGAAAACG__ACAAAAGGGGCG
5._GC-01-035-2-12
AACCAAAGAAAACG__ACAAAAGGGGCG
6._EET_390_[ECU]
AA______AA________AA__GG__CG
7._EET_390_[ECU]
AA______AA________AA__GG__CG
8._EET_390_[ECU]
AA______AA________AA__GG__CG
9._EET_390_[ECU]
AA______AA________AA__GG__CG
10._EET_390_[ECU]
AA______AA________AA__GG__CG
11._EET_390_[ECU]
__________________AA__GG__CG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCGGAGAAAAAGACAAAAAAACACCCGG
1._GC-01-035-2-12
CCCCCTTTAGAAGTAATTTTGTGTCCCC
2._GC-01-035-2-12
CCCCCTTTAGAAGTAATTTTGTGTCCCC
3._GC-01-035-2-12
CCCCCTTTAGAAGTAATTTTGTGTCCCC
4._GC-01-035-2-12
CCCCCTTTAGAAGTAATTTTGTGTCCCC
5._GC-01-035-2-12
CCCCCTTTAGAAGTAATTTTGTGTCCCC
6._EET_390_[ECU]
CC____TT____GT______________
7._EET_390_[ECU]
CC____TT____GT______________
8._EET_390_[ECU]
CC____TT____GT______________
9._EET_390_[ECU]
CC____TT____GT______________
10._EET_390_[ECU]
CC____TT____GT______________
11._EET_390_[ECU]
______TT____GT______________
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
AACGAGGGAGACAGCGAGTTAGAAX_XX_X
1._GC-01-035-2-12
AACGCTCCAGACCTCGCTTTCTAAX_XX_X
2._GC-01-035-2-12
AACGCTCCAGACCTCGCTTTCTAAX_XX_X
3._GC-01-035-2-12
AACGCTCCAGACCTCGCTTTCTAAX_XX_X
4._GC-01-035-2-12
AACGCTCCAGACCTCGCTTTCTAAX_XX_X
5._GC-01-035-2-12
AACGCTCCAGACCTCGCTTTCTAAX_XX_X
6._EET_390_[ECU]
__CGCT______CTCG__TTCTAAX_XX_X
7._EET_390_[ECU]
__CGCT______CTCG__TTCTAAX_XX_X
8._EET_390_[ECU]
__CGCT______CTCG__TTCTAAX_XX_X
9._EET_390_[ECU]
__CGCT______CTCG__TTCTAAX_XX_X
10._EET_390_[ECU]
__CGCT______CTCG__TTCTAAX_XX_X
11._EET_390_[ECU]
__CGCT______CTCG__TTCTAAX_XX_X

Input profile: EET_390_[ECU] EET_390_[ECU]_Fld#_82_Plt#_6

 
USDA-TARS, United States of America
Location: Field: 82, Tree: 6
Notes: TARS_Cacao_collection
 Mars, 2018

1._EET_390_[ECU] GC-01-035-2-12

55 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._EET_390_[ECU] GC-01-035-2-12

55 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._EET_390_[ECU] GC-01-035-2-12

55 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

4._EET_390_[ECU] GC-01-035-2-12

55 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

5._EET_390_[ECU] GC-01-035-2-12

55 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

6._EET_390_[ECU]

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1210a 6 > FP
 Dapeng Zhang, 2016

7._EET_390_[ECU]

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1210a 4 > FP
 Dapeng Zhang, 2016

8._EET_390_[ECU]

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1210a 1 > FP
 Dapeng Zhang, 2016

9._EET_390_[ECU]

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1210a 8
 Dapeng Zhang, 2016

10._EET_390_[ECU]

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1210a 3
 Dapeng Zhang, 2016

11._EET_390_[ECU]

50 %
29 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: La Montaña Lot 6 Row 37 46-48
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998