SNP Profiles of PA 72 [PER]   View Data

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 1234567891011121314
_Input profile
AAACAACCAAGGGGCCAAGGGGAAAGAA
1._PA_72_[PER]
_____CCGG_AA_____
2._GC-08-051-1-62
AAACAACCTTCCGGGGAACCGGTTCTTT
3._GC-08-051-1-62
AAACAACCTTCCGGGGAACCGGTTCTTT
4._GC-08-051-1-62
AAACAACCTTCCGGGGAACCGGTTCTTT
5._GC-08-051-1-62
AAACAACCTTCCGGGGAACCGGTTCTTT
6._GC-08-051-1-62
AAACAACCTTCCGGGGAACCGGTTCTTT
7._GC-08-051-1-62
AAACAACCTTCCGGGGAACCGGTTCTTT
8._GC-08-051-1-62
AAACAACCTTCCGGGGAACCGGTTCTTT
9._GC-08-051-1-62
AAACAACCTTCCGGGGAACCGGTTCTTT
10._GC-08-051-1-62
AAACAACCTTCCGGGGAACCGGTTCTTT
11._GC-08-051-1-62
AAACAACCTTCCGGGGAACCGGTTCTTT
12._PA_72_[PER]
_____CCGG_AA_____
13._PA_72_[PER]
_____CCGG_AA_____
14._PA_72_[PER]
_____CCGG_AA_____
15._PA_72_[PER]
_____CCGG_AA_____
16._PA_72_[PER]
_____CCGG_AA_____
17._PA_72_[PER]
_____CCGG_AA_____
18._PA_72_[PER]
_____CCGG_AA_____
19._PA_72_[PER]
_____CCGG_AA_____
20._PA_72_[PER]
_____CCGG_AA_____
21._PA_72_[PER]
_____CCGG_AA_____
22._PA_72_[PER]
_____CCGG_AA_____
 1516171819202122232425262728
_Input profile
AAAAGGGGACGGAAGGACAGCCAGACGG
1._PA_72_[PER]
_TTCC_AC_TT_ACCTGGAGGTCC
2._GC-08-051-1-62
TTTTCC_ACGGTTCCACCTGGAGGTCC
3._GC-08-051-1-62
TTTTCC_ACGGTTCCACCTGGAGGTCC
4._GC-08-051-1-62
TTTTCC_ACGGTTCCACCTGGAGGTCC
5._GC-08-051-1-62
TTTTCC_ACGGTTCCACCTGGAGGTCC
6._GC-08-051-1-62
TTTTCC_ACGGTTCCACCTGGAGGTCC
7._GC-08-051-1-62
TTTTCC_ACGGTTCCACCTGGAGGTCC
8._GC-08-051-1-62
TTTTCC_ACGGTTCCACCTGGAGGTCC
9._GC-08-051-1-62
TTTTCC_ACGGTTCCACCTGGAGGTCC
10._GC-08-051-1-62
TTTTCC_ACGGTTCCACCTGGAGGTCC
11._GC-08-051-1-62
TTTTCC_ACGGTTCCACCTGGAGGTCC
12._PA_72_[PER]
_TTCC_AC_TT_ACCTGGAGGTCC
13._PA_72_[PER]
_TTCC_AC_TT_ACCTGGAGGTCC
14._PA_72_[PER]
_TTCC_AC_TT_ACCTGGAGGTCC
15._PA_72_[PER]
_TTCC_AC_TT_ACCTGGAGGTCC
16._PA_72_[PER]
_TTCC_AC_TT_ACCTGGAGGTCC
17._PA_72_[PER]
_TTCC_AC_TT_ACCTGGAGGTCC
18._PA_72_[PER]
_TTCC_AC_TT_ACCTGGAGGTCC
19._PA_72_[PER]
_TTCC_AC_TT_ACCTGGAGGTCC
20._PA_72_[PER]
_TTCC_AC_TT_ACCTGGAGGTCC
21._PA_72_[PER]
_TTCC_AC_TT_ACCTGGAGGTCC
22._PA_72_[PER]
_TTCC_AC_TT_ACCTGGAGGTCC
 2930313233343536373839404142
_Input profile
AGTTGGACGGAGGGGGGGCCTTAAGGGG
1._PA_72_[PER]
CT__AC-AG_CCGG__AA__
2._GC-08-051-1-62
CTAAGGAACCAGGGCCGGGGAAAAGGGG
3._GC-08-051-1-62
CTAAGGAACCAGGGCCGGGGAAAAGGGG
4._GC-08-051-1-62
CTAAGGAACCAGGGCCGGGGAAAAGGGG
5._GC-08-051-1-62
CTAAGGAACCAGGGCCGGGGAAAAGGGG
6._GC-08-051-1-62
CTAAGGAACCAGGGCCGGGGAAAAGGGG
7._GC-08-051-1-62
CTAAGGAACCAGGGCCGGGGAAAAGGGG
8._GC-08-051-1-62
CTAAGGAACCAGGGCCGGGGAAAAGGGG
9._GC-08-051-1-62
CTAAGGAACCAGGGCCGGGGAAAAGGGG
10._GC-08-051-1-62
CTAAGGAACCAGGGCCGGGGAAAAGGGG
11._GC-08-051-1-62
CTAAGGAACCAGGGCCGGGGAAAAGGGG
12._PA_72_[PER]
CT__ACCCAG_CCGG__AA__
13._PA_72_[PER]
CT__AACCAG_CCGG__AA__
14._PA_72_[PER]
CT__AACCAG_CCGG__AA__
15._PA_72_[PER]
CT__AACCAG_CCGG__AA__
16._PA_72_[PER]
CT__AACCAG_CCGG__AA__
17._PA_72_[PER]
CT__AACCAG_CCGG__AA__
18._PA_72_[PER]
CT__AACCAG_CCGG__AA__
19._PA_72_[PER]
CT__AACCAG_CCGG__AA__
20._PA_72_[PER]
CT__AACCAG_CCGG__AA__
21._PA_72_[PER]
CT__AACCAG_CCGG__AA__
22._PA_72_[PER]
CT__AACCAG_CCGG__AA__
 4344454647484950515253545556
_Input profile
AAAGGGGGGGATGGGGCCACAAACAGCG
1._PA_72_[PER]
AA___GG____AC_GT_CG
2._GC-08-051-1-62
AACTGGGGGGATCC_CCACAAGTAGCG
3._GC-08-051-1-62
AACTGGGGGGATCC_CCACAAGTAGCG
4._GC-08-051-1-62
AACTGGGGGGATCC_CCACAAGTAGCG
5._GC-08-051-1-62
AACTGGGGGGATCC_CCACAAGTAGCG
6._GC-08-051-1-62
AACTGGGGGGATCC_CCACAAGTAGCG
7._GC-08-051-1-62
AACTGGGGGGATCC_CCACAAGTAGCG
8._GC-08-051-1-62
AACTGGGGGGATCC_CCACAAGTAGCG
9._GC-08-051-1-62
AACTGGGGGGATCC_CCACAAGTAGCG
10._GC-08-051-1-62
AACTGGGGGGATCC_CCACAAGTAGCG
11._GC-08-051-1-62
AACTGGGGGGATCC_CCACAAGTAGCG
12._PA_72_[PER]
AA___GG____AC_GT_CG
13._PA_72_[PER]
AA___GG____AC_GT_CG
14._PA_72_[PER]
AA___GG____AC_GT_CG
15._PA_72_[PER]
AA___GG____AC_GT_CG
16._PA_72_[PER]
AA___GG____AC_GT_CG
17._PA_72_[PER]
AA___GG____AC_GT_CG
18._PA_72_[PER]
AA___GG____AC_GT_CG
19._PA_72_[PER]
AA___GG____AC_GT_CG
20._PA_72_[PER]
AA___GG____AC_GT_CG
21._PA_72_[PER]
AA___GG____AC_GT_CG
22._PA_72_[PER]
AA___GG____AC_GT_CG
 5758596061626364656667686970
_Input profile
CCGGAAAAAAAACCAGAAACCCAAAACC
1._PA_72_[PER]
CC__TT__-______TT
2._GC-08-051-1-62
CCCCTTTTAAAAGGAGTTGTGGTTAAGG
3._GC-08-051-1-62
CCCCTTTTAAAAGGAGTTGTGGTTAAGG
4._GC-08-051-1-62
CCCCTTTTAAAAGGAGTTGTGGTTAAGG
5._GC-08-051-1-62
CCCCTTTTAAAAGGAGTTGTGGTTAAGG
6._GC-08-051-1-62
CCCCTTTTAAAAGGAGTTGTGGTTAAGG
7._GC-08-051-1-62
CCCCTTTTAAAAGGAGTTGTGGTTAAGG
8._GC-08-051-1-62
CCCCTTTTAAAAGGAGTTGTGGTTAAGG
9._GC-08-051-1-62
CCCCTTTTAAAAGGAGTTGTGGTTAAGG
10._GC-08-051-1-62
CCCCTTTTAAAAGGAGTTGTGGTTAAGG
11._GC-08-051-1-62
CCCCTTTTAAAAGGAGTTGTGGTTAAGG
12._PA_72_[PER]
CC__TT__GG_______
13._PA_72_[PER]
CC__TT__GG_______
14._PA_72_[PER]
CC__TT__GG_______
15._PA_72_[PER]
CC__TT__GG_______
16._PA_72_[PER]
CC__TT__GG_______
17._PA_72_[PER]
CC__TT__GG_______
18._PA_72_[PER]
CC__TT__GG_______
19._PA_72_[PER]
CC__TT__GG_______
20._PA_72_[PER]
CC__TT__GG_______
21._PA_72_[PER]
CC__TT__GG_______
22._PA_72_[PER]
CC__TT__GG_______
 717273747576777879808182  
_Input profile
AGCCGGGGGGCCAGGGGGAAAGAGX_XX_X
1._PA_72_[PER]
_GGCC___CTGG_AACTAGX_XX_X
2._GC-08-051-1-62
AAGGCCCCGGCCCTGGCCAACTAGX_XX_X
3._GC-08-051-1-62
AAGGCCCCGGCCCTGGCCAACTAGX_XX_X
4._GC-08-051-1-62
AAGGCCCCGGCCCTGGCCAACTAGX_XX_X
5._GC-08-051-1-62
AAGGCCCCGGCCCTGGCCAACTAGX_XX_X
6._GC-08-051-1-62
AAGGCCCCGGCCCTGGCCAACTAGX_XX_X
7._GC-08-051-1-62
AAGGCCCCGGCCCTGGCCAACTAGX_XX_X
8._GC-08-051-1-62
AAGGCCCCGGCCCTGGCCAACTAGX_XX_X
9._GC-08-051-1-62
AAGGCCCCGGCCCTGGCCAACTAGX_XX_X
10._GC-08-051-1-62
AAGGCCCCGGCCCTGGCCAACTAGX_XX_X
11._GC-08-051-1-62
AAGGCCCCGGCCCTGGCCAACTAGX_XX_X
12._PA_72_[PER]
_GGCC___CTGG_AACTAGX_XX_X
13._PA_72_[PER]
_GGCC___CTGG_AACTAGX_XX_X
14._PA_72_[PER]
_GGCC___CTGG_AACTAGX_XX_X
15._PA_72_[PER]
_GGCC___CTGG_AACTAGX_XX_X
16._PA_72_[PER]
_GGCC___CTGG_AACTAGX_XX_X
17._PA_72_[PER]
_GGCC___CTGG_AACTAGX_XX_X
18._PA_72_[PER]
_GGCC___CTGG_AACTAGX_XX_X
19._PA_72_[PER]
_GGCC___CTGG_AACTAGX_XX_X
20._PA_72_[PER]
_GGCC___CTGG_AACTAGX_XX_X
21._PA_72_[PER]
_GGCC___CTGG_AACTAGX_XX_X
22._PA_72_[PER]
_GGCC___CTGG_AACTAGX_XX_X

Input profile: PA_72_[PER] GC-08-51-1-62

 
Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 62, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._PA_72_[PER]

50 %
34 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 633
 Dapeng Zhang, 2014

2._PA_72_[PER] GC-08-051-1-62

48.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

3._PA_72_[PER] GC-08-051-1-62

48.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

4._PA_72_[PER] GC-08-051-1-62

48.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

5._PA_72_[PER] GC-08-051-1-62

48.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

6._PA_72_[PER] GC-08-051-1-62

48.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

7._PA_72_[PER] GC-08-051-1-62

48.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._PA_72_[PER] GC-08-051-1-62

48.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

9._PA_72_[PER] GC-08-051-1-62

48.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._PA_72_[PER] GC-08-051-1-62

48.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

11._PA_72_[PER] GC-08-051-1-62

48.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

12._PA_72_[PER]

48.6 %
35 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 633
 Dapeng Zhang, 2016

13._PA_72_[PER]

47.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 7 > FP
 Dapeng Zhang, 2016

14._PA_72_[PER]

47.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 4 > FP
 Dapeng Zhang, 2016

15._PA_72_[PER]

47.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 1 > FP
 Dapeng Zhang, 2016

16._PA_72_[PER]

47.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 10
 Dapeng Zhang, 2016

17._PA_72_[PER]

47.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 9
 Dapeng Zhang, 2016

18._PA_72_[PER]

47.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 8
 Dapeng Zhang, 2016

19._PA_72_[PER]

47.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 6
 Dapeng Zhang, 2016

20._PA_72_[PER]

47.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 5
 Dapeng Zhang, 2016

21._PA_72_[PER]

47.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 3
 Dapeng Zhang, 2016

22._PA_72_[PER]

47.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998