SNP Profiles of PA 56 [PER]   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
ACACAGAAAAGGGGCCAAGGGGAAAGAC
1._RUQ_32
____________GG______________
2._RUQ_32
__________CCGG__AA__________
3._PA_56_[PER]
__________CCGG__AA__________
4._PA_56_[PER]
__________CCGG__AA__________
5._PA_56_[PER]
__________CCGG__AA__________
6._PA_56_[PER]
__________CCGG__AA__________
7._PA_56_[PER]
__________CCGG__AA__________
8._NA
ACACAGAATTCCGGGGAACCGGTTCTGT
9._NA
ACACAGAATTCCGGGGAACCGGTTCTGT
10._NA
ACACAGAATTCCGGGGAACCGGTTCTGT
11._NA
ACACAGAATTCCGGGGAACCGGTTCTGT
12._NA
ACACAGAATTCCGGGGAACCGGTTCTGT
13._PA_56_[PER]
__________CCGG__AA__________
14._RUQ_32
__________CC__GG____GG______
 1516171819202122232425262728
_Input profile
AAAAGGAGACGGAAGGCCAGCGGGCCGG
1._RUQ_32
__TT____________CC__CG______
2._RUQ_32
__TTCC__AC__TT__CCCTCGGGGGCC
3._PA_56_[PER]
__TTCC__AC__TT__CCCTCGGGGGCC
4._PA_56_[PER]
__TTCC__AC__TT__CCCTCGGGGGCC
5._PA_56_[PER]
__TTCC__AC__TT__CCCTCGGGGGCC
6._PA_56_[PER]
__TTCC__AC__TT__CCCTCGGGGGCC
7._PA_56_[PER]
__TTCC__AC__TT__CCCTCGGGGGCC
8._NA
TTTTCCTTACGGTTCCCCCTCGGGGGCC
9._NA
TTTTCCTTACGGTTCCCCCTCGGGGGCC
10._NA
TTTTCCTTACGGTTCCCCCTCGGGGGCC
11._NA
TTTTCCTTACGGTTCCCCCTCGGGGGCC
12._NA
TTTTCCTTACGGTTCCCCCTCGGGGGCC
13._PA_56_[PER]
__TTCC__AC__TT__CCCTCGGGGGCC
14._RUQ_32
__TT__CT______CCCCCTCGGGGGCC
 2930313233343536373839404142
_Input profile
GGTTGGACGGAGGGGGGGCCTTAAGGGG
1._RUQ_32
__________AG____________GG__
2._RUQ_32
CC____ACCCAG__CCGG____AA____
3._PA_56_[PER]
CC____ACCCAG__CCGG____AA____
4._PA_56_[PER]
CC____AACCAG__CCGG____AA____
5._PA_56_[PER]
CC____AACCAG__CCGG____AA____
6._PA_56_[PER]
CC____AACCAG__CCGG____AA____
7._PA_56_[PER]
CC____AACCAG__CCGG____AA____
8._NA
CCAAGGAACCAGGGCCGGGGAAAAGGGG
9._NA
CCAAGGAACCAGGGCCGGGGAAAAGGGG
10._NA
CCAAGGAACCAGGGCCGGGGAAAAGGGG
11._NA
CCAAGGAACCAGGGCCGGGGAAAAGGGG
12._NA
CCAAGGAACCAGGGCCGGGGAAAAGGGG
13._PA_56_[PER]
CC____AACCAG__CCGG____AA____
14._RUQ_32
____GGACCCAG__CC________GGGG
 4344454647484950515253545556
_Input profile
AAGGGGGGGGATGGGGCCACAGACAGCG
1._RUQ_32
__________________AA______CG
2._RUQ_32
AA______GG________AC__GT__CG
3._PA_56_[PER]
AA______GG________AC__GT__CG
4._PA_56_[PER]
AA______GG________AC__GT__CG
5._PA_56_[PER]
AA______GG________AC__GT__CG
6._PA_56_[PER]
AA______GG________AC__GT__CG
7._PA_56_[PER]
AA______GG________AC__GT__CG
8._NA
AACCGGGGGGATCC__CCACAGGTAGCG
9._NA
AACCGGGGGGATCC__CCACAGGTAGCG
10._NA
AACCGGGGGGATCC__CCACAGGTAGCG
11._NA
AACCGGGGGGATCC__CCACAGGTAGCG
12._NA
__CCGGGGGGATCC__CCACAGGTAGCG
13._PA_56_[PER]
________GG________AC__GT__CG
14._RUQ_32
AA__________CC____AC__GT__CG
 5758596061626364656667686970
_Input profile
CCGGAAAAGGAACCAGAAAACCAAAACG
1._RUQ_32
CC__________GGAG________AATT
2._RUQ_32
CC____TT____GG______________
3._PA_56_[PER]
CC____TT____GG______________
4._PA_56_[PER]
CC____TT____GG______________
5._PA_56_[PER]
CC____TT____GG______________
6._PA_56_[PER]
CC____TT____GG______________
7._PA_56_[PER]
CC____TT____GG______________
8._NA
CCCCTTTTAAAAGGAGTTTTGGTTAACG
9._NA
CCCCTTTTAAAAGGAGTTTTGGTTAACG
10._NA
CCCCTTTTAAAAGGAGTTTTGGTTAACG
11._NA
CCCCTTTTAAAAGGAGTTTTGGTTAACG
12._NA
CCCCTTTTAAAAGGAGTTTTGGTTAACG
13._PA_56_[PER]
CC____TT____GG______________
14._RUQ_32
CC__TTTT____GGAGTT____TTAA__
 717273747576777879808182  
_Input profile
GGCCGGGGGGCCAGGGGGAAAGAGX_XX_X
1._RUQ_32
__GG____GG____________AGX_XX_X
2._RUQ_32
__GGCC______CTGG__AACTAGX_XX_X
3._PA_56_[PER]
__GGCC______CTGG__AACTAGX_XX_X
4._PA_56_[PER]
__GGCC______CTGG__AACTAGX_XX_X
5._PA_56_[PER]
__GGCC______CTGG__AACTAGX_XX_X
6._PA_56_[PER]
__GGCC______CTGG__AACTAGX_XX_X
7._PA_56_[PER]
__GGCC______CTGG__AACTAGX_XX_X
8._NA
__GGCCCCGGCCCTGGCCAACTAGX_XX_X
9._NA
__GGCCCCGGCCCTGGCCAACTAGX_XX_X
10._NA
__GGCCCCGGCCCTGGCCAACTAGX_XX_X
11._NA
__GGCCCCGGCCCTGGCCAACTAGX_XX_X
12._NA
__GGCCCCGGCCCTGGCCAACTAGX_XX_X
13._PA_56_[PER]
__GGCC______CTGG__AACTAGX_XX_X
14._RUQ_32
__GGCC____CC__________AGX_XX_X

Input profile: PA_56_[PER] -

 
Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 76, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._PA_56_[PER] RUQ_32

71.9 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._PA_56_[PER] RUQ_32

51.4 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

3._PA_56_[PER]

51.4 %
35 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 238
 Dapeng Zhang, 2016

4._PA_56_[PER]

50 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 6
 Dapeng Zhang, 2016

5._PA_56_[PER]

50 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 4
 Dapeng Zhang, 2016

6._PA_56_[PER]

50 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 3
 Dapeng Zhang, 2016

7._PA_56_[PER]

50 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 2
 Dapeng Zhang, 2016

8._PA_56_[PER] NA

49.4 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: Dead
 Mars, 2018

9._PA_56_[PER] NA

49.4 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: Dead
 Mars, 2018

10._PA_56_[PER] NA

49.4 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

11._PA_56_[PER] NA

49.4 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

12._PA_56_[PER] NA

48.7 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

13._PA_56_[PER]

48.5 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

14._PA_56_[PER] RUQ_32

47.2 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998