SNP Profiles of PA 56 [PER] View Data

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_Input profile	AC	AC	AG	AA	AA	GG	GG	CC	AA	GG	GG	AA	AG	AC
1._RUQ_32	__	__	__	__	__	__	GG	__	__	__	__	__	__	__
2._RUQ_32	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
3._PA_56_[PER]	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
4._PA_56_[PER]	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
5._PA_56_[PER]	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
6._PA_56_[PER]	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
7._PA_56_[PER]	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
8._NA	AC	AC	AG	AA	TT	CC	GG	GG	AA	CC	GG	TT	CT	GT
9._NA	AC	AC	AG	AA	TT	CC	GG	GG	AA	CC	GG	TT	CT	GT
10._NA	AC	AC	AG	AA	TT	CC	GG	GG	AA	CC	GG	TT	CT	GT
11._NA	AC	AC	AG	AA	TT	CC	GG	GG	AA	CC	GG	TT	CT	GT
12._NA	AC	AC	AG	AA	TT	CC	GG	GG	AA	CC	GG	TT	CT	GT
13._PA_56_[PER]	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
14._RUQ_32	__	__	__	__	__	CC	__	GG	__	__	GG	__	__	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	GG	AG	AC	GG	AA	GG	CC	AG	CG	GG	CC	GG
1._RUQ_32	__	TT	__	__	__	__	__	__	CC	__	CG	__	__	__
2._RUQ_32	__	TT	CC	__	AC	__	TT	__	CC	CT	CG	GG	GG	CC
3._PA_56_[PER]	__	TT	CC	__	AC	__	TT	__	CC	CT	CG	GG	GG	CC
4._PA_56_[PER]	__	TT	CC	__	AC	__	TT	__	CC	CT	CG	GG	GG	CC
5._PA_56_[PER]	__	TT	CC	__	AC	__	TT	__	CC	CT	CG	GG	GG	CC
6._PA_56_[PER]	__	TT	CC	__	AC	__	TT	__	CC	CT	CG	GG	GG	CC
7._PA_56_[PER]	__	TT	CC	__	AC	__	TT	__	CC	CT	CG	GG	GG	CC
8._NA	TT	TT	CC	TT	AC	GG	TT	CC	CC	CT	CG	GG	GG	CC
9._NA	TT	TT	CC	TT	AC	GG	TT	CC	CC	CT	CG	GG	GG	CC
10._NA	TT	TT	CC	TT	AC	GG	TT	CC	CC	CT	CG	GG	GG	CC
11._NA	TT	TT	CC	TT	AC	GG	TT	CC	CC	CT	CG	GG	GG	CC
12._NA	TT	TT	CC	TT	AC	GG	TT	CC	CC	CT	CG	GG	GG	CC
13._PA_56_[PER]	__	TT	CC	__	AC	__	TT	__	CC	CT	CG	GG	GG	CC
14._RUQ_32	__	TT	__	CT	__	__	__	CC	CC	CT	CG	GG	GG	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	GG	TT	GG	AC	GG	AG	GG	GG	GG	CC	TT	AA	GG	GG
1._RUQ_32	__	__	__	__	__	AG	__	__	__	__	__	__	GG	__
2._RUQ_32	CC	__	__	AC	CC	AG	__	CC	GG	__	__	AA	__	__
3._PA_56_[PER]	CC	__	__	AC	CC	AG	__	CC	GG	__	__	AA	__	__
4._PA_56_[PER]	CC	__	__	AA	CC	AG	__	CC	GG	__	__	AA	__	__
5._PA_56_[PER]	CC	__	__	AA	CC	AG	__	CC	GG	__	__	AA	__	__
6._PA_56_[PER]	CC	__	__	AA	CC	AG	__	CC	GG	__	__	AA	__	__
7._PA_56_[PER]	CC	__	__	AA	CC	AG	__	CC	GG	__	__	AA	__	__
8._NA	CC	AA	GG	AA	CC	AG	GG	CC	GG	GG	AA	AA	GG	GG
9._NA	CC	AA	GG	AA	CC	AG	GG	CC	GG	GG	AA	AA	GG	GG
10._NA	CC	AA	GG	AA	CC	AG	GG	CC	GG	GG	AA	AA	GG	GG
11._NA	CC	AA	GG	AA	CC	AG	GG	CC	GG	GG	AA	AA	GG	GG
12._NA	CC	AA	GG	AA	CC	AG	GG	CC	GG	GG	AA	AA	GG	GG
13._PA_56_[PER]	CC	__	__	AA	CC	AG	__	CC	GG	__	__	AA	__	__
14._RUQ_32	__	__	GG	AC	CC	AG	__	CC	__	__	__	__	GG	GG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AA	GG	GG	GG	GG	AT	GG	GG	CC	AC	AG	AC	AG	CG
1._RUQ_32	__	__	__	__	__	__	__	__	__	AA	__	__	__	CG
2._RUQ_32	AA	__	__	__	GG	__	__	__	__	AC	__	GT	__	CG
3._PA_56_[PER]	AA	__	__	__	GG	__	__	__	__	AC	__	GT	__	CG
4._PA_56_[PER]	AA	__	__	__	GG	__	__	__	__	AC	__	GT	__	CG
5._PA_56_[PER]	AA	__	__	__	GG	__	__	__	__	AC	__	GT	__	CG
6._PA_56_[PER]	AA	__	__	__	GG	__	__	__	__	AC	__	GT	__	CG
7._PA_56_[PER]	AA	__	__	__	GG	__	__	__	__	AC	__	GT	__	CG
8._NA	AA	CC	GG	GG	GG	AT	CC	__	CC	AC	AG	GT	AG	CG
9._NA	AA	CC	GG	GG	GG	AT	CC	__	CC	AC	AG	GT	AG	CG
10._NA	AA	CC	GG	GG	GG	AT	CC	__	CC	AC	AG	GT	AG	CG
11._NA	AA	CC	GG	GG	GG	AT	CC	__	CC	AC	AG	GT	AG	CG
12._NA	__	CC	GG	GG	GG	AT	CC	__	CC	AC	AG	GT	AG	CG
13._PA_56_[PER]	__	__	__	__	GG	__	__	__	__	AC	__	GT	__	CG
14._RUQ_32	AA	__	__	__	__	__	CC	__	__	AC	__	GT	__	CG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	CC	GG	AA	AA	GG	AA	CC	AG	AA	AA	CC	AA	AA	CG
1._RUQ_32	CC	__	__	__	__	__	GG	AG	__	__	__	__	AA	TT
2._RUQ_32	CC	__	__	TT	__	__	GG	__	__	__	__	__	__	__
3._PA_56_[PER]	CC	__	__	TT	__	__	GG	__	__	__	__	__	__	__
4._PA_56_[PER]	CC	__	__	TT	__	__	GG	__	__	__	__	__	__	__
5._PA_56_[PER]	CC	__	__	TT	__	__	GG	__	__	__	__	__	__	__
6._PA_56_[PER]	CC	__	__	TT	__	__	GG	__	__	__	__	__	__	__
7._PA_56_[PER]	CC	__	__	TT	__	__	GG	__	__	__	__	__	__	__
8._NA	CC	CC	TT	TT	AA	AA	GG	AG	TT	TT	GG	TT	AA	CG
9._NA	CC	CC	TT	TT	AA	AA	GG	AG	TT	TT	GG	TT	AA	CG
10._NA	CC	CC	TT	TT	AA	AA	GG	AG	TT	TT	GG	TT	AA	CG
11._NA	CC	CC	TT	TT	AA	AA	GG	AG	TT	TT	GG	TT	AA	CG
12._NA	CC	CC	TT	TT	AA	AA	GG	AG	TT	TT	GG	TT	AA	CG
13._PA_56_[PER]	CC	__	__	TT	__	__	GG	__	__	__	__	__	__	__
14._RUQ_32	CC	__	TT	TT	__	__	GG	AG	TT	__	__	TT	AA	__

	71	72	73	74	75	76	77	78	79	80	81	82
_Input profile	GG	CC	GG	GG	GG	CC	AG	GG	GG	AA	AG	AG	X_X	X_X
1._RUQ_32	__	GG	__	__	GG	__	__	__	__	__	__	AG	X_X	X_X
2._RUQ_32	__	GG	CC	__	__	__	CT	GG	__	AA	CT	AG	X_X	X_X
3._PA_56_[PER]	__	GG	CC	__	__	__	CT	GG	__	AA	CT	AG	X_X	X_X
4._PA_56_[PER]	__	GG	CC	__	__	__	CT	GG	__	AA	CT	AG	X_X	X_X
5._PA_56_[PER]	__	GG	CC	__	__	__	CT	GG	__	AA	CT	AG	X_X	X_X
6._PA_56_[PER]	__	GG	CC	__	__	__	CT	GG	__	AA	CT	AG	X_X	X_X
7._PA_56_[PER]	__	GG	CC	__	__	__	CT	GG	__	AA	CT	AG	X_X	X_X
8._NA	__	GG	CC	CC	GG	CC	CT	GG	CC	AA	CT	AG	X_X	X_X
9._NA	__	GG	CC	CC	GG	CC	CT	GG	CC	AA	CT	AG	X_X	X_X
10._NA	__	GG	CC	CC	GG	CC	CT	GG	CC	AA	CT	AG	X_X	X_X
11._NA	__	GG	CC	CC	GG	CC	CT	GG	CC	AA	CT	AG	X_X	X_X
12._NA	__	GG	CC	CC	GG	CC	CT	GG	CC	AA	CT	AG	X_X	X_X
13._PA_56_[PER]	__	GG	CC	__	__	__	CT	GG	__	AA	CT	AG	X_X	X_X
14._RUQ_32	__	GG	CC	__	__	CC	__	__	__	__	__	AG	X_X	X_X

Input profile: PA_56_[PER] -

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Mars Center for Cocoa Science, Brazil

Location: Field: 8, Block: 1, Rep: 76, Tree: 1

Notes: MCCS_Structure_refs_above_0.9membership

1._PA_56_[PER] RUQ_32

71.9 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

2._PA_56_[PER] RUQ_32

51.4 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

3._PA_56_[PER]

51.4 %
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D 238

Dapeng Zhang, 2016

4._PA_56_[PER]

50 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8176 6

Dapeng Zhang, 2016

5._PA_56_[PER]

50 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8176 4

Dapeng Zhang, 2016

6._PA_56_[PER]

50 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8176 3

Dapeng Zhang, 2016

7._PA_56_[PER]

50 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8176 2

Dapeng Zhang, 2016

8._PA_56_[PER] NA

49.4 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: Dead

9._PA_56_[PER] NA

49.4 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: Dead

10._PA_56_[PER] NA

49.4 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

11._PA_56_[PER] NA

49.4 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

12._PA_56_[PER] NA

48.7 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

13._PA_56_[PER]

48.5 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8176 1

Dapeng Zhang, 2016

14._PA_56_[PER] RUQ_32

47.2 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1350	20	TcSNP1383
21	TcSNP1414	22	TcSNP1439	23	TcSNP144	24	TcSNP1442	25	TcSNP1458
26	TcSNP1484	27	TcSNP150	28	TcSNP151	29	TcSNP1520	30	TcSNP154
31	TcSNP174	32	TcSNP193	33	TcSNP226	34	TcSNP230	35	TcSNP240
36	TcSNP242	37	TcSNP25	38	TcSNP28	39	TcSNP316	40	TcSNP32
41	TcSNP329	42	TcSNP364	43	TcSNP372	44	TcSNP413	45	TcSNP418
46	TcSNP42	47	TcSNP429	48	TcSNP430	49	TcSNP448	50	TcSNP497
51	TcSNP521	52	TcSNP529	53	TcSNP547	54	TcSNP560	55	TcSNP561
56	TcSNP577	57	TcSNP591	58	TcSNP60	59	TcSNP602	60	TcSNP619
61	TcSNP653	62	TcSNP689	63	TcSNP723	64	TcSNP731	65	TcSNP75
66	TcSNP751	67	TcSNP776	68	TcSNP799	69	TcSNP823	70	TcSNP836
71	TcSNP860	72	TcSNP872	73	TcSNP891	74	TcSNP894	75	TcSNP899
76	TcSNP90	77	TcSNP917	78	TcSNP929	79	TcSNP944	80	TcSNP953
81	TcSNP994	82	TcSNP998