SNP Profiles of GU 175   View Data

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 Key

 1234567891011121314
_Input profile
CCACAGCCAAGGGGCCAAGGGGAAGGAA
1._MITC-000401
CCACAGAAAAGGAACCAAGGGGAAAACC
2._GC-01-100-5-17
CCACAGCCTTCCGGGGAACCGGTTCCTT
3._GC-01-100-5-17
CCACAGCCTTCCGGGGAACCGGTTCCTT
4._GC-01-100-5-17
CCACAGCCTTCCGGGGAACCGGTTCCTT
5._GC-01-100-5-17
CCACAGCCTTCCGGGGAACCGGTTCCTT
6._GC-01-100-5-17
CCACAGCCTTCCGGGGAACCGGTTCCTT
7._GC-01-100-5-17
CCACAGCCTTCCGGGGAACCGGTTCCTT
8._GC-05-097-2-48
CCACAGCCTTCCGGGGAACCGGTTCCTT
9._GC-05-097-2-48
CCACAGCCTTCCGGGGAACCGGTTCCTT
10._GC-05-097-2-48
CCACAGCCTTCCGGGGAACCGGTTCCTT
11._GC-05-097-2-48
CCACAGCCTTCCGGGGAACCGGTTCCTT
12._GC-01-100-5-17
CC_AGCCTTCCGGGGAACCGGTTCCTT
 1516171819202122232425262728
_Input profile
AAAAAAAAGGAAGGAAGGCCGGAAAAGG
1._MITC-000401
AAAAGGAGAGAAAACCGGCCAAACGGAA
2._GC-01-100-5-17
TTTTTTTTGGTTCCAACCGGGGTTTTCC
3._GC-01-100-5-17
TTTTTTTTGGTTCCAACCGGGGTTTTCC
4._GC-01-100-5-17
TTTTTTTTGGTTCCAACCGGGGTTTTCC
5._GC-01-100-5-17
TTTTTTTTGGTTCCAACCGGGGTTTTCC
6._GC-01-100-5-17
TTTTTTTTGGTTCCAACCGGGGTTTTCC
7._GC-01-100-5-17
TTTTTTTTGGTTCCAACCGGGGTTTTCC
8._GC-05-097-2-48
TTTTTTTTGGTTCCAACCGGGGTTTTCC
9._GC-05-097-2-48
TTTTTTTTGGTTCCAACCGGGGTTTTCC
10._GC-05-097-2-48
TTTTTTTTGGTTCCAACCGGGGTTTTCC
11._GC-05-097-2-48
TTTTTTTTGGTTCCAACCGGGGTTTTCC
12._GC-01-100-5-17
TTTTTTTTGGTTCCAACCGGGGTTTTCC
 2930313233343536373839404142
_Input profile
TTGGAAGGGGGGGGGGTTTTGGGGAAAA
1._MITC-000401
TTAGAACGAGGGGGGGATTTGGAGATAA
2._GC-01-100-5-17
AAGGAACCGGGGCCGGAATTGGGGAATT
3._GC-01-100-5-17
AAGGAACCGGGGCCGGAATTGGGGAATT
4._GC-01-100-5-17
AAGGAACCGGGGCCGGAATTGGGGAATT
5._GC-01-100-5-17
AAGGAACCGGGGCCGGAATTGGGGAATT
6._GC-01-100-5-17
AAGGAACCGGGGCCGGAATTGGGGAATT
7._GC-01-100-5-17
AAGGAACCGGGGCCGGAATTGGGGAATT
8._GC-05-097-2-48
AAGGAACCGGGGCCGGAATTGGGGAATT
9._GC-05-097-2-48
AAGGAACCGGGGCCGGAATTGGGGAATT
10._GC-05-097-2-48
AAGGAACCGGGGCCGGAATTGGGGAATT
11._GC-05-097-2-48
AAGGAACCGGGGCCGGAATTGGGGAATT
12._GC-01-100-5-17
AAGGAACCGGGGCCGGAATTGGGGAATT
 4344454647484950515253545556
_Input profile
GGGGGGTTGGAACCAAGGCCAGCCCCGG
1._MITC-000401
GGGGGGTTCGAACCCCGGAAAGCCAAGG
2._GC-01-100-5-17
GGGGGGTTCC_CCAAGGGGAGCCCC_
3._GC-01-100-5-17
GGGGGGTTCC_CCAAGGGGAGCCCCCC
4._GC-01-100-5-17
GGGGGGTTCC_CCAAGGGGAGCCCCCC
5._GC-01-100-5-17
GGGGGGTTCC_CCAAGGGGAGCCCCCC
6._GC-01-100-5-17
GGGGGGTTCC_CCAAGGGGAGCCCCCC
7._GC-01-100-5-17
GGGGGGTTCC_CCAAGGGGAGCCCCCC
8._GC-05-097-2-48
GGGGGGTTCC_CCAAGGGGAGCCCCCC
9._GC-05-097-2-48
GGGGGGTTCC_CCAAGGGGAGCCCCCC
10._GC-05-097-2-48
GGGGGGTTCC_CCAAGGGGAGCCCCCC
11._GC-05-097-2-48
GGGGGGTTCC_CCAAGGGGAGCCCCCC
12._GC-01-100-5-17
GGGGGGTTCC_CCAAGGGGAGCCCCCC
 5758596061626364656667686970
_Input profile
GGGGAAAACCAAAACCAAAAAACCGGCC
1._MITC-000401
AAAGAGAACCGGAAAAAAAAACCCGGCC
2._GC-01-100-5-17
CCCCAAAAGGAATTGGTTTTAAGG_GG
3._GC-01-100-5-17
CCCCAAAAGGAATTGGTTTTAAGG_GG
4._GC-01-100-5-17
CCCCAAAAGGAATTGGTTTTAAGG_GG
5._GC-01-100-5-17
CCCCAAAAGGAATTGGTTTTAAGG_GG
6._GC-01-100-5-17
CCCCAAAAGGAATTGGTTTTAAGG_GG
7._GC-01-100-5-17
CCCCAAAAGGAATTGGTTTTAAGG_GG
8._GC-05-097-2-48
CCCCAAAAGGAATTGGTTTTAAGG_GG
9._GC-05-097-2-48
CCCCAAAAGGAATTGGTTTTAAGG_GG
10._GC-05-097-2-48
CCCCAAAAGGAATTGGTTTTAAGG_GG
11._GC-05-097-2-48
CCCCAAAAGGAATTGGTTTTAAGG_GG
12._GC-01-100-5-17
CCCCAAAAGGAATTGGTTTTAAGG_GG
 71727374757677787980    
_Input profile
GGGGGGCCGGGGGGAAGGAAX_XX_XX_XX_X
1._MITC-000401
GGGGAACCAACGGGAAAAAGX_XX_XX_XX_X
2._GC-01-100-5-17
CCCCGGCCCCGGCCAACCAAX_XX_XX_XX_X
3._GC-01-100-5-17
CCCCGGCCCCGGCCAACCAAX_XX_XX_XX_X
4._GC-01-100-5-17
CCCCGGCCCCGGCCAACCAAX_XX_XX_XX_X
5._GC-01-100-5-17
CCCCGGCCCCGGCCAACCAAX_XX_XX_XX_X
6._GC-01-100-5-17
CCCCGGCCCCGGCCAACCAAX_XX_XX_XX_X
7._GC-01-100-5-17
CCCCGGCCCCGGCCAACCAAX_XX_XX_XX_X
8._GC-05-097-2-48
CCCCGGCCCCGGCCAACCAAX_XX_XX_XX_X
9._GC-05-097-2-48
CCCCGGCCCCGGCCAACCAAX_XX_XX_XX_X
10._GC-05-097-2-48
CCCCGGCCCCGGCCAACCAAX_XX_XX_XX_X
11._GC-05-097-2-48
CCCCGGCCCCGGCCAACCAAX_XX_XX_XX_X
12._GC-01-100-5-17
CCCCGGCCCCGGCCAACCAAX_XX_XX_XX_X

Input profile: GU_175 GC-01-100-5-17

 
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 17, Tree: 6
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._GU_175 MITC-000401

66.9 %
80 shared markers

USDA-SHRS, United States of America
 Mars, 2018

2._GU_175 GC-01-100-5-17

49.4 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

3._GU_175 GC-01-100-5-17

48.7 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

4._GU_175 GC-01-100-5-17

48.7 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

5._GU_175 GC-01-100-5-17

48.7 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

6._GU_175 GC-01-100-5-17

48.7 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

7._GU_175 GC-01-100-5-17

48.7 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

8._GU_175 GC-05-097-2-48

48.7 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

9._GU_175 GC-05-097-2-48

48.7 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

10._GU_175 GC-05-097-2-48

48.7 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

11._GU_175 GC-05-097-2-48

48.7 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

12._GU_175 GC-01-100-5-17

48.1 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP2
 Mars, 2018

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1383 20TcSNP1414
21TcSNP1439 22TcSNP144 23TcSNP1442 24TcSNP1458 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP316 38TcSNP32 39TcSNP329 40TcSNP364
41TcSNP372 42TcSNP413 43TcSNP418 44TcSNP42 45TcSNP429
46TcSNP430 47TcSNP448 48TcSNP497 49TcSNP521 50TcSNP529
51TcSNP547 52TcSNP560 53TcSNP561 54TcSNP577 55TcSNP591
56TcSNP60 57TcSNP602 58TcSNP619 59TcSNP653 60TcSNP689
61TcSNP723 62TcSNP731 63TcSNP75 64TcSNP751 65TcSNP776
66TcSNP799 67TcSNP823 68TcSNP836 69TcSNP860 70TcSNP872
71TcSNP891 72TcSNP894 73TcSNP899 74TcSNP90 75TcSNP917
76TcSNP929 77TcSNP944 78TcSNP953 79TcSNP994 80TcSNP998