SNP Profiles of GU 171 /C   View Data

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 Key

 1234567891011121314
_Input profile
CCCCGGCCAAGGGGCCAAGGGGAAGGAA
1._RUQ_195
CCCCGGCCAAGGGGCCAAGGGGAAGGAA
2._GC-01-94-5-11
CCCCGGCCAAGGGGCCAAGGGGAAGGAA
3._RUQ_195
____________GG______________
4._GU_171_/C
__________CCGG__AA__________
5._GU_171_/C
__________CCGG__AA__________
6._GU_171_/C
__________CCGG__AA__________
7._GU_171_/C
__________CCGG__AA__________
8._GU_171_/C
__________CCGG__AA__________
9._GU_171_/C
__________CCGG__AA__________
10._GU_171_/C
__________CCGG__AA__________
11._GC-01-094-5-11
CCCCGGCCTTCCGGGGAACCGGTTCCTT
12._GC-01-094-5-11
CCCCGGCCTTCCGGGGAACCGGTTCCTT
13._GC-01-094-5-11
CCCCGGCCTTCCGGGGAACCGGTTCCTT
14._GC-01-094-5-11
CCCCGGCCTTCCGGGGAACCGGTTCCTT
15._GC-01-094-5-11
CCCCGGCCTTCCGGGGAACCGGTTCCTT
16._GC-01-094-5-11
CCCCGGCCTTCCGGGGAACCGGTTCCTT
17._GC-01-094-5-11
CCCCGGCCTTCCGGGGAACCGGTTCCTT
18._RUQ_195
__________CC__GG____GG______
19._RUQ_195
__________CCGG__AA__________
 1516171819202122232425262728
_Input profile
AAAAAAAAGGAAGGAAGGCCAAAAAAGG
1._RUQ_195
AAAAAAAAGGAAGGAAGGCCAAAAAAGG
2._GC-01-94-5-11
AAAAAAAAGGAAGGAAGGCCAAAAAAGG
3._RUQ_195
__TT__________AA__GG________
4._GU_171_/C
__TTTT____TT__AACCGGAATTTTCC
5._GU_171_/C
__TTTT____TT__AACCGGAATTTTCC
6._GU_171_/C
__TTTT____TT__AACCGGAATTTTCC
7._GU_171_/C
__TTTT____TT__AACCGGAATTTTCC
8._GU_171_/C
__TTTT____TT__AACCGGAATTTTCC
9._GU_171_/C
__TTTT____TT__AACCGGAATTTTCC
10._GU_171_/C
__TTTT____TT__AACCGGAATTTTCC
11._GC-01-094-5-11
TTTTTTTTGGTTCCAACCGGAATTTTCC
12._GC-01-094-5-11
TTTTTTTTGGTTCCAACCGGAATTTTCC
13._GC-01-094-5-11
TTTTTTTTGGTTCCAACCGGAATTTTCC
14._GC-01-094-5-11
TTTTTTTTGGTTCCAACCGGAATTTTCC
15._GC-01-094-5-11
TTTTTTTTGGTTCCAACCGGAATTTTCC
16._GC-01-094-5-11
TTTTTTTTGGTTCCAACCGGAATTTTCC
17._GC-01-094-5-11
TTTTTTTTGGTTCCAACCGGAATTTTCC
18._RUQ_195
__TT__TT____CCAACCGGAATTTT__
19._RUQ_195
__TTTT____TT__AACCGGAGTTTTCC
 2930313233343536373839404142
_Input profile
TTGGAAGGGGGGGGGGCCTTTTGGGGAA
1._RUQ_195
TTGGAAGGGGGGGGGGCCTTTTGGGGAA
2._GC-01-94-5-11
TTGGAAGGGGGGGGGG__TTTTGGGGAA
3._RUQ_195
________GG____________GG____
4._GU_171_/C
____AACCGG__CCGG____TT____AA
5._GU_171_/C
____AACCGG__CCGG____TT____AA
6._GU_171_/C
____AACCGG__CCGG____TT____AA
7._GU_171_/C
____AACCGG__CCGG____TT____AA
8._GU_171_/C
____AACCGG__CCGG____TT____AA
9._GU_171_/C
____AACCGG__CCGG____TT____AA
10._GU_171_/C
____AACCGG__CCGG____TT____AA
11._GC-01-094-5-11
AAGGAACCGGGGCCGGGGAATTGGGGAA
12._GC-01-094-5-11
AAGGAACCGGGGCCGGGGAATTGGGGAA
13._GC-01-094-5-11
AAGGAACCGGGGCCGGGGAATTGGGGAA
14._GC-01-094-5-11
AAGGAACCGGGGCCGGGGAATTGGGGAA
15._GC-01-094-5-11
AAGGAACCGGGGCCGGGGAATTGGGGAA
16._GC-01-094-5-11
AAGGAACCGGGGCCGGGGAATTGGGGAA
17._GC-01-094-5-11
AAGGAACCGGGGCCGGGGAATTGGGGAA
18._RUQ_195
__GGAACCGG__CC________GGGGAA
19._RUQ_195
____AACCGG__CCGG____TT____AA
 4344454647484950515253545556
_Input profile
AAGGGGGGTTGGAACCAAGGCCGGCCCC
1._RUQ_195
AAGGGGGGTTGGAACCAAGGCCGGCCCC
2._GC-01-94-5-11
AAGGGGGGTTGGAACCAAGGCCGGCCCC
3._RUQ_195
________________________CCCC
4._GU_171_/C
______GG________AA__GG__CCCC
5._GU_171_/C
______GG________AA__GG__CCCC
6._GU_171_/C
______GG________AA__GG__CCCC
7._GU_171_/C
______GG________AA__GG__CCCC
8._GU_171_/C
______GG________AA__GG__CCCC
9._GU_171_/C
______GG________AA__GG__CCCC
10._GU_171_/C
______GG________AA__GG__CCCC
11._GC-01-094-5-11
TTGGGGGGTTCC__CCAAGGGGGGCCCC
12._GC-01-094-5-11
TTGGGGGGTTCC__CCAAGGGGGGCCCC
13._GC-01-094-5-11
TTGGGGGGTTCC__CCAAGGGGGGCCCC
14._GC-01-094-5-11
TTGGGGGGTTCC__CCAAGGGGGGCCCC
15._GC-01-094-5-11
TTGGGGGGTTCC__CCAAGGGGGGCCCC
16._GC-01-094-5-11
TTGGGGGGTTCC__CCAAGGGGGGCCCC
17._GC-01-094-5-11
TTGGGGGGTTCC__CCAAGGGGGGCCCC
18._RUQ_195
__________CC____AA__GG__CCCC
19._RUQ_195
______AG________AA__GG__CCCC
 5758596061626364656667686970
_Input profile
GGGGGGGGAACCAAAAACAAAAAACCGG
1._RUQ_195
GGGGGGGGAACCAAAAACAAAAAACCGG
2._GC-01-94-5-11
GGGGGGGGAACCAAAAACAAAAAACCGG
3._RUQ_195
__CC______GGAA________AACC__
4._GU_171_/C
____CC____GG________________
5._GU_171_/C
____CC____GG________________
6._GU_171_/C
____CC____GG________________
7._GU_171_/C
____CC____GG________________
8._GU_171_/C
____CC____GG________________
9._GU_171_/C
____CC____GG________________
10._GU_171_/C
____CC____GG________________
11._GC-01-094-5-11
CCCCCCAAAAGGAATTGTTTTTAAGG__
12._GC-01-094-5-11
CCCCCCAAAAGGAATTGTTTTTAAGG__
13._GC-01-094-5-11
CCCCCCAAAAGGAATTGTTTTTAAGG__
14._GC-01-094-5-11
CCCCCCAAAAGGAATTGTTTTTAAGG__
15._GC-01-094-5-11
CCCCCCAAAAGGAATTGTTTTTAAGG__
16._GC-01-094-5-11
CCCCCCAAAAGGAATTGTTTTTAAGG__
17._GC-01-094-5-11
CCCCCCAAAAGGAATTGTTTTTAAGG__
18._RUQ_195
__CCCC____GGAATT____TTAA____
19._RUQ_195
____CC____GG________________
 7172737475767778798081   
_Input profile
CCGGGGGGCCGGGGGGAAAAAAX_XX_XX_X
1._RUQ_195
CCGGGGGGCCGGGGGGAAAAAAX_XX_XX_X
2._GC-01-94-5-11
CCGGGGGGCCGGGGGGAAAAAAX_XX_XX_X
3._RUQ_195
GG____GG____________AAX_XX_XX_X
4._GU_171_/C
GGCC______CCGG__AATTAAX_XX_XX_X
5._GU_171_/C
GGCC______CCGG__AATTAAX_XX_XX_X
6._GU_171_/C
GGCC______CCGG__AATTAAX_XX_XX_X
7._GU_171_/C
GGCC______CCGG__AATTAAX_XX_XX_X
8._GU_171_/C
GGCC______CCGG__AATTAAX_XX_XX_X
9._GU_171_/C
GGCC______CCGG__AATTAAX_XX_XX_X
10._GU_171_/C
GGCC______CCGG__AATTAAX_XX_XX_X
11._GC-01-094-5-11
GGCCCCGGCCCCGGCCAATTAAX_XX_XX_X
12._GC-01-094-5-11
GGCCCCGGCCCCGGCCAATTAAX_XX_XX_X
13._GC-01-094-5-11
GGCCCCGGCCCCGGCCAATTAAX_XX_XX_X
14._GC-01-094-5-11
GGCCCCGGCCCCGGCCAATTAAX_XX_XX_X
15._GC-01-094-5-11
GGCCCCGGCCCCGGCCAATTAAX_XX_XX_X
16._GC-01-094-5-11
GGCCCCGGCCCCGGCCAATTAAX_XX_XX_X
17._GC-01-094-5-11
GGCCCCGG__CCGGCCAATTAAX_XX_XX_X
18._RUQ_195
GGCC__GGCC__________AAX_XX_XX_X
19._RUQ_195
GGCC______CCGG__AATTAAX_XX_XX_X

Input profile: GU_171_/C GC-01-94-5-11

 
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 11, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._GU_171_/C RUQ_195

identical
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._GU_171_/C GC-01-94-5-11

identical
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 11, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

3._GU_171_/C RUQ_195

68.8 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

4._GU_171_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 2 > FP
 Dapeng Zhang, 2016

5._GU_171_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 7
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

6._GU_171_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 9
 Dapeng Zhang, 2016

7._GU_171_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 12
 Dapeng Zhang, 2016

8._GU_171_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 14
 Dapeng Zhang, 2016

9._GU_171_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 1 > FP
 Dapeng Zhang, 2016

10._GU_171_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 10 > F
 Dapeng Zhang, 2016

11._GU_171_/C GC-01-094-5-11

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

12._GU_171_/C GC-01-094-5-11

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

13._GU_171_/C GC-01-094-5-11

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

14._GU_171_/C GC-01-094-5-11

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

15._GU_171_/C GC-01-094-5-11

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

16._GU_171_/C GC-01-094-5-11

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

17._GU_171_/C GC-01-094-5-11

46.2 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

18._GU_171_/C RUQ_195

45.9 %
37 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._GU_171_/C RUQ_195

44.1 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1383 20TcSNP1414
21TcSNP1439 22TcSNP144 23TcSNP1442 24TcSNP1458 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP28 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998