SNP Profiles of GU-154C   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCACAACCAAGGGGCCAAGGGGAAGGAA
1._GU_154_/C
____________GG__AA__________
2._GU_154_/C
__________CCGG__AA__________
3._GU_154_/C
__________CCGG__AA__________
4._GU_154_/C
__________CCGG__AA__________
5._GU_154_/C
__________CCGG__AA__________
6._GU_154_/C
__________CCGG__AA__________
7._GU_154_/C
__________CCGG__AA__________
8._GU_154_/C
__________CCGG__AA__________
9._GU_154_/C
__________CCGG__AA__________
10._GU_154_/C
__________CCGG__AA__________
11._GU_154_/C
__________CCGG__AA__________
12._GU_154_/C
__________CCGG__AA__________
13._GU_154_/C
__________CCGG__AA__________
14._GU_154_/C
__________CCGG__AA__________
15._GC-01-078-4-14
CCACAACCTTCCGGGGAACCGGTTCCTT
16._GC-01-078-4-14
CCACAACCTTCCGGGGAACCGGTTCCTT
17._GC-01-078-4-14
CCACAACCTTCCGGGGAACCGGTTCCTT
18._GC-01-078-4-14
CCACAACCTTCCGGGGAACCGGTTCCTT
19._GC-01-078-4-14
CCACAACCTTCCGGGGAACCGGTTCCTT
20._GC-01-078-4-14
CCACAACCTTCCGGGGAACCGGTTCCTT
21._GC-01-078-4-14
CCACAACCTTCCGGGGAACCGGTTCCTT
22._GC-01-078-4-14
CCACAACCTTCCGGGGAACCGGTTCCTT
23._GC-01-078-4-14
CCACAACCTTCCGGGGAACCGGTTCCTT
24._GC-01-078-4-14
CCACAACCTTCCGGGGAACCGGTTCCTT
25._GC-01-078-4-14
CCACAACCTTCCGGGGAACCGGTTCCTT
26._GC-01-078-4-14
CCACAACCTTCCGGGGAACCGGTTCCTT
27._GC-01-078-4-14
CCACAACCTT__GGGGAACCGGTTCCTT
28._GC-01-078-4-14
CCACAACCTTCCGGGGAACCGGTTCCTT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAAAAGGAAGGAAGGCGGGAAAAGG
1._GU_154_/C
__TTTT____TT__AACCCGGGTTTTCC
2._GU_154_/C
__TTTT____TT__AACCCGGGTTTTCC
3._GU_154_/C
__TTTT____TT__AACCCGGGTTTTCC
4._GU_154_/C
__TTTT____TT__AACCCGGGTTTTCC
5._GU_154_/C
__TTTT____TT__AACCCGGGTTTTCC
6._GU_154_/C
__TTTT____TT__AACCCGGGTTTTCC
7._GU_154_/C
__TTTT____TT__AACCCGGGTTTTCC
8._GU_154_/C
__TTTT____TT__AACCCGGGTTTTCC
9._GU_154_/C
__TTTT____TT__AACCCGGGTTTTCC
10._GU_154_/C
__TTTT____TT__AACCCGGGTTTTCC
11._GU_154_/C
__TTTT____TT__AACCCGGGTTTTCC
12._GU_154_/C
__TTTT____TT__AACCCGGGTTTTCC
13._GU_154_/C
__TTTT____TT__AACCCGGGTTTTCC
14._GU_154_/C
__TTTT____TT__AACCCGGGTTTTCC
15._GC-01-078-4-14
TTTTTTTTGGTTCCAACCCGGGTTTTCC
16._GC-01-078-4-14
TTTTTTTTGGTTCCAACCCGGGTTTTCC
17._GC-01-078-4-14
TTTTTTTTGGTTCCAACCCGGGTTTTCC
18._GC-01-078-4-14
TTTTTTTTGGTTCCAACCCGGGTTTTCC
19._GC-01-078-4-14
TTTTTTTTGGTTCCAACCCGGGTTTTCC
20._GC-01-078-4-14
TTTTTTTTGGTTCCAACCCGGGTTTTCC
21._GC-01-078-4-14
TTTTTTTTGGTTCCAACCCGGGTTTTCC
22._GC-01-078-4-14
TTTTTTTTGGTTCCAACCCGGGTTTTCC
23._GC-01-078-4-14
TTTTTTTTGGTTCCAACCCGGGTTTTCC
24._GC-01-078-4-14
TTTTTTTTGGTTCCAACCCGGGTTTTCC
25._GC-01-078-4-14
TTTTTTTTGGTTCCAACCCGGGTTTTCC
26._GC-01-078-4-14
TTTTTTTTGGTTCCAACCCGGGTTTTCC
27._GC-01-078-4-14
TTTTTTTTGGTTCCAACCCGGGTTTTCC
28._GC-01-078-4-14
TTTTTTTTGGTTCCAACCCGGGTTTTCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTGGAAGGGGGGGGGGCCTTATGGGGAA
1._GU_154_/C
____AACCGG__CCGG____AT____AA
2._GU_154_/C
____AACCGG__CCGG____AT____AA
3._GU_154_/C
____AACCGG__CCGG____AT____AA
4._GU_154_/C
____AACCGG__CCGG____AT____AA
5._GU_154_/C
____AACCGG__CCGG____AT____AA
6._GU_154_/C
____AACCGG__CCGG____AT____AA
7._GU_154_/C
____AACCGG__CCGG____AT____AA
8._GU_154_/C
____AACCGG__CCGG____AT____AA
9._GU_154_/C
____AACCGG__CCGG____AT____AA
10._GU_154_/C
____AACCGG__CCGG____AT____AA
11._GU_154_/C
____AACCGG__CCGG____AT____AA
12._GU_154_/C
____AACCGG__CCGG____AT____AA
13._GU_154_/C
______CCGG__CCGG____AT____AA
14._GU_154_/C
____AACCGG__CCGG____AT______
15._GC-01-078-4-14
AAGGAACCGGGGCCGGGGAAATGGGGAA
16._GC-01-078-4-14
AAGGAACCGGGGCCGGGGAAATGGGGAA
17._GC-01-078-4-14
AAGGAACCGGGGCCGGGGAAATGGGGAA
18._GC-01-078-4-14
AAGGAACCGGGGCCGGGGAAATGGGGAA
19._GC-01-078-4-14
AAGGAACCGGGGCCGGGGAAATGGGGAA
20._GC-01-078-4-14
AAGGAACCGGGGCCGGGGAAATGGGGAA
21._GC-01-078-4-14
AAGGAACCGGGGCCGGGGAAATGGGGAA
22._GC-01-078-4-14
AAGGAACCGGGGCCGGGGAAATGGGGAA
23._GC-01-078-4-14
AAGGAACCGGGGCCGGGGAAATGGGGAA
24._GC-01-078-4-14
AAGGAACCGGGGCCGGGGAAATGGGGAA
25._GC-01-078-4-14
AAGGAACCGGGGCCGGGGAAATGGGG__
26._GC-01-078-4-14
AAGG__CCGGGGCCGGGGAAATGGGGAA
27._GC-01-078-4-14
AAGGAACCGGGGCCGGGGAAATGGGGAA
28._GC-01-078-4-14
AAGGAACCGGGGCCGGGGAAATGGGGAA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AGGGGGGGTTGGAACCAAGGCCGGCCAC
1._GU_154_/C
______GG________AA__GG__CCAC
2._GU_154_/C
______GG________AA__GG__CCAC
3._GU_154_/C
______GG________AA__GG__CCAC
4._GU_154_/C
______GG________AA__GG__CCAC
5._GU_154_/C
______GG________AA__GG__CCAC
6._GU_154_/C
______GG________AA__GG__CCAC
7._GU_154_/C
______GG________AA__GG__CCAC
8._GU_154_/C
______GG________AA__GG__CCAC
9._GU_154_/C
______GG________AA__GG__CCAC
10._GU_154_/C
______GG________AA__GG__CCAC
11._GU_154_/C
______GG________AA__GG__CCAC
12._GU_154_/C
______GG________AA__GG__CCAC
13._GU_154_/C
______GG________AA__GG__CCAC
14._GU_154_/C
______GG________AA__GG__CCAC
15._GC-01-078-4-14
CTGGGGGGTTCC__CCAAGGGGGGCCAC
16._GC-01-078-4-14
CTGGGGGGTTCC__CCAAGGGGGGCCAC
17._GC-01-078-4-14
CTGGGGGGTTCC__CCAAGGGGGGCCAC
18._GC-01-078-4-14
CTGGGGGGTTCC__CCAAGGGGGGCCAC
19._GC-01-078-4-14
CTGGGGGGTTCC__CCAAGGGGGGCCAC
20._GC-01-078-4-14
CTGGGGGGTTCC__CCAAGGGGGGCCAC
21._GC-01-078-4-14
CTGGGGGGTTCC__CCAAGGGGGGCCAC
22._GC-01-078-4-14
CTGGGGGGTTCC__CCAAGGGGGGCCAC
23._GC-01-078-4-14
CTGGGGGGTTCC__CCAAGGGGGGCCAC
24._GC-01-078-4-14
CTGGGGGGTTCC__CCAAGGGGGGCCAC
25._GC-01-078-4-14
CTGGGGGGTTCC__CCAAGGGGGGCCAC
26._GC-01-078-4-14
CTGGGGGGTTCC__CCAAGGGGGGCCAC
27._GC-01-078-4-14
CTGGGGGGTTCC__CCAAGGGGGGCCAC
28._GC-01-078-4-14
CTGGGGGGTTCC__CCAAGGGG__CCAC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGGGGGGGAACCAAAACCAAAAAACCGG
1._GU_154_/C
____CC____GG________________
2._GU_154_/C
____CC____GG________________
3._GU_154_/C
____CC____GG________________
4._GU_154_/C
____CC____GG________________
5._GU_154_/C
____CC____GG________________
6._GU_154_/C
____CC____GG________________
7._GU_154_/C
____CC____GG________________
8._GU_154_/C
____CC____GG________________
9._GU_154_/C
____CC____GG________________
10._GU_154_/C
____CC____GG________________
11._GU_154_/C
____CC____GG________________
12._GU_154_/C
____CC____GG________________
13._GU_154_/C
____CC____GG________________
14._GU_154_/C
____CC____GG________________
15._GC-01-078-4-14
CCCCCCAAAAGGAATTGGTTTTAAGG__
16._GC-01-078-4-14
CCCCCCAAAAGGAATTGGTTTTAAGG__
17._GC-01-078-4-14
CCCCCCAAAAGGAATTGGTTTTAAGG__
18._GC-01-078-4-14
CCCCCCAAAAGGAATTGGTTTTAAGG__
19._GC-01-078-4-14
CCCCCCAAAAGGAATTGGTTTTAAGG__
20._GC-01-078-4-14
CCCCCCAAAAGGAATTGGTTTTAAGG__
21._GC-01-078-4-14
CCCCCCAAAAGGAATTGGTTTTAAGG__
22._GC-01-078-4-14
CCCCCCAAAAGGAATTGGTTTTAAGG__
23._GC-01-078-4-14
CCCCCCAAAAGGAATTGGTTTTAAGG__
24._GC-01-078-4-14
CCCCCCAAAAGGAATTGGTTTTAAGG__
25._GC-01-078-4-14
CCCCCCAAAAGGAATTGGTTTTAAGG__
26._GC-01-078-4-14
CCCCCCAAAAGGAATTGGTTTTAAGG__
27._GC-01-078-4-14
CCCCCCAA__GGAATTGGTTTTAAGG__
28._GC-01-078-4-14
CCCCCCAA__GGAATTGGTTTTAAGG__
 71 72 73 74 75 76 77 78 79 80 81    
_Input profile
CCGGGGGGCCGGGGGGAAGGAGX_XX_XX_X
1._GU_154_/C
GGCC______CCGG__AACCAGX_XX_XX_X
2._GU_154_/C
GGCC______CCGG__AACCAGX_XX_XX_X
3._GU_154_/C
GGCC______CCGG__AACCAGX_XX_XX_X
4._GU_154_/C
GGCC______CCGG__AACCAGX_XX_XX_X
5._GU_154_/C
GGCC______CCGG__AACCAGX_XX_XX_X
6._GU_154_/C
GGCC______CCGG__AACCAGX_XX_XX_X
7._GU_154_/C
GGCC______CCGG__AACCAGX_XX_XX_X
8._GU_154_/C
GGCC______CCGG__AACCAGX_XX_XX_X
9._GU_154_/C
GGCC______CCGG__AACCAGX_XX_XX_X
10._GU_154_/C
GGCC______CCGG__AACCAGX_XX_XX_X
11._GU_154_/C
GGCC______CCGG__AACCAGX_XX_XX_X
12._GU_154_/C
GGCC______CCGG__AACCAGX_XX_XX_X
13._GU_154_/C
GGCC______CCGG__AACCAGX_XX_XX_X
14._GU_154_/C
GGCC______CCGG__AACCAGX_XX_XX_X
15._GC-01-078-4-14
GGCCCCGGCCCCGGCCAACCAGX_XX_XX_X
16._GC-01-078-4-14
GGCCCCGGCCCCGGCCAACCAGX_XX_XX_X
17._GC-01-078-4-14
GGCCCCGGCCCCGGCCAACCAGX_XX_XX_X
18._GC-01-078-4-14
GGCCCCGGCCCCGGCCAACCAGX_XX_XX_X
19._GC-01-078-4-14
GGCCCCGGCCCCGGCCAACCAGX_XX_XX_X
20._GC-01-078-4-14
GGCCCCGGCCCCGGCCAACCAGX_XX_XX_X
21._GC-01-078-4-14
GGCCCCGGCCCCGGCCAACCAGX_XX_XX_X
22._GC-01-078-4-14
GGCCCCGGCCCCGGCCAACCAGX_XX_XX_X
23._GC-01-078-4-14
GGCCCCGGCCCCGGCCAACCAGX_XX_XX_X
24._GC-01-078-4-14
GGCCCCGGCCCCGGCCAACCAGX_XX_XX_X
25._GC-01-078-4-14
GGCCCCGGCCCCGGCCAACCAGX_XX_XX_X
26._GC-01-078-4-14
GGCCCCGGCCCCGGCCAACCAGX_XX_XX_X
27._GC-01-078-4-14
GGCCCCGG__CCGGCCAACCAGX_XX_XX_X
28._GC-01-078-4-14
GGCCCCGGCCCCGGCCAACCAGX_XX_XX_X

Input profile: GU_154_/C GC-01-78-4-14

 
 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 14, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._GU_154_/C

51.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 7
 Dapeng Zhang, 2016

2._GU_154_/C

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 15 > F
 Dapeng Zhang, 2016

3._GU_154_/C

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 2
 Dapeng Zhang, 2016

4._GU_154_/C

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 3
 Dapeng Zhang, 2016

5._GU_154_/C

50 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1414 4
 Dapeng Zhang, 2016

6._GU_154_/C

50 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1414 5
 Dapeng Zhang, 2016

7._GU_154_/C

50 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1414 9
 Dapeng Zhang, 2016

8._GU_154_/C

50 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1414 13
 Dapeng Zhang, 2016

9._GU_154_/C

50 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1414 14
 Dapeng Zhang, 2016

10._GU_154_/C

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 16
 Dapeng Zhang, 2016

11._GU_154_/C

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 10 > F
 Dapeng Zhang, 2016

12._GU_154_/C

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 12 > F
 Dapeng Zhang, 2016

13._GU_154_/C

48.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 8
 Dapeng Zhang, 2016

14._GU_154_/C

48.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 1 > FP
 Dapeng Zhang, 2016

15._GU_154_/C GC-01-078-4-14

48.1 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

16._GU_154_/C GC-01-078-4-14

48.1 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

17._GU_154_/C GC-01-078-4-14

48.1 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

18._GU_154_/C GC-01-078-4-14

48.1 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

19._GU_154_/C GC-01-078-4-14

48.1 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP3
 Mars, 2018

20._GU_154_/C GC-01-078-4-14

48.1 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

21._GU_154_/C GC-01-078-4-14

48.1 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

22._GU_154_/C GC-01-078-4-14

48.1 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

23._GU_154_/C GC-01-078-4-14

48.1 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

24._GU_154_/C GC-01-078-4-14

48.1 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

25._GU_154_/C GC-01-078-4-14

47.4 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

26._GU_154_/C GC-01-078-4-14

47.4 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

27._GU_154_/C GC-01-078-4-14

47.4 %
76 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

28._GU_154_/C GC-01-078-4-14

46.8 %
77 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1383 20TcSNP1414
21TcSNP1439 22TcSNP144 23TcSNP1442 24TcSNP1458 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP28 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998