SNP Profiles of GU 147 /H View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AA	GG	CC	AA	GG	GG	CC	AA	GG	GG	AA	GG	AA
1._RUQ_222	CC	AA	AA	CC	AA	GG	GG	CC	AA	GG	GG	AA	GG	AA
2._GU_147_/H	_	_	_	_	_	CC	GG	_	AA	_	_	_	_	_
3._GU_147_/H	_	_	_	_	_	CC	GG	_	AA	_	_	_	_	_
4._GU_147_/H	_	_	_	_	_	CC	GG	_	AA	_	_	_	_	_
5._GU_147_/H	_	_	_	_	_	CC	GG	_	AA	_	_	_	_	_
6._GU_147_/H	_	_	_	_	_	CC	GG	_	AA	_	_	_	_	_
7._GU_147_/H	_	_	_	_	_	CC	GG	_	AA	_	_	_	_	_
8._GU_147_/H	_	_	_	_	_	CC	GG	_	AA	_	_	_	_	_
9._GU_147_/H	_	_	_	_	_	CC	GG	_	AA	_	_	_	_	_
10._GU_147_/H	_	_	_	_	_	CC	GG	_	AA	_	_	_	_	_
11._RUQ_222	_	_	_	_	_	CC	GG	_	AA	_	_	_	_	_
12._RUQ_222	_	_	_	_	_	CC	_	GG	_	_	GG	_	_	_
13._GC-01-080-4-16	CC	AA	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
14._GC-01-080-4-16	CC	AA	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
15._GC-01-080-4-16	CC	AA	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
16._GC-01-080-4-16	CC	AA	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
17._GC-01-080-4-16	CC	AA	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
18._GC-01-080-4-16	CC	AA	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
19._GC-01-080-4-16	CC	AA	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
20._GC-01-080-4-16	CC	AA	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
21._GC-01-080-4-16	CC	AA	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	AA	AA	GG	AA	GG	AA	GG	GG	GG	AA	AA	GG
1._RUQ_222	AA	AA	AA	AA	GG	AA	GG	AA	GG	CC	AG	AA	AA	GG
2._GU_147_/H	_	TT	TT	_	_	TT	_	AA	CC	CC	GG	TT	TT	CC
3._GU_147_/H	_	TT	TT	_	_	TT	_	AA	CC	CC	GG	TT	TT	CC
4._GU_147_/H	_	TT	TT	_	_	TT	_	AA	CC	CC	GG	TT	TT	CC
5._GU_147_/H	_	TT	TT	_	_	TT	_	AA	CC	CC	GG	TT	TT	CC
6._GU_147_/H	_	TT	TT	_	_	TT	_	AA	CC	CC	GG	TT	TT	CC
7._GU_147_/H	_	TT	TT	_	_	TT	_	AA	CC	CC	GG	TT	TT	CC
8._GU_147_/H	_	TT	TT	_	_	TT	_	_	CC	CC	GG	TT	TT	CC
9._GU_147_/H	_	TT	TT	_	_	TT	_	AA	CC	CC	GG	TT	TT	CC
10._GU_147_/H	_	TT	TT	_	_	TT	_	AA	CC	CC	GG	TT	TT	CC
11._RUQ_222	_	TT	TT	_	_	TT	_	AA	CC	CC	GG	TT	TT	CC
12._RUQ_222	_	TT	_	TT	_	_	CC	AA	CC	CC	GG	TT	TT	_
13._GC-01-080-4-16	TT	TT	TT	TT	GG	TT	CC	AA	CC	CC	GG	TT	TT	CC
14._GC-01-080-4-16	TT	TT	TT	TT	GG	TT	CC	AA	CC	CC	GG	TT	TT	CC
15._GC-01-080-4-16	TT	TT	TT	TT	GG	TT	CC	AA	CC	CC	GG	TT	TT	CC
16._GC-01-080-4-16	TT	TT	TT	TT	GG	TT	CC	AA	CC	CC	GG	TT	TT	CC
17._GC-01-080-4-16	TT	TT	TT	TT	GG	TT	CC	AA	CC	CC	GG	TT	TT	CC
18._GC-01-080-4-16	TT	TT	TT	TT	GG	TT	CC	AA	CC	CC	GG	TT	TT	CC
19._GC-01-080-4-16	TT	TT	TT	TT	GG	TT	CC	AA	CC	CC	GG	TT	TT	CC
20._GC-01-080-4-16	TT	TT	TT	TT	GG	TT	CC	AA	CC	CC	GG	TT	TT	CC
21._GC-01-080-4-16	TT	TT	TT	TT	GG	TT	CC	_	CC	CC	GG	TT	TT	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	TT	GG	AA	GG	GG	GG	GG	GG	TT	AT	GG	GG	AA	AG
1._RUQ_222	TT	GG	AA	GG	GG	GG	GG	GG	TT	AT	GG	GG	AA	AA
2._GU_147_/H	_	_	AA	CC	GG	_	CC	GG	_	AT	_	_	AA	_
3._GU_147_/H	_	_	AA	CC	GG	_	CC	GG	_	AT	_	_	AA	_
4._GU_147_/H	_	_	AA	CC	GG	_	CC	GG	_	AT	_	_	AA	_
5._GU_147_/H	_	_	AA	CC	GG	_	CC	GG	_	AT	_	_	AA	_
6._GU_147_/H	_	_	AA	CC	GG	_	CC	GG	_	AT	_	_	AA	_
7._GU_147_/H	_	_	AA	CC	GG	_	CC	GG	_	AT	_	_	AA	_
8._GU_147_/H	_	_	AA	CC	GG	_	CC	GG	_	AT	_	_	AA	_
9._GU_147_/H	_	_	AA	CC	GG	_	CC	GG	_	AT	_	_	AA	_
10._GU_147_/H	_	_	AA	CC	GG	_	CC	GG	_	AT	_	_	AA	_
11._RUQ_222	_	_	AA	CC	GG	_	CC	GG	_	AT	_	_	AA	_
12._RUQ_222	_	GG	AA	CC	GG	_	CC	_	_	_	GG	GG	AA	_
13._GC-01-080-4-16	AA	GG	AA	CC	GG	GG	CC	GG	AA	AT	GG	GG	AA	CT
14._GC-01-080-4-16	AA	GG	AA	CC	GG	GG	CC	GG	AA	AT	GG	GG	AA	CT
15._GC-01-080-4-16	AA	GG	AA	CC	GG	GG	CC	GG	AA	AT	GG	GG	AA	CT
16._GC-01-080-4-16	AA	GG	AA	CC	GG	GG	CC	GG	AA	AT	GG	GG	AA	CT
17._GC-01-080-4-16	AA	GG	AA	CC	GG	GG	CC	GG	AA	AT	GG	GG	AA	CT
18._GC-01-080-4-16	AA	GG	AA	CC	GG	GG	CC	GG	AA	AT	GG	GG	AA	CT
19._GC-01-080-4-16	AA	GG	AA	CC	GG	GG	CC	GG	AA	AT	GG	GG	AA	CT
20._GC-01-080-4-16	AA	GG	AA	CC	GG	GG	CC	GG	AA	AT	GG	GG	AA	CT
21._GC-01-080-4-16	AA	GG	AA	CC	GG	GG	CC	GG	AA	AT	GG	GG	AA	CT

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	GG	GG	GG	TT	GG	AA	CC	AA	GG	CC	GG	CC	AA	GG
1._RUQ_222	GG	GG	GG	TT	GG	AA	CC	AA	GG	CC	GG	CC	CC	GG
2._GU_147_/H	_	_	GG	_	_	_	_	AA	_	GG	_	CC	AA	_
3._GU_147_/H	_	_	GG	_	_	_	_	AA	_	GG	_	CC	AA	_
4._GU_147_/H	_	_	GG	_	_	_	_	AA	_	GG	_	CC	AA	_
5._GU_147_/H	_	_	GG	_	_	_	_	AA	_	GG	_	CC	AA	_
6._GU_147_/H	_	_	GG	_	_	_	_	AA	_	GG	_	CC	AA	_
7._GU_147_/H	_	_	GG	_	_	_	_	AA	_	GG	_	CC	AA	_
8._GU_147_/H	_	_	GG	_	_	_	_	AA	_	GG	_	CC	AA	_
9._GU_147_/H	_	_	GG	_	_	_	_	AA	_	GG	_	CC	AA	_
10._GU_147_/H	_	_	GG	_	_	_	_	AA	_	GG	_	CC	AA	_
11._RUQ_222	_	_	GG	_	_	_	_	AA	_	GG	_	CC	AA	_
12._RUQ_222	_	_	_	_	CC	_	_	AA	_	GG	_	CC	AA	_
13._GC-01-080-4-16	GG	GG	GG	TT	CC	_	CC	AA	GG	GG	GG	CC	AA	CC
14._GC-01-080-4-16	GG	GG	GG	TT	CC	_	CC	AA	GG	GG	GG	CC	AA	CC
15._GC-01-080-4-16	GG	GG	GG	TT	CC	_	CC	AA	GG	GG	GG	CC	AA	CC
16._GC-01-080-4-16	GG	GG	GG	TT	CC	_	CC	AA	GG	GG	GG	CC	AA	CC
17._GC-01-080-4-16	GG	GG	GG	TT	CC	_	CC	AA	GG	GG	GG	CC	AA	CC
18._GC-01-080-4-16	GG	GG	GG	TT	CC	_	CC	AA	GG	GG	GG	CC	AA	CC
19._GC-01-080-4-16	GG	GG	GG	TT	CC	_	CC	AA	GG	GG	GG	CC	AA	CC
20._GC-01-080-4-16	GG	GG	GG	TT	CC	_	CC	AA	GG	GG	GG	CC	AA	CC
21._GC-01-080-4-16	GG	GG	GG	TT	CC	_	CC	AA	GG	GG	GG	CC	AA	CC

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	GG	AG	GG	AA	CC	AA	AA	CC	AA	AA	AA	CC	GG	CC
1._RUQ_222	GG	GG	AG	AA	CC	AA	AA	AC	AA	AA	AA	CC	GG	CC
2._GU_147_/H	_	CT	_	_	GG	_	_	_	_	_	_	_	_	GG
3._GU_147_/H	_	CT	_	_	GG	_	_	_	_	_	_	_	_	GG
4._GU_147_/H	_	CT	_	_	GG	_	_	_	_	_	_	_	_	GG
5._GU_147_/H	_	CT	_	_	GG	_	_	_	_	_	_	_	_	GG
6._GU_147_/H	_	CT	_	_	GG	_	_	_	_	_	_	_	_	GG
7._GU_147_/H	_	CT	_	_	GG	_	_	_	_	_	_	_	_	GG
8._GU_147_/H	_	CT	_	_	GG	_	_	_	_	_	_	_	_	GG
9._GU_147_/H	_	CT	_	_	GG	_	_	_	_	_	_	_	_	GG
10._GU_147_/H	_	CT	_	_	GG	_	_	_	_	_	_	_	_	GG
11._RUQ_222	_	CT	_	_	GG	_	_	_	_	_	_	_	_	GG
12._RUQ_222	CC	CT	_	_	GG	AA	TT	_	_	TT	AA	_	_	GG
13._GC-01-080-4-16	CC	CT	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	_	GG
14._GC-01-080-4-16	CC	CT	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	_	GG
15._GC-01-080-4-16	CC	CT	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	_	GG
16._GC-01-080-4-16	CC	CT	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	_	GG
17._GC-01-080-4-16	CC	CT	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	_	GG
18._GC-01-080-4-16	CC	CT	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	_	GG
19._GC-01-080-4-16	CC	CT	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	_	GG
20._GC-01-080-4-16	CC	CT	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	_	GG
21._GC-01-080-4-16	CC	CT	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	_	GG

	71	72	73	74	75	76	77	78	79	80
_Input profile	GG	GG	GG	CC	GG	GG	GG	AA	GG	GG	X_X	X_X	X_X	X_X
1._RUQ_222	GG	GG	GG	CC	GG	GG	GG	AA	AG	AG	X_X	X_X	X_X	X_X
2._GU_147_/H	CC	_	_	_	CC	GG	_	AA	CC	GG	X_X	X_X	X_X	X_X
3._GU_147_/H	CC	_	_	_	CC	GG	_	AA	CC	GG	X_X	X_X	X_X	X_X
4._GU_147_/H	CC	_	_	_	CC	GG	_	AA	CC	GG	X_X	X_X	X_X	X_X
5._GU_147_/H	CC	_	_	_	CC	GG	_	AA	CC	GG	X_X	X_X	X_X	X_X
6._GU_147_/H	CC	_	_	_	CC	GG	_	AA	CC	GG	X_X	X_X	X_X	X_X
7._GU_147_/H	CC	_	_	_	CC	GG	_	AA	CC	GG	X_X	X_X	X_X	X_X
8._GU_147_/H	CC	_	_	_	CC	GG	_	AA	CC	GG	X_X	X_X	X_X	X_X
9._GU_147_/H	CC	_	_	_	CC	GG	_	AA	CC	GG	X_X	X_X	X_X	X_X
10._GU_147_/H	CC	_	_	_	CC	GG	_	AA	CC	GG	X_X	X_X	X_X	X_X
11._RUQ_222	CC	_	_	_	CC	GG	_	AA	CC	GG	X_X	X_X	X_X	X_X
12._RUQ_222	CC	_	-	CC	_	_	_	_	_	GG	X_X	X_X	X_X	X_X
13._GC-01-080-4-16	CC	CC	GG	CC	CC	GG	CC	AA	CC	GG	X_X	X_X	X_X	X_X
14._GC-01-080-4-16	CC	CC	GG	CC	CC	GG	CC	AA	CC	GG	X_X	X_X	X_X	X_X
15._GC-01-080-4-16	CC	CC	GG	CC	CC	GG	CC	AA	CC	GG	X_X	X_X	X_X	X_X
16._GC-01-080-4-16	CC	CC	GG	CC	CC	GG	CC	AA	CC	GG	X_X	X_X	X_X	X_X
17._GC-01-080-4-16	CC	CC	GG	CC	CC	GG	CC	AA	CC	GG	X_X	X_X	X_X	X_X
18._GC-01-080-4-16	CC	CC	GG	CC	CC	GG	CC	AA	CC	GG	X_X	X_X	X_X	X_X
19._GC-01-080-4-16	CC	CC	GG	CC	CC	GG	CC	AA	CC	GG	X_X	X_X	X_X	X_X
20._GC-01-080-4-16	CC	CC	GG	CC	CC	GG	CC	AA	CC	GG	X_X	X_X	X_X	X_X
21._GC-01-080-4-16	CC	CC	GG	CC	CC	GG	CC	AA	CC	GG	X_X	X_X	X_X	X_X

Input profile: GU_147_/H GC-01-80-4-16

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 4, Rep: 16, Tree: 2

Notes: MCCS_Structure_refs_above_0.9membership

1._GU_147_/H RUQ_222

90.6 %
80 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

2._GU_147_/H

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1416 5 > FP

Dapeng Zhang, 2016

3._GU_147_/H

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1416 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

4._GU_147_/H

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1416 7

Dapeng Zhang, 2016

5._GU_147_/H

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1416 12

Dapeng Zhang, 2016

6._GU_147_/H

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1416 13

Dapeng Zhang, 2016

7._GU_147_/H

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1416 16

Dapeng Zhang, 2016

8._GU_147_/H

45.5 %
33 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1416 1 > FP

Dapeng Zhang, 2016

9._GU_147_/H

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1416 14 > F

Dapeng Zhang, 2016

10._GU_147_/H

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1416 15 > F

Dapeng Zhang, 2016

11._GU_147_/H RUQ_222

47.1 %
34 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

12._GU_147_/H RUQ_222

43.2 %
37 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

13._GU_147_/H GC-01-080-4-16

47.4 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16

14._GU_147_/H GC-01-080-4-16

47.4 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 15

Notes: 15 > FP4

15._GU_147_/H GC-01-080-4-16

47.4 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14 > FP3

16._GU_147_/H GC-01-080-4-16

47.4 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

17._GU_147_/H GC-01-080-4-16

47.4 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

18._GU_147_/H GC-01-080-4-16

47.4 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

19._GU_147_/H GC-01-080-4-16

47.4 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP2

20._GU_147_/H GC-01-080-4-16

47.4 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

21._GU_147_/H GC-01-080-4-16

46.8 %
77 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

Key to SNP Markers

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1383	20	TcSNP1414
21	TcSNP1439	22	TcSNP144	23	TcSNP1442	24	TcSNP1458	25	TcSNP1484
26	TcSNP150	27	TcSNP151	28	TcSNP1520	29	TcSNP154	30	TcSNP174
31	TcSNP193	32	TcSNP226	33	TcSNP230	34	TcSNP240	35	TcSNP242
36	TcSNP25	37	TcSNP316	38	TcSNP32	39	TcSNP329	40	TcSNP364
41	TcSNP372	42	TcSNP413	43	TcSNP418	44	TcSNP42	45	TcSNP429
46	TcSNP430	47	TcSNP448	48	TcSNP497	49	TcSNP521	50	TcSNP529
51	TcSNP547	52	TcSNP560	53	TcSNP561	54	TcSNP577	55	TcSNP591
56	TcSNP60	57	TcSNP602	58	TcSNP619	59	TcSNP653	60	TcSNP689
61	TcSNP723	62	TcSNP731	63	TcSNP75	64	TcSNP751	65	TcSNP776
66	TcSNP799	67	TcSNP823	68	TcSNP836	69	TcSNP860	70	TcSNP872
71	TcSNP891	72	TcSNP894	73	TcSNP899	74	TcSNP90	75	TcSNP917
76	TcSNP929	77	TcSNP944	78	TcSNP953	79	TcSNP994	80	TcSNP998