SNP Profiles of GU 136 /H   View Data

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 1234567891011121314
_Input profile
CCAAGGCCAAGGGGCCAAGGGGAAGGAA
1._GU_136_/H
_____CCGG_AA_____
2._GU_136_/H
_____CCGG_AA_____
3._GU_136_/H
_____CCGG_AA_____
4._GU_136_/H
_____CCGG_AA_____
5._GU_136_/H
_____CCGG_AA_____
6._GU_136_/H
_____CCGG_AA_____
7._GU_136_/H
_____CCGG_AA_____
8._GU_136_/H
_____CCGG_AA_____
9._GU_136_/H
_____CCGG_AA_____
10._GU_136_/H
_____CCGG_AA_____
11._GU_136_/H
_____CCGG_AA_____
12._GU_136_/H
_____CCGG_AA_____
13._GU_136_/H
_____CCGG_AA_____
14._GU_136_/H
_____CCGG_AA_____
15._GU_136_/H
_____CCGG_AA_____
16._RUQ_221
_____CCGG_AA_____
17._RUQ_221
_____CC_GG__GG___
18._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
19._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
20._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
21._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
22._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
23._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
24._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
25._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
26._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
27._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
28._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
29._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
30._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
31._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
32._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
 1516171819202122232425262728
_Input profile
AAAAAAAAACGGAAGGAAGGCCGGAAAA
1._GU_136_/H
__TT___TT_AACCGGGGTTTT
2._GU_136_/H
_TTTT___TT_AACCGGGG_TT
3._GU_136_/H
_TTTT___TT_AACCGGGGTTTT
4._GU_136_/H
_TTTT___TT_AACCGGGGTTTT
5._GU_136_/H
_TTTT___TT_AACCGGGGTTTT
6._GU_136_/H
_TTTT___TT_AACCGGGGTTTT
7._GU_136_/H
_TTTT___TT_AACCGGGGTTTT
8._GU_136_/H
_TTTT___TT_AACCGGGGTTTT
9._GU_136_/H
_TTTT___TT_AACCGGGGTTTT
10._GU_136_/H
_TTTT___TT_AACCGGGGTTTT
11._GU_136_/H
_TTTT___TT_AACCGGGGTTTT
12._GU_136_/H
_TTTT___TT_AACCGGGGTTTT
13._GU_136_/H
_TTTT___TT_AACCGGGGTTTT
14._GU_136_/H
_TTTT___TT_AACCGGGGTTTT
15._GU_136_/H
_TTTT___TT_AACCGGGGTTTT
16._RUQ_221
_TTTT_CC_TT_AACCGGGGTTTT
17._RUQ_221
_TT_TT___CCAACCGGGGTTTT
18._GC-03-019-2-08
TTTTTTTT_GGTTCCAACCGGGG_TT
19._GC-03-019-2-08
TT_TTTT_GGTTCCAACCGGGGTTTT
20._GC-03-019-2-08
TTTTTTTT_GGTTCCAACCGGGGTTTT
21._GC-03-019-2-08
TTTTTTTT_GGTTCCAACCGGGGTTTT
22._GC-03-019-2-08
TTTTTTTT_GGTTCCAACCGGGGTTTT
23._GC-03-019-2-08
TTTTTTTT_GGTTCCAACCGGGGTTTT
24._GC-03-019-2-08
TTTTTTTT_GGTTCCAACCGGGGTTTT
25._GC-03-019-2-08
TTTTTTTT_GGTTCCAACCGGGGTTTT
26._GC-03-019-2-08
TTTTTTTT_GGTTCCAACCGGGGTTTT
27._GC-03-019-2-08
TTTTTTTT_GGTTCCAACCGGGGTTTT
28._GC-03-019-2-08
TTTTTTTT_GGTTCCAACCGGGGTTTT
29._GC-03-019-2-08
TTTTTTTT_GGTTCCAACCGGGGTTTT
30._GC-03-019-2-08
TTTTTTTT_GGTTCCAACCGGGGTTTT
31._GC-03-019-2-08
TTTTTTTT_GGTTCCAACCGGGGTTTT
32._GC-03-019-2-08
TTTTTTTT_GGTTCCAACCGGGGTTTT
 2930313233343536373839404142
_Input profile
GGTTGGAAGGGGGGGGGGTTATGGGGAA
1._GU_136_/H
CC__AACCGG_CCGG_AT__AA
2._GU_136_/H
CC__AACCGG_CCGG_AT__AA
3._GU_136_/H
CC__AACCGG_CCGG_AT__AA
4._GU_136_/H
CC__AACCGG_CCGG_AT__AA
5._GU_136_/H
CC__AACCGG_CCGG_AT__AA
6._GU_136_/H
CC__AACCGG_CCGG_AT__AA
7._GU_136_/H
CC__AACCGG_CCGG_AT__AA
8._GU_136_/H
CC__AACCGG_CCGG_AT__AA
9._GU_136_/H
CC__AACCGG_CCGG_AT__AA
10._GU_136_/H
CC__AACCGG_CCGG_AT__AA
11._GU_136_/H
CC__AACCGG_CCGG_AT__AA
12._GU_136_/H
CC__AACCGG_CCGG_AT__AA
13._GU_136_/H
CC__AACCGG_CCGG_AT__AA
14._GU_136_/H
CC__AACCGG_CCGG_AT__AA
15._GU_136_/H
CC__AACCGG_CCGG_AT__AA
16._RUQ_221
CC__AACCGG_CCGG_AT__AA
17._RUQ_221
__GGAACCGG_CC___GGGGAA
18._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
19._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
20._GC-03-019-2-08
CC_GGAACCGGGGCCGGAAATGGGGAA
21._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
22._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
23._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
24._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
25._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
26._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
27._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
28._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
29._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
30._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
31._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
32._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
 4344454647484950515253545556
_Input profile
AAGGGGGGTTGGAACCAAGGCCGGCCCC
1._GU_136_/H
___GG____AA_GG_CCCC
2._GU_136_/H
___GG____AA_GG_CCCC
3._GU_136_/H
___GG____AA_GG_CCCC
4._GU_136_/H
___GG____AA_GG_CCCC
5._GU_136_/H
___GG____AA_GG_CCCC
6._GU_136_/H
___GG____AA_GG_CCCC
7._GU_136_/H
________AA_GG_CCCC
8._GU_136_/H
___GG____AA_GG_CCCC
9._GU_136_/H
___GG____AA_GG_CCCC
10._GU_136_/H
___GG____AA_GG_CCCC
11._GU_136_/H
___GG____AA_GG_CCCC
12._GU_136_/H
___GG____AA_GG_CCCC
13._GU_136_/H
___GG____AA_GG_CCCC
14._GU_136_/H
___GG____AA_GG_CCCC
15._GU_136_/H
___GG____AA_GG_CCCC
16._RUQ_221
___GG____AA_GG_CCCC
17._RUQ_221
_____CC__AA_GG_CCCC
18._GC-03-019-2-08
TTGGGGGGTTCC_CCAAGGGGGGCCCC
19._GC-03-019-2-08
TTGGGGGGTTCC_CCAAGGGGGGCCCC
20._GC-03-019-2-08
TTGGGGGGTTCC_CCAAGGGGGGCCCC
21._GC-03-019-2-08
TTGGGGGGTTCC_CCAAGGGGGGCCCC
22._GC-03-019-2-08
TTGGGGGGTTCC_CCAAGGGGGGCCCC
23._GC-03-019-2-08
TTGGGGGGTTCC_CCAAGGGGGGCCCC
24._GC-03-019-2-08
TTGGGGGGTTCC_CCAAGGGGGGCCCC
25._GC-03-019-2-08
TTGGGGGGTTCC_CCAAGGGGGGCCCC
26._GC-03-019-2-08
TTGGGGGGTTCC_CCAAGGGGGGCCCC
27._GC-03-019-2-08
TTGGGGGGTTCC_CCAAGGGGGGCCCC
28._GC-03-019-2-08
TTGGGG_TTCC_CCAAGGGGGGCCCC
29._GC-03-019-2-08
TTGG_GGTTCC_CCAAGGGGGGCCCC
30._GC-03-019-2-08
TTGGGGGGTTCC_CCAAGGGGGGCCCC
31._GC-03-019-2-08
TTGGGGGGTTCC_CCAAGGGGGGCCCC
32._GC-03-019-2-08
TTGGGGGGTTCC_CCAAGGGGGGCCCC
 5758596061626364656667686970
_Input profile
GGGGGGGGAACCAAAACCAAAAAACCGG
1._GU_136_/H
__CC__GG________
2._GU_136_/H
__CC__GG________
3._GU_136_/H
__CC__GG________
4._GU_136_/H
__CC__GG________
5._GU_136_/H
__CC__GG________
6._GU_136_/H
__CC__GG________
7._GU_136_/H
__CC__GG________
8._GU_136_/H
__CC__GG________
9._GU_136_/H
__CC__GG________
10._GU_136_/H
__CC__GG________
11._GU_136_/H
__CC__GG________
12._GU_136_/H
__CC__GG________
13._GU_136_/H
__CC__GG________
14._GU_136_/H
__CC__GG________
15._GU_136_/H
__CC__GG________
16._RUQ_221
__CC__GG________
17._RUQ_221
_CCCC__GGAATT__TTAA__
18._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG_
19._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG_
20._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG_
21._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG_
22._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG_
23._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG_
24._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG_
25._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG_
26._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG_
27._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG_
28._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG_
29._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG_
30._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG_
31._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG_
32._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG_
 7172737475767778798081   
_Input profile
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
1._GU_136_/H
GGCC___CCGG_AACCAAX_XX_XX_X
2._GU_136_/H
GGCC___CCGG_AACCAAX_XX_XX_X
3._GU_136_/H
GGCC___CCGG_AACCAAX_XX_XX_X
4._GU_136_/H
GGCC___CCGG_AACCAAX_XX_XX_X
5._GU_136_/H
GGCC___CCGG_AACCAAX_XX_XX_X
6._GU_136_/H
GGCC___CCGG_AACCAAX_XX_XX_X
7._GU_136_/H
GGCC___CCGG_AACCAAX_XX_XX_X
8._GU_136_/H
GGCC___CCGG_AACCAAX_XX_XX_X
9._GU_136_/H
GGCC___CCGG_AACCAAX_XX_XX_X
10._GU_136_/H
GGCC___CCGG_AACCAAX_XX_XX_X
11._GU_136_/H
GGCC___CCGG_AACCAAX_XX_XX_X
12._GU_136_/H
GGCC___CCGG_AACCAAX_XX_XX_X
13._GU_136_/H
GGCC___CCGG_AACCAAX_XX_XX_X
14._GU_136_/H
GGCC___CCGG_AACCAAX_XX_XX_X
15._GU_136_/H
GGCC___CCGG_AACCAAX_XX_XX_X
16._RUQ_221
GGCC___CCGG_AACCAAX_XX_XX_X
17._RUQ_221
GGCC_-CC_____AAX_XX_XX_X
18._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
19._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
20._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
21._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
22._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
23._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
24._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
25._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
26._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
27._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
28._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
29._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
30._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
31._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
32._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X

Input profile: GU_136_/H GC-03-19-2-8

 
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Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 8, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._GU_136_/H

48.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 9 > FP
 Dapeng Zhang, 2016

2._GU_136_/H

48.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 12
 Dapeng Zhang, 2016

3._GU_136_/H

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

4._GU_136_/H

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 2
 Dapeng Zhang, 2016

5._GU_136_/H

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 3
 Dapeng Zhang, 2016

6._GU_136_/H

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 4
 Dapeng Zhang, 2016

7._GU_136_/H

45.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 5
 Dapeng Zhang, 2016

8._GU_136_/H

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 6
 Dapeng Zhang, 2016

9._GU_136_/H

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 8
 Dapeng Zhang, 2016

10._GU_136_/H

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 11
 Dapeng Zhang, 2016

11._GU_136_/H

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 13
 Dapeng Zhang, 2016

12._GU_136_/H

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 16
 Dapeng Zhang, 2016

13._GU_136_/H

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 10 > F
 Dapeng Zhang, 2016

14._GU_136_/H

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 14 > F
 Dapeng Zhang, 2016

15._GU_136_/H

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 7 > FP
 Dapeng Zhang, 2016

16._GU_136_/H RUQ_221

45.7 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

17._GU_136_/H RUQ_221

43.2 %
37 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

18._GU_136_/H GC-03-019-2-08

48.1 %
77 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

19._GU_136_/H GC-03-019-2-08

48.1 %
77 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

20._GU_136_/H GC-03-019-2-08

48.1 %
77 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

21._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

22._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

23._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

24._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

25._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

26._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

27._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

28._GU_136_/H GC-03-019-2-08

46.8 %
77 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

29._GU_136_/H GC-03-019-2-08

46.8 %
77 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

30._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

31._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

32._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998