SNP Profiles of GU 133 /C   View Data

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 Key

 1234567891011121314
_Input profile
CCACGGCCAAGGGGCCAAGGGGAAGGAA
1._MITC-000670
CCACGGCCAAGGGGCCAAGGGGAAGGAA
2._RUQ_190
____________GG______________
3._RUQ_190
__________CC________GG______
4._GU_133_/C
__________CCGG__AA__________
5._GU_133_/C
__________CCGG__AA__________
6._GU_133_/C
__________CCGG__AA__________
7._GU_133_/C
__________CCGG__AA__________
8._GU_133_/C
__________CCGG__AA__________
9._GU_133_/C
__________CCGG__AA__________
10._GU_133_/C
__________CCGG__AA__________
11._GU_133_/C
__________CCGG__AA__________
12._GU_133_/C
__________CCGG__AA__________
13._RUQ_190
__________CCGG__AA__________
14._GC-01-116-6-13
CCACGGCCTTCCGGGGAACCGGTTCCTT
15._GC-08-164-4-07
CCACGGCCTTCCGGGGAACCGGTTCCTT
16._GC-08-164-4-07
CCACGGCCTTCCGGGGAACCGGTTCCTT
17._GC-01-116-6-13
CCACGGCCTTCCGGGGAACCGGTTCCTT
18._GC-01-116-6-13
CCACGGCCTTCCGGGGAACCGGTTCCTT
19._GC-01-116-6-13
CCACGGCCTTCCGGGGAACCGGTTCCTT
20._GC-08-164-4-07
CCACGGCCTTCCGGGGAACCGGTTCCTT
21._GC-08-164-4-07
CCACGGCCTTCCGGGGAACCGGTTCCTT
22._GC-08-164-4-07
CCACGGCCTTCCGGGGAACCGGTTCCTT
23._GU_133_/C
__________CCGG__AA__________
24._GU_133_/C
__________CCGG__AA__________
25._GC-01-116-6-13
CCACGGCCTTCCGGGGAACCGGTTCCTT
26._GC-08-164-4-07
CCACGGCCTTCCGGGGAACCGGTTCCTT
27._RUQ_190
__________CC__GG____GG______
 1516171819202122232425262728
_Input profile
AAAAAAAAGGAAGGAAGGCGGGAAAAGG
1._MITC-000670
AAAAAAAAGGAAGGAAGGCGGGAAAAGG
2._RUQ_190
__TT__________AA__CG________
3._RUQ_190
____________CCAA__CG____TT__
4._GU_133_/C
____TT________AACCCGGGTTTTCC
5._GU_133_/C
____TT____TT__AACCCGGGTTTTCC
6._GU_133_/C
__TTTT____TT__AACCCGGGTTTTCC
7._GU_133_/C
__TTTT____TT__AACCCGGGTTTTCC
8._GU_133_/C
__TTTT____TT__AACCCGGGTTTTCC
9._GU_133_/C
__TTTT____TT__AACCCGGGTTTTCC
10._GU_133_/C
__TTTT____TT__AACCCGGGTTTTCC
11._GU_133_/C
__TTTT____TT__AACCCGGGTTTTCC
12._GU_133_/C
__TTTT____TT__AACCCGGGTTTTCC
13._RUQ_190
__TTTT____TT__AACCCGGGGTTTCC
14._GC-01-116-6-13
TT__TTTT____CCAACCCGGGTTTTCC
15._GC-08-164-4-07
TT__TTTTGGTTCCAACCCGGGTTTTCC
16._GC-08-164-4-07
TTTTTTTTGGTTCCAACCCGGGTTTTCC
17._GC-01-116-6-13
TTTTTTTTGGTTCCAACCCGGGTTTTCC
18._GC-01-116-6-13
TTTTTTTTGGTTCCAACCCGGGTTTTCC
19._GC-01-116-6-13
TTTTTTTTGGTTCCAACCCGGGTTTTCC
20._GC-08-164-4-07
TTTTTTTTGGTTCCAACCCGGGTTTTCC
21._GC-08-164-4-07
TTTTTTTTGGTTCCAACCCGGGTTTTCC
22._GC-08-164-4-07
TTTTTTTTGGTTCCAACCCGGGTTTTCC
23._GU_133_/C
__TTTT____TT__AACCCGGGTTTTCC
24._GU_133_/C
__TTTT____TT__AACCCGGGTTTTCC
25._GC-01-116-6-13
TTTTTTTTGGTTCCAACCCGGGTTTTCC
26._GC-08-164-4-07
TTTTTTTTGGTTCCAACCCGGGTTTTCC
27._RUQ_190
__TT__TT____CCAACCCGGGTTTT__
 2930313233343536373839404142
_Input profile
TTGGAAGGGGGGGGGGTTATGGGGAAAA
1._MITC-000670
TTGGAAGGGGGGGGGGTTATGGGGAAAA
2._RUQ_190
________GG__________GG______
3._RUQ_190
__GGAAGGGG____________GGAATT
4._GU_133_/C
____AACC____CCGG__AT____AA__
5._GU_133_/C
____AACCGG__CCGG__AT____AA__
6._GU_133_/C
____AACCGG__CCGG__AT____AA__
7._GU_133_/C
____AACCGG__CCGG__AT____AA__
8._GU_133_/C
____AACCGG__CCGG__AT____AA__
9._GU_133_/C
____AACCGG__CCGG__AT____AA__
10._GU_133_/C
____AACCGG__CCGG__AT____AA__
11._GU_133_/C
____AACCGG__CCGG__AT____AA__
12._GU_133_/C
____AACCGG__CCGG__AT____AA__
13._RUQ_190
____AACCGG__CCGG__AT____AA__
14._GC-01-116-6-13
AAGGAACC__GGCCGGAAATGGGGAA__
15._GC-08-164-4-07
AAGGAACCGGGGCCGGAAATGGGGAATT
16._GC-08-164-4-07
AAGGAACCGGGGCCGGAAATGGGGAATT
17._GC-01-116-6-13
AAGGAACCGGGGCCGGAAATGGGGAATT
18._GC-01-116-6-13
AAGGAACCGGGGCCGGAAATGGGGAATT
19._GC-01-116-6-13
AAGGAACCGGGGCCGGAAATGGGGAATT
20._GC-08-164-4-07
AAGGAACCGGGGCCGGAAATGGGGAATT
21._GC-08-164-4-07
AAGGAACCGGGGCCGGAAATGGGGAATT
22._GC-08-164-4-07
AAGGAACCGGGGCCGGAAATGGGGAATT
23._GU_133_/C
____AACC____CCGG__AT____AA__
24._GU_133_/C
______CCGG__CCGG__AT____AA__
25._GC-01-116-6-13
AAGGAACC__GGCCGGAAATGGGGAATT
26._GC-08-164-4-07
AAGG__CCGGGGCCGGAAATGGGGAATT
27._RUQ_190
__GGAACCGG__CC______GGGGAA__
 4344454647484950515253545556
_Input profile
GGGGGGTTGGAACCAAGGCCGGCCACGG
1._MITC-000670
GGGGGGTTGGAACCAAGGCCGGCCACGG
2._RUQ_190
______________AA______CCAC__
3._RUQ_190
________CC____________CCAC__
4._GU_133_/C
____GG________AA__GG__CCAC__
5._GU_133_/C
____GG________AA__GG__CCAC__
6._GU_133_/C
____GG________AA__GG__CCAC__
7._GU_133_/C
____GG________AA__GG__CCAC__
8._GU_133_/C
____GG________AA__GG__CCAC__
9._GU_133_/C
____GG________AA__GG__CCAC__
10._GU_133_/C
____GG________AA__GG__CCAC__
11._GU_133_/C
____GG________AA__GG__CCAC__
12._GU_133_/C
____GG________AA__GG__CCAC__
13._RUQ_190
____GG________AA__GG__CCAC__
14._GC-01-116-6-13
GGGGGGTTCC__CCAAGGGGGGCCACCC
15._GC-08-164-4-07
GGGGGGTTCC__CCAAGGGGGGCCACCC
16._GC-08-164-4-07
GGGGGGTTCC__CCAAGGGGGGCCACCC
17._GC-01-116-6-13
GGGGGGTTCC__CCAAGGGGGGCCACCC
18._GC-01-116-6-13
GGGGGGTTCC__CCAAGGGGGGCCACCC
19._GC-01-116-6-13
GGGGGGTTCC__CCAAGGGGGGCCACCC
20._GC-08-164-4-07
GGGGGGTTCC__CCAAGGGGGGCCACCC
21._GC-08-164-4-07
GGGGGGTTCC__CCAAGGGGGGCCACCC
22._GC-08-164-4-07
GGGGGGTTCC__CCAAGGGGGGCCACCC
23._GU_133_/C
____GG________AA__GG__CCAC__
24._GU_133_/C
____GG________AA__GG__CCAC__
25._GC-01-116-6-13
GGGGGGTTCC__CCAAGGGGGGCCACCC
26._GC-08-164-4-07
GGGGGGTTCC__CCAAGGGGGGCCACCC
27._RUQ_190
________CC____AA__GG__CCAC__
 5758596061626364656667686970
_Input profile
GGGGGGAACCAAAACCAAAAAACCGGCC
1._MITC-000670
GGGGGGAACCAAAACCAAAAAACCGGCC
2._RUQ_190
CC______GGAA________AACC__GG
3._RUQ_190
CC____________GG________GGCC
4._GU_133_/C
__CC____GG________________GG
5._GU_133_/C
__CC____GG________________GG
6._GU_133_/C
__CC____GG________________GG
7._GU_133_/C
__CC____GG________________GG
8._GU_133_/C
__CC____GG________________GG
9._GU_133_/C
__CC____GG________________GG
10._GU_133_/C
__CC____GG________________GG
11._GU_133_/C
__CC____GG________________GG
12._GU_133_/C
__CC____GG________________GG
13._RUQ_190
__CC____GG________________GG
14._GC-01-116-6-13
CCCCAAAAGGAATT__TTTTAAGGAAGG
15._GC-08-164-4-07
CCCCAAAAGGAATTGGTTTTAAGG__GG
16._GC-08-164-4-07
CCCCAAAAGGAATTGGTTTTAAGG__GG
17._GC-01-116-6-13
CCCCAAAAGGAATTGGTTTTAAGG__GG
18._GC-01-116-6-13
CCCCAAAAGGAATTGGTTTTAAGG__GG
19._GC-01-116-6-13
CCCCAAAAGGAATTGGTTTTAAGG__GG
20._GC-08-164-4-07
CCCCAAAAGGAATTGGTTTTAAGG__GG
21._GC-08-164-4-07
CCCCAAAAGGAATTGGTTTTAAGG__GG
22._GC-08-164-4-07
CCCCAAAAGGAATTGGTTTTAAGG__GG
23._GU_133_/C
__CC____GG________________GG
24._GU_133_/C
__CC____GG________________GG
25._GC-01-116-6-13
CCCCAAAAGGAATTGGTTTTAAGG__GG
26._GC-08-164-4-07
CCCCAAAAGGAATTGGTTTTAAGG__GG
27._RUQ_190
CCCC____GGAATT____TTAA____GG
 71727374757677787980    
_Input profile
GGGGGGCCGGGGGGAAGGGGX_XX_XX_XX_X
1._MITC-000670
GGGGGGCCGGGGGGAAGGGGX_XX_XX_XX_X
2._RUQ_190
____GG____________GGX_XX_XX_XX_X
3._RUQ_190
CC______________CC__X_XX_XX_XX_X
4._GU_133_/C
________CCGG__AACCGGX_XX_XX_XX_X
5._GU_133_/C
CC______CCGG__AACCGGX_XX_XX_XX_X
6._GU_133_/C
CC______CCGG__AACCGGX_XX_XX_XX_X
7._GU_133_/C
CC______CCGG__AACCGGX_XX_XX_XX_X
8._GU_133_/C
CC______CCGG__AACCGGX_XX_XX_XX_X
9._GU_133_/C
CC______CCGG__AACCGGX_XX_XX_XX_X
10._GU_133_/C
CC______CCGG__AACCGGX_XX_XX_XX_X
11._GU_133_/C
CC______CCGG__AACCGGX_XX_XX_XX_X
12._GU_133_/C
CC______CCGG__AACCGGX_XX_XX_XX_X
13._RUQ_190
CC______CCGG__AACCGGX_XX_XX_XX_X
14._GC-01-116-6-13
__CCGGCCCCGGCCAACCGGX_XX_XX_XX_X
15._GC-08-164-4-07
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
16._GC-08-164-4-07
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
17._GC-01-116-6-13
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
18._GC-01-116-6-13
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
19._GC-01-116-6-13
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
20._GC-08-164-4-07
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
21._GC-08-164-4-07
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
22._GC-08-164-4-07
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
23._GU_133_/C
CC______CCGG__AACCGGX_XX_XX_XX_X
24._GU_133_/C
CC______CCGG__AACCGGX_XX_XX_XX_X
25._GC-01-116-6-13
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
26._GC-08-164-4-07
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
27._RUQ_190
CC____CC__________GGX_XX_XX_XX_X

Input profile: GU_133_/C GC-01-116-6-13

 
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 13, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._GU_133_/C MITC-000670

identical
80 shared markers

USDA-SHRS, United States of America
 Mars, 2018

2._GU_133_/C RUQ_190

76.5 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

3._GU_133_/C RUQ_190

59.1 %
22 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

4._GU_133_/C

53.3 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 10 > F
 Dapeng Zhang, 2016

5._GU_133_/C

51.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 10
 Dapeng Zhang, 2016

6._GU_133_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 3 > FP
 Dapeng Zhang, 2016

7._GU_133_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

8._GU_133_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 9 > FP
 Dapeng Zhang, 2016

9._GU_133_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 1
 Dapeng Zhang, 2016

10._GU_133_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 2
 Dapeng Zhang, 2016

11._GU_133_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 8
 Dapeng Zhang, 2016

12._GU_133_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 11
 Dapeng Zhang, 2016

13._GU_133_/C RUQ_190

50 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

14._GU_133_/C GC-01-116-6-13

50 %
72 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP3
 Mars, 2018

15._GU_133_/C GC-08-164-4-07

49.4 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

16._GU_133_/C GC-08-164-4-07

48.7 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

17._GU_133_/C GC-01-116-6-13

48.7 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

18._GU_133_/C GC-01-116-6-13

48.7 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

19._GU_133_/C GC-01-116-6-13

48.7 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

20._GU_133_/C GC-08-164-4-07

48.7 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

21._GU_133_/C GC-08-164-4-07

48.7 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

22._GU_133_/C GC-08-164-4-07

48.7 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

23._GU_133_/C

48.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 1 > FP
 Dapeng Zhang, 2016

24._GU_133_/C

48.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 3
 Dapeng Zhang, 2016

25._GU_133_/C GC-01-116-6-13

48.1 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

26._GU_133_/C GC-08-164-4-07

48.1 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

27._GU_133_/C RUQ_190

47.2 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1383 20TcSNP1414
21TcSNP1439 22TcSNP144 23TcSNP1442 24TcSNP1458 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP316 38TcSNP32 39TcSNP329 40TcSNP364
41TcSNP372 42TcSNP413 43TcSNP418 44TcSNP42 45TcSNP429
46TcSNP430 47TcSNP448 48TcSNP497 49TcSNP521 50TcSNP529
51TcSNP547 52TcSNP560 53TcSNP561 54TcSNP577 55TcSNP591
56TcSNP60 57TcSNP602 58TcSNP619 59TcSNP653 60TcSNP689
61TcSNP723 62TcSNP731 63TcSNP75 64TcSNP751 65TcSNP776
66TcSNP799 67TcSNP823 68TcSNP836 69TcSNP860 70TcSNP872
71TcSNP891 72TcSNP894 73TcSNP899 74TcSNP90 75TcSNP917
76TcSNP929 77TcSNP944 78TcSNP953 79TcSNP994 80TcSNP998