SNP Profiles of GU-125C   View Data

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 Key

 1234567891011121314
_Input profile
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
1._RUQ_188
CCACAACCAAGGGGCCAAGGGGAAGGAA
2._GU_125_/C
_____CCGG_AA_____
3._GU_125_/C
_____CCGG_AA_____
4._GU_125_/C
_____CCGG_AA_____
5._GU_125_/C
_____CCGG_______
6._GU_125_/C
_____CCGG_AA_____
7._GU_125_/C
_____CCGG_AA_____
8._GU_125_/C
_____CCGG_AA_____
9._RUQ_188
_____CCGG_AA_____
10._RUQ_188
_____CCGG_AA_____
11._RUQ_188
_____CC_GG__GG___
12._GC-01-138-7-17
CCAAAGCCTTCCGGGGAACCGGTTCCTT
13._GC-01-138-7-17
CCAAAGCCTTCCGGGGAACCGGTTCCTT
14._GC-01-138-7-17
CCAAAGCCTTCCGGGGAACCGGTTCCTT
15._GC-01-138-7-17
CCAAAGCCTTCCGGGG_CCGGTTCCTT
16._GC-01-138-7-17
CCAAAGCCTTCCGGGGAACCGGTTCCTT
17._GC-01-138-7-17
CCAAAGCCTTCCGGGGAACCGGTTCCTT
 1516171819202122232425262728
_Input profile
AAAAAAAAGGAAGGAAGGGGGGAAAAGG
1._RUQ_188
AAAAAAAAGGAAGGAAGGCGGGAAAAGG
2._GU_125_/C
_TTTT__TT_AACCCCGGTTTTCC
3._GU_125_/C
_TTTT__TT_AACCCCGGTTTTCC
4._GU_125_/C
_TTTT__TT_AACCCCGGTTTTCC
5._GU_125_/C
_TTTT__TT_AACCCCGGTTTTCC
6._GU_125_/C
_TTTT__TT_AACCCCGGTTTTCC
7._GU_125_/C
_TTTT__TT_AACCCCGGTTTTCC
8._GU_125_/C
_TTTT__TT_AACCCCGGTTTTCC
9._RUQ_188
_TTTT__TT_AACCCGGGTTTTCC
10._RUQ_188
_TTTT__TT_AACCCGGGGTTTCC
11._RUQ_188
_TT_TT__CCAACCCGGGTTTT_
12._GC-01-138-7-17
TTTTTTTTGGTTCCAACCCCGGTTTTCC
13._GC-01-138-7-17
TTTTTTTTGGTTCCAACCCCGGTTTTCC
14._GC-01-138-7-17
TTTTTTTTGGTTCCAACCCCGGTTTTCC
15._GC-01-138-7-17
TTTTTTTTGGTTCCAACCCCGGTTTTCC
16._GC-01-138-7-17
TTTTTTTTGGTTCCAACCCCGGTTTTCC
17._GC-01-138-7-17
TTTTTTTTGGTTCCAACCCCGGTTTTCC
 2930313233343536373839404142
_Input profile
TTGGAAGGGGGGGGGGCCTTAAGGGGAA
1._RUQ_188
TTGGAAGGGGGGGGGGCCTTATGGGGAA
2._GU_125_/C
__AACCGG_CCGG__AA__AA
3._GU_125_/C
__AACCGG_CCGG__AA__AA
4._GU_125_/C
__AACCGG_CCGG__AA__AA
5._GU_125_/C
__AACCGG_CCGG__AA__AA
6._GU_125_/C
__AACCGG_CCGG__AA__AA
7._GU_125_/C
__AACCGG_CCGG__AA__AA
8._GU_125_/C
__AACCGG_CCGG__AA__AA
9._RUQ_188
__AACCGG_CCGG__AT__AA
10._RUQ_188
__AACCGG_CCGG__AT__AA
11._RUQ_188
_GGAACCGG_CC____GGGGAA
12._GC-01-138-7-17
AAGGAACCGGGGCCGGGGAAAAGGGGAA
13._GC-01-138-7-17
AAGGAACCGGGGCCGGGG_AAGGGGAA
14._GC-01-138-7-17
AAGGAACCGGGGCCGGGGAAAAGGGGAA
15._GC-01-138-7-17
AAGGAACCGGGGCCGGGGAAAAGGGGAA
16._GC-01-138-7-17
AAGGAACCGGGGCCGGGGAAAAGGGGAA
17._GC-01-138-7-17
AAGGAACCGGGGCCGGGGAAAAGGGGAA
 4344454647484950515253545556
_Input profile
AAGGGGGGTTGGAACCAAGGCCGGCCCC
1._RUQ_188
AGGGGGGGTTGGAACCAAGGCCGGCCAC
2._GU_125_/C
___GG____AA___CCCC
3._GU_125_/C
___GG____AA_GG_CCCC
4._GU_125_/C
___GG____AA_GG_CCCC
5._GU_125_/C
___GG____AA_GG_CCCC
6._GU_125_/C
___GG____AA_GG_CCCC
7._GU_125_/C
___GG____AA_GG_CCCC
8._GU_125_/C
___GG____AA_GG_CCCC
9._RUQ_188
___GG____AA_GG_CCAC
10._RUQ_188
___GG____AA_GG_CCAC
11._RUQ_188
_____CC__AA_GG_CCAC
12._GC-01-138-7-17
TTGGGGGGTTCC_CCAAGG_GGCCCC
13._GC-01-138-7-17
TTGGGGGGTTCC_CCAAGGGGGGCCCC
14._GC-01-138-7-17
TTGGGGGGTTCC_CCAAGGGGGGCCCC
15._GC-01-138-7-17
TTGGGGGGTTCC_CCAAGGGGGGCCCC
16._GC-01-138-7-17
TTGGGGGGTTCC_CCAAGGGGGGCCCC
17._GC-01-138-7-17
TTGGGGGGTTCC_CCAAGGGGGGCCCC
 5758596061626364656667686970
_Input profile
GGGGGGAAAACCAAAACCAAAAAACCGG
1._RUQ_188
GGGGGGGGAACCAAAACCAAAAAACCGG
2._GU_125_/C
__CC__GG________
3._GU_125_/C
__CC__GG________
4._GU_125_/C
__CC__GG________
5._GU_125_/C
__CC__GG________
6._GU_125_/C
__CC__GG________
7._GU_125_/C
__CC__GG________
8._GU_125_/C
__CC__GG________
9._RUQ_188
__CC__GG________
10._RUQ_188
__CC__GG________
11._RUQ_188
_CCCC__GGAATT__TTAA__
12._GC-01-138-7-17
CCCCCCAAAAGGAATTGGTTTTAAGG_
13._GC-01-138-7-17
CCCCCCAAAAGGAATTGGTTTTAAGG_
14._GC-01-138-7-17
CCCCCCAAAAGGAATTGGTTTTAAGG_
15._GC-01-138-7-17
CCCCCCAAAAGGAATTGGTTTTAAGG_
16._GC-01-138-7-17
CCCCCCAAAAGGAATTGGTTTTAAGG_
17._GC-01-138-7-17
CCCCCCAAAAGGAATTGGTTTTAAGG_
 7172737475767778798081   
_Input profile
CCGGGGGGCCGGGGGGAAGGGGX_XX_XX_X
1._RUQ_188
CCGGGGGGCCGGGGGGAAGGAGX_XX_XX_X
2._GU_125_/C
GGCC___CCGG_AACCGGX_XX_XX_X
3._GU_125_/C
GGCC___CCGG_AACCGGX_XX_XX_X
4._GU_125_/C
GGCC___CCGG_AACCGGX_XX_XX_X
5._GU_125_/C
GGCC___CCGG_AACCGGX_XX_XX_X
6._GU_125_/C
GGCC___CCGG_AACCGGX_XX_XX_X
7._GU_125_/C
GGCC___CCGG_AACCGGX_XX_XX_X
8._GU_125_/C
GGCC___CCGG_AACCGGX_XX_XX_X
9._RUQ_188
GGCC___CCGG_AACCAGX_XX_XX_X
10._RUQ_188
GGCC___CCGG_AACCAGX_XX_XX_X
11._RUQ_188
GGCC_-CC_____AGX_XX_XX_X
12._GC-01-138-7-17
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
13._GC-01-138-7-17
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
14._GC-01-138-7-17
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
15._GC-01-138-7-17
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
16._GC-01-138-7-17
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
17._GC-01-138-7-17
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X

Input profile: GU_125_/C GC-01-138-7-17

 
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 7, Rep: 17, Tree: 3
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._GU_125_/C RUQ_188

93.8 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._GU_125_/C

48.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 11
 Dapeng Zhang, 2016

3._GU_125_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 4 > FP
 Dapeng Zhang, 2016

4._GU_125_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 3
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

5._GU_125_/C

45.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 9
 Dapeng Zhang, 2016

6._GU_125_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 1 > FP
 Dapeng Zhang, 2016

7._GU_125_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 10 > F
 Dapeng Zhang, 2016

8._GU_125_/C

47.1 %
34 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: Q6_EXT_2 20
 Dapeng Zhang, 2016

9._GU_125_/C RUQ_188

44.1 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

10._GU_125_/C RUQ_188

44.1 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

11._GU_125_/C RUQ_188

41.9 %
37 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

12._GU_125_/C GC-01-138-7-17

48.7 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

13._GU_125_/C GC-01-138-7-17

48.7 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

14._GU_125_/C GC-01-138-7-17

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

15._GU_125_/C GC-01-138-7-17

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

16._GU_125_/C GC-01-138-7-17

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

17._GU_125_/C GC-01-138-7-17

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1383 20TcSNP1414
21TcSNP1439 22TcSNP144 23TcSNP1442 24TcSNP1458 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP28 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998