SNP Profiles of GU 125 /C View Data

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_Input profile	CC	AA	AG	CC	AA	GG	GG	CC	AA	GG	GG	AA	GG	AA
1._RUQ_188	CC	AC	AA	CC	AA	GG	GG	CC	AA	GG	GG	AA	GG	AA
2._RUQ_188	__	__	__	__	__	__	GG	__	__	__	__	__	__	__
3._GC-01-138-7-17	CC	AA	AG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
4._GC-01-138-7-17	CC	AA	AG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
5._GU_125_/C	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
6._GC-01-138-7-17	CC	AA	AG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
7._GC-01-138-7-17	CC	AA	AG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
8._GC-01-138-7-17	CC	AA	AG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
9._GC-01-138-7-17	CC	AA	AG	CC	TT	CC	GG	GG	__	CC	GG	TT	CC	TT
10._GU_125_/C	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
11._GU_125_/C	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
12._GU_125_/C	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
13._GU_125_/C	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
14._GU_125_/C	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
15._GU_125_/C	__	__	__	__	__	CC	GG	__	__	__	__	__	__	__
16._RUQ_188	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
17._RUQ_188	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
18._RUQ_188	__	__	__	__	__	CC	__	GG	__	__	GG	__	__	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	AA	AA	GG	AA	GG	AA	GG	GG	GG	AA	AA	GG
1._RUQ_188	AA	AA	AA	AA	GG	AA	GG	AA	GG	CG	GG	AA	AA	GG
2._RUQ_188	__	TT	__	__	__	__	__	AA	__	CG	__	__	__	__
3._GC-01-138-7-17	TT	TT	TT	TT	GG	TT	CC	AA	CC	CC	GG	TT	TT	CC
4._GC-01-138-7-17	TT	TT	TT	TT	GG	TT	CC	AA	CC	CC	GG	TT	TT	CC
5._GU_125_/C	__	TT	TT	__	__	TT	__	AA	CC	CC	GG	TT	TT	CC
6._GC-01-138-7-17	TT	TT	TT	TT	GG	TT	CC	AA	CC	CC	GG	TT	TT	CC
7._GC-01-138-7-17	TT	TT	TT	TT	GG	TT	CC	AA	CC	CC	GG	TT	TT	CC
8._GC-01-138-7-17	TT	TT	TT	TT	GG	TT	CC	AA	CC	CC	GG	TT	TT	CC
9._GC-01-138-7-17	TT	TT	TT	TT	GG	TT	CC	AA	CC	CC	GG	TT	TT	CC
10._GU_125_/C	__	TT	TT	__	__	TT	__	AA	CC	CC	GG	TT	TT	CC
11._GU_125_/C	__	TT	TT	__	__	TT	__	AA	CC	CC	GG	TT	TT	CC
12._GU_125_/C	__	TT	TT	__	__	TT	__	AA	CC	CC	GG	TT	TT	CC
13._GU_125_/C	__	TT	TT	__	__	TT	__	AA	CC	CC	GG	TT	TT	CC
14._GU_125_/C	__	TT	TT	__	__	TT	__	AA	CC	CC	GG	TT	TT	CC
15._GU_125_/C	__	TT	TT	__	__	TT	__	AA	CC	CC	GG	TT	TT	CC
16._RUQ_188	__	TT	TT	__	__	TT	__	AA	CC	CG	GG	GT	TT	CC
17._RUQ_188	__	TT	TT	__	__	TT	__	AA	CC	CG	GG	TT	TT	CC
18._RUQ_188	__	TT	__	TT	__	__	CC	AA	CC	CG	GG	TT	TT	__

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	TT	GG	AA	GG	GG	GG	GG	GG	CC	TT	AA	GG	GG	AA
1._RUQ_188	TT	GG	AA	GG	GG	GG	GG	GG	CC	TT	AT	GG	GG	AA
2._RUQ_188	__	__	__	__	GG	__	__	__	__	__	__	GG	__	__
3._GC-01-138-7-17	AA	GG	AA	CC	GG	GG	CC	GG	GG	AA	AA	GG	GG	AA
4._GC-01-138-7-17	AA	GG	AA	CC	GG	GG	CC	GG	GG	__	AA	GG	GG	AA
5._GU_125_/C	__	__	AA	CC	GG	__	CC	GG	__	__	AA	__	__	AA
6._GC-01-138-7-17	AA	GG	AA	CC	GG	GG	CC	GG	GG	AA	AA	GG	GG	AA
7._GC-01-138-7-17	AA	GG	AA	CC	GG	GG	CC	GG	GG	AA	AA	GG	GG	AA
8._GC-01-138-7-17	AA	GG	AA	CC	GG	GG	CC	GG	GG	AA	AA	GG	GG	AA
9._GC-01-138-7-17	AA	GG	AA	CC	GG	GG	CC	GG	GG	AA	AA	GG	GG	AA
10._GU_125_/C	__	__	AA	CC	GG	__	CC	GG	__	__	AA	__	__	AA
11._GU_125_/C	__	__	AA	CC	GG	__	CC	GG	__	__	AA	__	__	AA
12._GU_125_/C	__	__	AA	CC	GG	__	CC	GG	__	__	AA	__	__	AA
13._GU_125_/C	__	__	AA	CC	GG	__	CC	GG	__	__	AA	__	__	AA
14._GU_125_/C	__	__	AA	CC	GG	__	CC	GG	__	__	AA	__	__	AA
15._GU_125_/C	__	__	AA	CC	GG	__	CC	GG	__	__	AA	__	__	AA
16._RUQ_188	__	__	AA	CC	GG	__	CC	GG	__	__	AT	__	__	AA
17._RUQ_188	__	__	AA	CC	GG	__	CC	GG	__	__	AT	__	__	AA
18._RUQ_188	__	GG	AA	CC	GG	__	CC	__	__	__	__	GG	GG	AA

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AA	GG	GG	GG	TT	GG	AA	CC	AA	GG	CC	GG	CC	CC
1._RUQ_188	AG	GG	GG	GG	TT	GG	AA	CC	AA	GG	CC	GG	CC	AC
2._RUQ_188	__	__	__	__	__	__	__	__	AA	__	__	__	CC	AC
3._GC-01-138-7-17	TT	GG	GG	GG	TT	CC	__	CC	AA	GG	__	GG	CC	CC
4._GC-01-138-7-17	TT	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	GG	CC	CC
5._GU_125_/C	__	__	__	GG	__	__	__	__	AA	__	__	__	CC	CC
6._GC-01-138-7-17	TT	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	GG	CC	CC
7._GC-01-138-7-17	TT	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	GG	CC	CC
8._GC-01-138-7-17	TT	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	GG	CC	CC
9._GC-01-138-7-17	TT	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	GG	CC	CC
10._GU_125_/C	__	__	__	GG	__	__	__	__	AA	__	GG	__	CC	CC
11._GU_125_/C	__	__	__	GG	__	__	__	__	AA	__	GG	__	CC	CC
12._GU_125_/C	__	__	__	GG	__	__	__	__	AA	__	GG	__	CC	CC
13._GU_125_/C	__	__	__	GG	__	__	__	__	AA	__	GG	__	CC	CC
14._GU_125_/C	__	__	__	GG	__	__	__	__	AA	__	GG	__	CC	CC
15._GU_125_/C	__	__	__	GG	__	__	__	__	AA	__	GG	__	CC	CC
16._RUQ_188	__	__	__	GG	__	__	__	__	AA	__	GG	__	CC	AC
17._RUQ_188	__	__	__	GG	__	__	__	__	AA	__	GG	__	CC	AC
18._RUQ_188	__	__	__	__	__	CC	__	__	AA	__	GG	__	CC	AC

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	GG	GG	GG	AA	AA	CC	AA	AA	CC	AA	AA	AA	CC	GG
1._RUQ_188	GG	GG	GG	GG	AA	CC	AA	AA	CC	AA	AA	AA	CC	GG
2._RUQ_188	__	CC	__	__	__	GG	AA	__	__	__	__	AA	CT	__
3._GC-01-138-7-17	CC	CC	CC	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__
4._GC-01-138-7-17	CC	CC	CC	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__
5._GU_125_/C	__	__	CC	__	__	GG	__	__	__	__	__	__	__	__
6._GC-01-138-7-17	CC	CC	CC	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__
7._GC-01-138-7-17	CC	CC	CC	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__
8._GC-01-138-7-17	CC	CC	CC	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__
9._GC-01-138-7-17	CC	CC	CC	AA	AA	GG	AA	TT	GG	TT	TT	AA	GG	__
10._GU_125_/C	__	__	CC	__	__	GG	__	__	__	__	__	__	__	__
11._GU_125_/C	__	__	CC	__	__	GG	__	__	__	__	__	__	__	__
12._GU_125_/C	__	__	CC	__	__	GG	__	__	__	__	__	__	__	__
13._GU_125_/C	__	__	CC	__	__	GG	__	__	__	__	__	__	__	__
14._GU_125_/C	__	__	CC	__	__	GG	__	__	__	__	__	__	__	__
15._GU_125_/C	__	__	CC	__	__	GG	__	__	__	__	__	__	__	__
16._RUQ_188	__	__	CC	__	__	GG	__	__	__	__	__	__	__	__
17._RUQ_188	__	__	CC	__	__	GG	__	__	__	__	__	__	__	__
18._RUQ_188	__	CC	CC	__	__	GG	AA	TT	__	__	TT	AA	__	__

	71	72	73	74	75	76	77	78	79	80	81
_Input profile	CC	GG	GG	GG	CC	GG	GG	GG	AA	GG	GG	X_X	X_X	X_X
1._RUQ_188	CC	GG	GG	GG	CC	GG	GG	GG	AA	GG	AG	X_X	X_X	X_X
2._RUQ_188	GG	__	__	GG	__	__	__	__	__	__	AG	X_X	X_X	X_X
3._GC-01-138-7-17	GG	CC	CC	GG	CC	CC	GG	CC	AA	CC	GG	X_X	X_X	X_X
4._GC-01-138-7-17	GG	CC	CC	GG	CC	CC	GG	CC	AA	CC	GG	X_X	X_X	X_X
5._GU_125_/C	GG	CC	__	__	__	CC	GG	__	AA	CC	GG	X_X	X_X	X_X
6._GC-01-138-7-17	GG	CC	CC	GG	CC	CC	GG	CC	AA	CC	GG	X_X	X_X	X_X
7._GC-01-138-7-17	GG	CC	CC	GG	CC	CC	GG	CC	AA	CC	GG	X_X	X_X	X_X
8._GC-01-138-7-17	GG	CC	CC	GG	CC	CC	GG	CC	AA	CC	GG	X_X	X_X	X_X
9._GC-01-138-7-17	GG	CC	CC	GG	CC	CC	GG	CC	AA	CC	GG	X_X	X_X	X_X
10._GU_125_/C	GG	CC	__	__	__	CC	GG	__	AA	CC	GG	X_X	X_X	X_X
11._GU_125_/C	GG	CC	__	__	__	CC	GG	__	AA	CC	GG	X_X	X_X	X_X
12._GU_125_/C	GG	CC	__	__	__	CC	GG	__	AA	CC	GG	X_X	X_X	X_X
13._GU_125_/C	GG	CC	__	__	__	CC	GG	__	AA	CC	GG	X_X	X_X	X_X
14._GU_125_/C	GG	CC	__	__	__	CC	GG	__	AA	CC	GG	X_X	X_X	X_X
15._GU_125_/C	GG	CC	__	__	__	CC	GG	__	AA	CC	GG	X_X	X_X	X_X
16._RUQ_188	GG	CC	__	__	__	CC	GG	__	AA	CC	AG	X_X	X_X	X_X
17._RUQ_188	GG	CC	__	__	__	CC	GG	__	AA	CC	AG	X_X	X_X	X_X
18._RUQ_188	GG	CC	__	__	CC	__	__	__	__	__	AG	X_X	X_X	X_X

Input profile: GU_125_/C GC-01-138-7-17

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 7, Rep: 17, Tree: 3

Notes: MCCS_Structure_refs_above_0.9membership

1._GU_125_/C RUQ_188

94.4 %
81 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

2._GU_125_/C RUQ_188

64.7 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

GU
0.998

3._GU_125_/C GC-01-138-7-17

48.7 %
78 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

4._GU_125_/C GC-01-138-7-17

48.7 %
78 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

5._GU_125_/C

48.5 %
33 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1717 11

Dapeng Zhang, 2016

6._GU_125_/C GC-01-138-7-17

48.1 %
79 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10 > FP2

7._GU_125_/C GC-01-138-7-17

48.1 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

8._GU_125_/C GC-01-138-7-17

48.1 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

9._GU_125_/C GC-01-138-7-17

47.4 %
78 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

10._GU_125_/C

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1717 4 > FP

Dapeng Zhang, 2016

11._GU_125_/C

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1717 10 > F

Dapeng Zhang, 2016

12._GU_125_/C

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1717 1 > FP

Dapeng Zhang, 2016

13._GU_125_/C

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1717 3

Dapeng Zhang, 2016

14._GU_125_/C

47.1 %
34 shared markers

View View all Clone Any

Cocoa Research Institute of Ghana (CRIG), Ghana

Location: Q6_EXT_2 20

Dapeng Zhang, 2016

15._GU_125_/C

45.5 %
33 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1717 9

Dapeng Zhang, 2016

16._GU_125_/C RUQ_188

44.1 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

17._GU_125_/C RUQ_188

44.1 %
34 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

18._GU_125_/C RUQ_188

43.1 %
36 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1383	20	TcSNP1414
21	TcSNP1439	22	TcSNP144	23	TcSNP1442	24	TcSNP1458	25	TcSNP1484
26	TcSNP150	27	TcSNP151	28	TcSNP1520	29	TcSNP154	30	TcSNP174
31	TcSNP193	32	TcSNP226	33	TcSNP230	34	TcSNP240	35	TcSNP242
36	TcSNP25	37	TcSNP28	38	TcSNP316	39	TcSNP32	40	TcSNP329
41	TcSNP364	42	TcSNP372	43	TcSNP413	44	TcSNP418	45	TcSNP42
46	TcSNP429	47	TcSNP430	48	TcSNP448	49	TcSNP497	50	TcSNP521
51	TcSNP529	52	TcSNP547	53	TcSNP560	54	TcSNP561	55	TcSNP577
56	TcSNP591	57	TcSNP60	58	TcSNP602	59	TcSNP619	60	TcSNP653
61	TcSNP689	62	TcSNP723	63	TcSNP731	64	TcSNP75	65	TcSNP751
66	TcSNP776	67	TcSNP799	68	TcSNP823	69	TcSNP836	70	TcSNP860
71	TcSNP872	72	TcSNP891	73	TcSNP894	74	TcSNP899	75	TcSNP90
76	TcSNP917	77	TcSNP929	78	TcSNP944	79	TcSNP953	80	TcSNP994
81	TcSNP998