SNP Profiles of GU 123 /C   View Data

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 Key

 1234567891011121314
_Input profile
CCAAGGCCAAGGGGCCAAGGGGAAGGAA
1._GC-01-095-5-12
CCAAGGCCTTCCGGGGAACCGGTTCCTT
2._GC-01-095-5-12
CCAAGGCCTTCCGGGGAACCGGTTCCTT
3._GC-01-095-5-12
CCAAGGCCTTCCGGGGAACCGGTTCCTT
4._GC-01-095-5-12
CCAAGGCCTTCCGGGGAACCGGTTCCTT
5._GC-01-095-5-12
CCAAGGCCTTCCGGGGAACCGGTTCCTT
6._GC-01-095-5-12
CCAAGGCCTTCCGGGGAACCGGTTCCTT
7._GC-01-095-5-12
CCAAGGCCTTCCGGGGAACCGGTTCCTT
8._GC-01-095-5-12
CCAAGGCCTTCCGGGGAACCGGTTCC__
9._GU_123_/C
__________CCGG__AA__________
10._GU_123_/C
__________CCGG__AA__________
11._GU_123_/C
__________CCGG__AA__________
12._GU_123_/C
__________CCGG__AA__________
13._GU_123_/C
__________CCGG__AA__________
14._GU_123_/C
__________CCGG__AA__________
15._GU_123_/C
__________CCGG__AA__________
16._GU_123_/C
__________CCGG__AA__________
17._GU_123_/C
__________CCGG__AA__________
 1516171819202122232425262728
_Input profile
AAAAAAAACCGGAAGGAAGGCCGGAAAA
1._GC-01-095-5-12
__TTTTTT__GGTTCCAACCGGGGTTTT
2._GC-01-095-5-12
TTTTTTTT__GGTTCCAACCGGGGTTTT
3._GC-01-095-5-12
TTTTTTTT__GGTTCCAACCGGGGTTTT
4._GC-01-095-5-12
TTTTTTTT__GGTTCCAACCGGGGTTTT
5._GC-01-095-5-12
TTTTTTTT__GGTTCCAACCGGGGTTTT
6._GC-01-095-5-12
TTTTTTTT__GGTTCCAACCGGGGTTTT
7._GC-01-095-5-12
TTTTTTTT__GGTTCCAACCGGGGTTTT
8._GC-01-095-5-12
TTTTTTTT__GGTTCCAACCGGGGTTTT
9._GU_123_/C
__TTTT______TT__AACCGGGGTTTT
10._GU_123_/C
__TTTT______TT__AACCGGGGTTTT
11._GU_123_/C
__TTTT______TT__AACCGGGGTTTT
12._GU_123_/C
__TTTT______TT__AACCGGGGTTTT
13._GU_123_/C
__TTTT______TT__AACCGGGGTTTT
14._GU_123_/C
__TTTT______TT__AACCGGGGTTTT
15._GU_123_/C
__TTTT______TT__AACCGGGGTTTT
16._GU_123_/C
__TTTT______TT__AACCGGGGTTTT
17._GU_123_/C
__TTTT______TT__AACCGGGGTTTT
 2930313233343536373839404142
_Input profile
GGTTGGAAGGGGGGGGGGCCTTTTGGGG
1._GC-01-095-5-12
CCAAGGAACCGGGGCCGGGGAATTGGGG
2._GC-01-095-5-12
CCAAGGAACCGGGGCCGGGGAATTGGGG
3._GC-01-095-5-12
CCAAGGAACCGGGGCCGGGGAATTGGGG
4._GC-01-095-5-12
CCAAGGAACCGGGGCCGGGGAATTGGGG
5._GC-01-095-5-12
CCAAGGAACCGGGGCCGGGGAATTGGGG
6._GC-01-095-5-12
CCAAGGAACCGGGGCCGGGGAATTGGGG
7._GC-01-095-5-12
CCAAGGAACCGGGGCCGGGGAATTGGGG
8._GC-01-095-5-12
CCAAGGAACCGGGGCCGGGGAATTGGGG
9._GU_123_/C
CC____AACCGG__CCGG____TT____
10._GU_123_/C
CC____AACCGG__CCGG____TT____
11._GU_123_/C
CC____AACCGG__CCGG____TT____
12._GU_123_/C
CC____AACCGG__CCGG____TT____
13._GU_123_/C
CC____AACCGG__CCGG____TT____
14._GU_123_/C
CC____AACCGG__CCGG____TT____
15._GU_123_/C
CC____AACCGG__CCGG____TT____
16._GU_123_/C
CC____AACCGG__CCGG____TT____
17._GU_123_/C
CC____AACCGG__CCGG____TT____
 4344454647484950515253545556
_Input profile
AAGGGGGGGGTTGGAACCAAGGCCAGCC
1._GC-01-095-5-12
AACCGGGGGGTTCC__CCAAGGGGAGCC
2._GC-01-095-5-12
AACCGGGGGGTTCC__CCAAGGGGAGCC
3._GC-01-095-5-12
AACCGGGGGGTTCC__CCAAGGGGAGCC
4._GC-01-095-5-12
AACCGGGGGGTTCC__CCAAGGGGAGCC
5._GC-01-095-5-12
AACCGGGGGGTTCC__CCAAGGGGAGCC
6._GC-01-095-5-12
AACCGGGGGGTTCC__CCAAGGGGAGCC
7._GC-01-095-5-12
AACCGGGGGGTTCC__CCAAGGGGAGCC
8._GC-01-095-5-12
AACCGGGGGGTTCC__CCAAGGGGAGCC
9._GU_123_/C
AA______GG________AA__GG__CC
10._GU_123_/C
AA______GG________AA__GG__CC
11._GU_123_/C
AA______GG________AA__GG__CC
12._GU_123_/C
AA______GG________AA__GG__CC
13._GU_123_/C
AA______GG________AA__GG__CC
14._GU_123_/C
AA______GG________AA__GG__CC
15._GU_123_/C
AA______GG________AA__GG__CC
16._GU_123_/C
AA______GG________AA__GG__CC
17._GU_123_/C
AA______GG________AA__GG__CC
 5758596061626364656667686970
_Input profile
CCGGGGAAAAAACCAAAACCAAAAAACC
1._GC-01-095-5-12
CCCCCCTTAAAAGGAATTGGTTTTAAGG
2._GC-01-095-5-12
CCCCCCTTAAAAGGAATTGGTTTTAAGG
3._GC-01-095-5-12
CCCCCCTTAAAAGGAATTGGTTTTAAGG
4._GC-01-095-5-12
CCCCCCTTAAAAGGAATTGGTTTTAAGG
5._GC-01-095-5-12
CCCCCCTTAAAAGGAATTGGTTTTAAGG
6._GC-01-095-5-12
CCCCCCTTAAAAGGAATTGGTTTTAAGG
7._GC-01-095-5-12
CCCCCCTTAAAAGGAATTGGTTTTAAGG
8._GC-01-095-5-12
CCCCCCTTAAAAGGAATTGGTTTT__GG
9._GU_123_/C
CC____TT____GG______________
10._GU_123_/C
CC____TT____GG______________
11._GU_123_/C
CC____TT____GG______________
12._GU_123_/C
CC____TT____GG______________
13._GU_123_/C
CC____TT____GG______________
14._GU_123_/C
CC____TT____GG______________
15._GU_123_/C
CC____TT____GG______________
16._GU_123_/C
CC____TT____GG______________
17._GU_123_/C
CC____TT____GG______________
 717273747576777879808182  
_Input profile
GGCCGGGGGGCCGGGGGGAAAGAAX_XX_X
1._GC-01-095-5-12
__GGCCCCGGCCCCGGCCAACTAAX_XX_X
2._GC-01-095-5-12
__GGCCCCGGCCCCGGCCAACTAAX_XX_X
3._GC-01-095-5-12
__GGCCCCGGCCCCGGCCAACTAAX_XX_X
4._GC-01-095-5-12
__GGCCCCGGCCCCGGCCAACTAAX_XX_X
5._GC-01-095-5-12
__GGCCCCGGCCCCGGCCAACTAAX_XX_X
6._GC-01-095-5-12
__GGCCCCGGCCCCGGCCAACTAAX_XX_X
7._GC-01-095-5-12
__GGCCCCGGCCCCGGCCAACTAAX_XX_X
8._GC-01-095-5-12
__GGCCCCGGCCCCGGCCAACTAAX_XX_X
9._GU_123_/C
__GGCC______CCGG__AACTAAX_XX_X
10._GU_123_/C
__GGCC______CCGG__AACTAAX_XX_X
11._GU_123_/C
__GGCC______CCGG__AACTAAX_XX_X
12._GU_123_/C
__GGCC______CCGG__AACTAAX_XX_X
13._GU_123_/C
__GGCC______CCGG__AACTAAX_XX_X
14._GU_123_/C
__GGCC______CCGG__AACTAAX_XX_X
15._GU_123_/C
__GGCC______CCGG__AACTAAX_XX_X
16._GU_123_/C
__GGCC______CCGG__AACTAAX_XX_X
17._GU_123_/C
__GGCC______CCGG__AACTAAX_XX_X

Input profile: GU_123_/C GC-01-95-5-12

 
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 12, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._GU_123_/C GC-01-095-5-12

48.7 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

2._GU_123_/C GC-01-095-5-12

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

3._GU_123_/C GC-01-095-5-12

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

4._GU_123_/C GC-01-095-5-12

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

5._GU_123_/C GC-01-095-5-12

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

6._GU_123_/C GC-01-095-5-12

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._GU_123_/C GC-01-095-5-12

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._GU_123_/C GC-01-095-5-12

48.1 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP4
 Mars, 2018

9._GU_123_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1512 13 > FP4
 Dapeng Zhang, 2016

10._GU_123_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1512 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

11._GU_123_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1512 3
 Dapeng Zhang, 2016

12._GU_123_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1512 6
 Dapeng Zhang, 2016

13._GU_123_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1512 9
 Dapeng Zhang, 2016

14._GU_123_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1512 14
 Dapeng Zhang, 2016

15._GU_123_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1512 1 > FP
 Dapeng Zhang, 2016

16._GU_123_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1512 4 > FP3
 Dapeng Zhang, 2016

17._GU_123_/C

47.1 %
34 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: Q6_EXT_2 44
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998