SNP Profiles of GU 171/C View Data

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_Input profile	CC	CC	GG	CC	AA	GG	GG	CC	AA	GG	GG	AA	GG	AA
1._RUQ_195	CC	CC	GG	CC	AA	GG	GG	CC	AA	GG	GG	AA	GG	AA
2._GC-01-94-5-11	CC	CC	GG	CC	AA	GG	GG	CC	AA	GG	GG	AA	GG	AA
3._RUQ_195	__	__	__	__	__	__	GG	__	__	__	__	__	__	__
4._GC-01-094-5-11	CC	CC	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
5._GC-01-094-5-11	CC	CC	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
6._GC-01-094-5-11	CC	CC	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
7._GC-01-094-5-11	CC	CC	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
8._GC-01-094-5-11	CC	CC	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
9._GC-01-094-5-11	CC	CC	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
10._GU_171_/C	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
11._GU_171_/C	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
12._GU_171_/C	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
13._GU_171_/C	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
14._GU_171_/C	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
15._GU_171_/C	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
16._GU_171_/C	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
17._GC-01-094-5-11	CC	CC	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
18._RUQ_195	__	__	__	__	__	CC	__	GG	__	__	GG	__	__	__
19._RUQ_195	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	AA	AA	CC	GG	AA	GG	AA	GG	CC	AA	AA	AA
1._RUQ_195	AA	AA	AA	AA	CC	GG	AA	GG	AA	GG	CC	AA	AA	AA
2._GC-01-94-5-11	AA	AA	AA	AA	__	GG	AA	GG	AA	GG	CC	AA	AA	AA
3._RUQ_195	__	TT	__	__	__	__	__	__	AA	__	GG	__	__	__
4._GC-01-094-5-11	TT	TT	TT	TT	__	GG	TT	CC	AA	CC	GG	AA	TT	TT
5._GC-01-094-5-11	TT	TT	TT	TT	__	GG	TT	CC	AA	CC	GG	AA	TT	TT
6._GC-01-094-5-11	TT	TT	TT	TT	__	GG	TT	CC	AA	CC	GG	AA	TT	TT
7._GC-01-094-5-11	TT	TT	TT	TT	__	GG	TT	CC	AA	CC	GG	AA	TT	TT
8._GC-01-094-5-11	TT	TT	TT	TT	__	GG	TT	CC	AA	CC	GG	AA	TT	TT
9._GC-01-094-5-11	TT	TT	TT	TT	__	GG	TT	CC	AA	CC	GG	AA	TT	TT
10._GU_171_/C	__	TT	TT	__	__	__	TT	__	AA	CC	GG	AA	TT	TT
11._GU_171_/C	__	TT	TT	__	__	__	TT	__	AA	CC	GG	AA	TT	TT
12._GU_171_/C	__	TT	TT	__	__	__	TT	__	AA	CC	GG	AA	TT	TT
13._GU_171_/C	__	TT	TT	__	__	__	TT	__	AA	CC	GG	AA	TT	TT
14._GU_171_/C	__	TT	TT	__	__	__	TT	__	AA	CC	GG	AA	TT	TT
15._GU_171_/C	__	TT	TT	__	__	__	TT	__	AA	CC	GG	AA	TT	TT
16._GU_171_/C	__	TT	TT	__	__	__	TT	__	AA	CC	GG	AA	TT	TT
17._GC-01-094-5-11	TT	TT	TT	TT	__	GG	TT	CC	AA	CC	GG	AA	TT	TT
18._RUQ_195	__	TT	__	TT	__	__	__	CC	AA	CC	GG	AA	TT	TT
19._RUQ_195	__	TT	TT	__	CC	__	TT	__	AA	CC	GG	AG	TT	TT

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	GG	TT	GG	AA	GG	GG	GG	GG	GG	TT	TT	GG	GG	AA
1._RUQ_195	GG	TT	GG	AA	GG	GG	GG	GG	GG	TT	TT	GG	GG	AA
2._GC-01-94-5-11	GG	TT	GG	AA	GG	GG	GG	GG	GG	TT	TT	GG	GG	AA
3._RUQ_195	__	__	__	__	__	GG	__	__	__	__	__	GG	__	__
4._GC-01-094-5-11	CC	AA	GG	AA	CC	GG	GG	CC	GG	AA	TT	GG	GG	AA
5._GC-01-094-5-11	CC	AA	GG	AA	CC	GG	GG	CC	GG	AA	TT	GG	GG	AA
6._GC-01-094-5-11	CC	AA	GG	AA	CC	GG	GG	CC	GG	AA	TT	GG	GG	AA
7._GC-01-094-5-11	CC	AA	GG	AA	CC	GG	GG	CC	GG	AA	TT	GG	GG	AA
8._GC-01-094-5-11	CC	AA	GG	AA	CC	GG	GG	CC	GG	AA	TT	GG	GG	AA
9._GC-01-094-5-11	CC	AA	GG	AA	CC	GG	GG	CC	GG	AA	TT	GG	GG	AA
10._GU_171_/C	CC	__	__	AA	CC	GG	__	CC	GG	__	TT	__	__	AA
11._GU_171_/C	CC	__	__	AA	CC	GG	__	CC	GG	__	TT	__	__	AA
12._GU_171_/C	CC	__	__	AA	CC	GG	__	CC	GG	__	TT	__	__	AA
13._GU_171_/C	CC	__	__	AA	CC	GG	__	CC	GG	__	TT	__	__	AA
14._GU_171_/C	CC	__	__	AA	CC	GG	__	CC	GG	__	TT	__	__	AA
15._GU_171_/C	CC	__	__	AA	CC	GG	__	CC	GG	__	TT	__	__	AA
16._GU_171_/C	CC	__	__	AA	CC	GG	__	CC	GG	__	TT	__	__	AA
17._GC-01-094-5-11	CC	AA	GG	AA	CC	GG	GG	CC	GG	AA	TT	GG	GG	AA
18._RUQ_195	__	__	GG	AA	CC	GG	__	CC	__	__	__	GG	GG	AA
19._RUQ_195	CC	__	__	AA	CC	GG	__	CC	GG	__	TT	__	__	AA

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AA	GG	GG	GG	TT	GG	AA	CC	AA	GG	CC	GG	CC	CC
1._RUQ_195	AA	GG	GG	GG	TT	GG	AA	CC	AA	GG	CC	GG	CC	CC
2._GC-01-94-5-11	AA	GG	GG	GG	TT	GG	AA	CC	AA	GG	CC	GG	CC	CC
3._RUQ_195	__	__	__	__	__	__	__	__	__	__	__	__	CC	CC
4._GC-01-094-5-11	TT	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	GG	CC	CC
5._GC-01-094-5-11	TT	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	GG	CC	CC
6._GC-01-094-5-11	TT	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	GG	CC	CC
7._GC-01-094-5-11	TT	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	GG	CC	CC
8._GC-01-094-5-11	TT	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	GG	CC	CC
9._GC-01-094-5-11	TT	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	GG	CC	CC
10._GU_171_/C	__	__	__	GG	__	__	__	__	AA	__	GG	__	CC	CC
11._GU_171_/C	__	__	__	GG	__	__	__	__	AA	__	GG	__	CC	CC
12._GU_171_/C	__	__	__	GG	__	__	__	__	AA	__	GG	__	CC	CC
13._GU_171_/C	__	__	__	GG	__	__	__	__	AA	__	GG	__	CC	CC
14._GU_171_/C	__	__	__	GG	__	__	__	__	AA	__	GG	__	CC	CC
15._GU_171_/C	__	__	__	GG	__	__	__	__	AA	__	GG	__	CC	CC
16._GU_171_/C	__	__	__	GG	__	__	__	__	AA	__	GG	__	CC	CC
17._GC-01-094-5-11	TT	GG	GG	GG	TT	CC	__	CC	AA	GG	GG	GG	CC	CC
18._RUQ_195	__	__	__	__	__	CC	__	__	AA	__	GG	__	CC	CC
19._RUQ_195	__	__	__	AG	__	__	__	__	AA	__	GG	__	CC	CC

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	GG	GG	GG	GG	AA	CC	AA	AA	AC	AA	AA	AA	CC	GG
1._RUQ_195	GG	GG	GG	GG	AA	CC	AA	AA	AC	AA	AA	AA	CC	GG
2._GC-01-94-5-11	GG	GG	GG	GG	AA	CC	AA	AA	AC	AA	AA	AA	CC	GG
3._RUQ_195	__	CC	__	__	__	GG	AA	__	__	__	__	AA	CC	__
4._GC-01-094-5-11	CC	CC	CC	AA	AA	GG	AA	TT	GT	TT	TT	AA	GG	__
5._GC-01-094-5-11	CC	CC	CC	AA	AA	GG	AA	TT	GT	TT	TT	AA	GG	__
6._GC-01-094-5-11	CC	CC	CC	AA	AA	GG	AA	TT	GT	TT	TT	AA	GG	__
7._GC-01-094-5-11	CC	CC	CC	AA	AA	GG	AA	TT	GT	TT	TT	AA	GG	__
8._GC-01-094-5-11	CC	CC	CC	AA	AA	GG	AA	TT	GT	TT	TT	AA	GG	__
9._GC-01-094-5-11	CC	CC	CC	AA	AA	GG	AA	TT	GT	TT	TT	AA	GG	__
10._GU_171_/C	__	__	CC	__	__	GG	__	__	__	__	__	__	__	__
11._GU_171_/C	__	__	CC	__	__	GG	__	__	__	__	__	__	__	__
12._GU_171_/C	__	__	CC	__	__	GG	__	__	__	__	__	__	__	__
13._GU_171_/C	__	__	CC	__	__	GG	__	__	__	__	__	__	__	__
14._GU_171_/C	__	__	CC	__	__	GG	__	__	__	__	__	__	__	__
15._GU_171_/C	__	__	CC	__	__	GG	__	__	__	__	__	__	__	__
16._GU_171_/C	__	__	CC	__	__	GG	__	__	__	__	__	__	__	__
17._GC-01-094-5-11	CC	CC	CC	AA	AA	GG	AA	TT	GT	TT	TT	AA	GG	__
18._RUQ_195	__	CC	CC	__	__	GG	AA	TT	__	__	TT	AA	__	__
19._RUQ_195	__	__	CC	__	__	GG	__	__	__	__	__	__	__	__

	71	72	73	74	75	76	77	78	79	80	81
_Input profile	CC	GG	GG	GG	CC	GG	GG	GG	AA	AA	AA	X_X	X_X	X_X
1._RUQ_195	CC	GG	GG	GG	CC	GG	GG	GG	AA	AA	AA	X_X	X_X	X_X
2._GC-01-94-5-11	CC	GG	GG	GG	CC	GG	GG	GG	AA	AA	AA	X_X	X_X	X_X
3._RUQ_195	GG	__	__	GG	__	__	__	__	__	__	AA	X_X	X_X	X_X
4._GC-01-094-5-11	GG	CC	CC	GG	CC	CC	GG	CC	AA	TT	AA	X_X	X_X	X_X
5._GC-01-094-5-11	GG	CC	CC	GG	CC	CC	GG	CC	AA	TT	AA	X_X	X_X	X_X
6._GC-01-094-5-11	GG	CC	CC	GG	CC	CC	GG	CC	AA	TT	AA	X_X	X_X	X_X
7._GC-01-094-5-11	GG	CC	CC	GG	CC	CC	GG	CC	AA	TT	AA	X_X	X_X	X_X
8._GC-01-094-5-11	GG	CC	CC	GG	CC	CC	GG	CC	AA	TT	AA	X_X	X_X	X_X
9._GC-01-094-5-11	GG	CC	CC	GG	CC	CC	GG	CC	AA	TT	AA	X_X	X_X	X_X
10._GU_171_/C	GG	CC	__	__	__	CC	GG	__	AA	TT	AA	X_X	X_X	X_X
11._GU_171_/C	GG	CC	__	__	__	CC	GG	__	AA	TT	AA	X_X	X_X	X_X
12._GU_171_/C	GG	CC	__	__	__	CC	GG	__	AA	TT	AA	X_X	X_X	X_X
13._GU_171_/C	GG	CC	__	__	__	CC	GG	__	AA	TT	AA	X_X	X_X	X_X
14._GU_171_/C	GG	CC	__	__	__	CC	GG	__	AA	TT	AA	X_X	X_X	X_X
15._GU_171_/C	GG	CC	__	__	__	CC	GG	__	AA	TT	AA	X_X	X_X	X_X
16._GU_171_/C	GG	CC	__	__	__	CC	GG	__	AA	TT	AA	X_X	X_X	X_X
17._GC-01-094-5-11	GG	CC	CC	GG	__	CC	GG	CC	AA	TT	AA	X_X	X_X	X_X
18._RUQ_195	GG	CC	__	GG	CC	__	__	__	__	__	AA	X_X	X_X	X_X
19._RUQ_195	GG	CC	__	__	__	CC	GG	__	AA	TT	AA	X_X	X_X	X_X

Input profile: GU_171_/C GC-01-94-5-11

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 11, Tree: 1 > FP1

Notes: Brazil_Selections_Poss_grandparent

1._GU_171_/C RUQ_195

identical
81 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

2._GU_171_/C GC-01-94-5-11

identical
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 11, Tree: 7

Notes: MCCS_Structure_refs_above_0.9membership

3._GU_171_/C RUQ_195

68.8 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

4._GU_171_/C GC-01-094-5-11

47.4 %
78 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

5._GU_171_/C GC-01-094-5-11

47.4 %
78 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10 > FP2

6._GU_171_/C GC-01-094-5-11

47.4 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

7._GU_171_/C GC-01-094-5-11

47.4 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP3

8._GU_171_/C GC-01-094-5-11

47.4 %
78 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

9._GU_171_/C GC-01-094-5-11

47.4 %
78 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

10._GU_171_/C

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1511 2 > FP

Dapeng Zhang, 2016

11._GU_171_/C

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1511 7

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

12._GU_171_/C

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1511 9

Dapeng Zhang, 2016

13._GU_171_/C

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1511 12

Dapeng Zhang, 2016

14._GU_171_/C

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1511 14

Dapeng Zhang, 2016

15._GU_171_/C

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1511 1 > FP

Dapeng Zhang, 2016

16._GU_171_/C

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1511 10 > F

Dapeng Zhang, 2016

17._GU_171_/C GC-01-094-5-11

46.8 %
77 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

18._GU_171_/C RUQ_195

45.9 %
37 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

19._GU_171_/C RUQ_195

45.7 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1350	20	TcSNP1383
21	TcSNP1414	22	TcSNP1439	23	TcSNP144	24	TcSNP1442	25	TcSNP1458
26	TcSNP1484	27	TcSNP150	28	TcSNP151	29	TcSNP1520	30	TcSNP154
31	TcSNP174	32	TcSNP193	33	TcSNP226	34	TcSNP230	35	TcSNP240
36	TcSNP242	37	TcSNP25	38	TcSNP316	39	TcSNP32	40	TcSNP329
41	TcSNP364	42	TcSNP372	43	TcSNP413	44	TcSNP418	45	TcSNP42
46	TcSNP429	47	TcSNP430	48	TcSNP448	49	TcSNP497	50	TcSNP521
51	TcSNP529	52	TcSNP547	53	TcSNP560	54	TcSNP561	55	TcSNP577
56	TcSNP591	57	TcSNP60	58	TcSNP602	59	TcSNP619	60	TcSNP653
61	TcSNP689	62	TcSNP723	63	TcSNP731	64	TcSNP75	65	TcSNP751
66	TcSNP776	67	TcSNP799	68	TcSNP823	69	TcSNP836	70	TcSNP860
71	TcSNP872	72	TcSNP891	73	TcSNP894	74	TcSNP899	75	TcSNP90
76	TcSNP917	77	TcSNP929	78	TcSNP944	79	TcSNP953	80	TcSNP994
81	TcSNP998