SNP Profiles of UF 712 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	CC	GG	AA	AA	GG	GG	CC	AT	AA	GG	GG	AA	AA
1._MITC-000350	AA	CC	GG	AA	AA	GG	GG	CC	AT	AA	GG	GG	AA	AA
2._MITC-000039	AA	CC	GG	AA	AA	GG	GG	CC	AT	AA	GG	GG	AA	AA
3._RUQ_1683	__	__	__	__	__	__	GG	__	__	__	__	__	__	__
4._GC-01-089-5-06	AA	CC	GG	AA	TT	CC	GG	GG	TT	TT	GG	CC	TT	TT
5._GC-01-089-5-06	AA	CC	GG	AA	TT	CC	GG	GG	TT	TT	GG	CC	TT	TT
6._GC-01-089-5-06	AA	CC	GG	AA	TT	CC	GG	GG	TT	TT	GG	CC	TT	TT
7._GC-01-089-5-06	AA	CC	GG	AA	TT	CC	GG	GG	TT	TT	GG	CC	TT	TT
8._RUQ_1638	__	__	__	__	__	CC	GG	__	AT	__	__	__	__	__
9._RUQ_1638	__	__	__	__	__	CC	GG	__	AT	__	__	__	__	__
10._UF_712	__	__	__	__	__	CC	GG	__	AT	__	__	__	__	__
11._UF_712	__	__	__	__	__	CC	GG	__	TT	__	__	__	__	__
12._UF_712	__	__	__	__	__	CC	GG	__	TT	__	__	__	__	__
13._UF_712	__	__	__	__	__	CC	GG	__	TT	__	__	__	__	__
14._UF_712	__	__	__	__	__	CC	GG	__	TT	__	__	__	__	__
15._RUQ_1683	__	__	__	__	__	CC	__	GG	__	__	GG	__	__	__
16._RUQ_1638	__	__	__	__	__	CC	__	GG	__	__	GG	__	__	__
17._UF_712	__	__	__	__	__	CC	GG	__	AT	__	__	__	__	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	AA	GG	CC	GG	GG	GG	CC	AA	GG	GG	CC	AA
1._MITC-000350	AA	CC	AA	GG	CC	GG	GG	GG	CC	AA	GG	GG	CC	AA
2._MITC-000039	AA	CC	AA	GG	CC	GG	GG	GG	CC	AA	GG	GG	CC	AA
3._RUQ_1683	__	GG	__	__	__	__	__	__	CC	__	CC	__	__	__
4._GC-01-089-5-06	TT	GG	TT	__	__	GG	CC	CC	CC	TT	__	GG	GG	TT
5._GC-01-089-5-06	TT	GG	TT	__	__	GG	CC	CC	CC	TT	CC	GG	GG	TT
6._GC-01-089-5-06	TT	GG	TT	__	__	GG	CC	CC	CC	TT	CC	GG	GG	TT
7._GC-01-089-5-06	TT	GG	TT	__	__	GG	CC	CC	CC	TT	CC	GG	GG	TT
8._RUQ_1638	__	GG	TT	__	CC	__	CC	__	CC	TT	CC	GG	GG	TT
9._RUQ_1638	__	GG	TT	__	CC	__	CC	__	CC	TT	CC	GG	GG	TT
10._UF_712	__	GG	TT	__	CC	__	CC	__	CC	TT	CC	GG	GG	TT
11._UF_712	__	GG	TT	__	__	__	CC	__	CC	TT	__	GG	GG	TT
12._UF_712	__	GG	TT	__	__	__	CC	__	CC	TT	CC	GG	GG	TT
13._UF_712	__	GG	TT	__	__	__	CC	__	CC	TT	CC	GG	GG	TT
14._UF_712	__	GG	TT	__	__	__	CC	__	CC	TT	CC	GG	GG	TT
15._RUQ_1683	__	GG	__	CC	__	__	__	CC	CC	TT	CC	GG	GG	TT
16._RUQ_1638	__	GG	__	CC	__	__	__	CC	CC	TT	CC	GG	GG	TT
17._UF_712	__	GG	TT	__	CC	__	CC	__	CC	TT	CC	GG	GG	TT

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	GG	TT	GG	CC	GG	AA	GG	GG	CC	CC	AA	AA	AA	GG
1._MITC-000350	GG	TT	GG	CC	GG	AA	GG	GG	CC	CC	AA	AA	AA	GG
2._MITC-000039	GG	TT	GG	CC	GG	AA	GG	GG	CC	CC	AA	AA	AA	GG
3._RUQ_1683	__	__	__	__	__	AA	__	__	__	__	__	__	AA	__
4._GC-01-089-5-06	CC	AA	GG	CC	CC	AA	GG	CC	CC	GG	TT	AA	AA	GG
5._GC-01-089-5-06	CC	AA	GG	CC	CC	AA	GG	CC	CC	GG	TT	AA	AA	GG
6._GC-01-089-5-06	CC	AA	GG	CC	CC	AA	GG	CC	CC	GG	TT	AA	AA	GG
7._GC-01-089-5-06	CC	AA	GG	CC	CC	AA	GG	CC	CC	GG	TT	AA	AA	GG
8._RUQ_1638	CC	__	__	CC	CC	AA	__	CC	CC	__	__	AA	__	__
9._RUQ_1638	CC	__	__	CC	CC	AA	__	CC	CC	__	__	AA	__	__
10._UF_712	CC	__	__	CC	CC	AA	__	CC	CC	__	__	AA	__	__
11._UF_712	CC	__	__	CC	CC	AA	__	CC	CC	__	__	AA	__	__
12._UF_712	CC	__	__	CC	CC	AA	__	CC	CC	__	__	AA	__	__
13._UF_712	CC	__	__	CC	CC	AA	__	CC	CC	__	__	AA	__	__
14._UF_712	CC	__	__	CC	CC	AA	__	CC	CC	__	__	AA	__	__
15._RUQ_1683	__	__	GG	CC	CC	AA	__	CC	__	__	__	__	AA	GG
16._RUQ_1638	__	__	GG	CC	CC	AA	__	CC	__	__	__	__	AA	GG
17._UF_712	CC	__	__	CC	CC	__	__	CC	CC	__	__	AA	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	TT	GG	AA	AA	AA	AA	GG	GG	AA	AA	AA	CC	GG	GG
1._MITC-000350	TT	GG	AA	AA	AA	AA	GG	GG	AA	AA	AA	CC	GG	GG
2._MITC-000039	TT	GG	AA	AA	AA	AA	GG	GG	AA	AA	AA	CC	GG	GG
3._RUQ_1683	__	__	__	__	__	__	__	__	__	AA	__	__	__	GG
4._GC-01-089-5-06	TT	CC	AA	AA	AA	AA	CC	__	AA	AA	AA	GG	GG	GG
5._GC-01-089-5-06	TT	CC	AA	AA	AA	AA	CC	__	AA	AA	AA	GG	GG	GG
6._GC-01-089-5-06	TT	CC	AA	AA	AA	AA	CC	__	AA	AA	AA	GG	GG	GG
7._GC-01-089-5-06	TT	CC	AA	AA	AA	AA	CC	__	AA	AA	AA	GG	GG	GG
8._RUQ_1638	TT	__	__	__	AA	__	__	__	__	AA	__	GG	__	GG
9._RUQ_1638	TT	__	__	__	AA	__	__	__	__	AA	__	GG	__	GG
10._UF_712	TT	__	__	__	AA	__	__	__	__	AA	__	GG	__	GG
11._UF_712	TT	__	__	__	AA	__	__	__	__	AA	__	GG	__	GG
12._UF_712	TT	__	__	__	AA	__	__	__	__	AA	__	GG	__	GG
13._UF_712	TT	__	__	__	AA	__	__	__	__	AA	__	GG	__	GG
14._UF_712	TT	__	__	__	AA	__	__	__	__	AA	__	GG	__	GG
15._RUQ_1683	TT	__	__	__	__	__	CC	__	__	AA	__	GG	__	GG
16._RUQ_1638	TT	__	__	__	__	__	CC	__	__	AA	__	GG	__	GG
17._UF_712	TT	__	__	__	AA	__	__	__	__	AA	__	GG	__	GG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	CC	GG	GG	AG	AA	AA	CC	AA	AA	AA	AA	AA	CC	GG
1._MITC-000350	CC	GG	GG	AG	AA	AA	CC	AA	AA	AA	AA	AA	CC	GG
2._MITC-000039	CC	GG	GG	AG	AA	AA	CC	AA	AA	AA	AA	AA	CC	GG
3._RUQ_1683	__	__	CC	__	__	__	GG	AA	__	__	__	__	CC	CC
4._GC-01-089-5-06	CC	CC	CC	CT	AA	AA	GG	AA	TT	TT	TT	TT	CC	CC
5._GC-01-089-5-06	CC	CC	CC	CT	AA	AA	GG	AA	TT	TT	TT	TT	CC	CC
6._GC-01-089-5-06	CC	CC	CC	CT	AA	AA	GG	AA	TT	TT	TT	TT	CC	CC
7._GC-01-089-5-06	CC	CC	CC	CT	AA	AA	GG	AA	TT	TT	TT	TT	CC	CC
8._RUQ_1638	CC	__	__	CT	__	__	GG	__	__	__	__	__	__	__
9._RUQ_1638	CC	__	__	CT	__	__	GG	__	__	__	__	__	__	__
10._UF_712	CC	__	__	CT	__	__	GG	__	__	__	__	__	__	__
11._UF_712	CC	__	__	CT	__	__	GG	__	__	__	__	__	__	__
12._UF_712	CC	__	__	CT	__	__	GG	__	__	__	__	__	__	__
13._UF_712	CC	__	__	CT	__	__	GG	__	__	__	__	__	__	__
14._UF_712	CC	__	__	CT	__	__	GG	__	__	__	__	__	__	__
15._RUQ_1683	CC	__	CC	CT	__	__	GG	AA	TT	__	__	TT	CC	__
16._RUQ_1638	CC	__	CC	CT	__	__	GG	AA	TT	__	__	TT	CC	__
17._UF_712	TT	__	__	CT	__	__	GG	__	__	__	__	__	__	__

	71	72	73	74	75	76	77	78	79	80	81	82
_Input profile	AA	CC	AA	CC	GG	CC	GG	GG	GG	TT	AA	AA	X_X	X_X
1._MITC-000350	AA	CC	AA	CC	GG	CC	GG	GG	GG	TT	AA	AA	X_X	X_X
2._MITC-000039	AA	CC	AA	CC	GG	CC	GG	GG	GG	TT	AA	AA	X_X	X_X
3._RUQ_1683	__	GG	__	__	GG	__	__	__	__	__	__	AA	X_X	X_X
4._GC-01-089-5-06	AA	GG	TT	GG	GG	CC	CC	GG	CC	TT	TT	AA	X_X	X_X
5._GC-01-089-5-06	AA	GG	TT	GG	GG	CC	CC	GG	CC	TT	TT	AA	X_X	X_X
6._GC-01-089-5-06	AA	GG	TT	GG	GG	CC	CC	GG	CC	TT	TT	AA	X_X	X_X
7._GC-01-089-5-06	AA	GG	TT	GG	GG	CC	CC	GG	CC	TT	TT	AA	X_X	X_X
8._RUQ_1638	__	GG	TT	__	__	__	CC	GG	__	TT	TT	AA	X_X	X_X
9._RUQ_1638	__	GG	TT	__	__	__	CC	GG	__	TT	TT	AA	X_X	X_X
10._UF_712	__	GG	TT	__	__	__	CC	__	__	TT	TT	AA	X_X	X_X
11._UF_712	__	GG	TT	__	__	__	CC	GG	__	TT	TT	AA	X_X	X_X
12._UF_712	__	GG	TT	__	__	__	CC	GG	__	TT	TT	AA	X_X	X_X
13._UF_712	__	GG	TT	__	__	__	CC	GG	__	TT	TT	AA	X_X	X_X
14._UF_712	__	GG	TT	__	__	__	CC	GG	__	TT	TT	AA	X_X	X_X
15._RUQ_1683	__	GG	TT	__	__	CC	__	__	__	__	__	AA	X_X	X_X
16._RUQ_1638	__	GG	TT	__	__	CC	__	__	__	__	__	AA	X_X	X_X
17._UF_712	__	GG	TT	__	__	__	CC	__	__	TT	TT	AA	X_X	X_X

Input profile: UF_712 RUQ_1683

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

1._UF_712 MITC-000350

identical
82 shared markers

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USDA-SHRS, United States of America

2._UF_712 MITC-000039

identical
82 shared markers

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USDA-SHRS, United States of America

3._UF_712 RUQ_1683

62.5 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

4._UF_712 GC-01-089-5-06

49.4 %
78 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

5._UF_712 GC-01-089-5-06

48.7 %
79 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

6._UF_712 GC-01-089-5-06

48.7 %
79 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

7._UF_712 GC-01-089-5-06

48.7 %
79 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

8._UF_712 RUQ_1638

48.6 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

9._UF_712 RUQ_1638

48.6 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

10._UF_712

47.1 %
34 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

11._UF_712

47 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1506 3

Dapeng Zhang, 2016

12._UF_712

45.6 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1506 1

Dapeng Zhang, 2016

13._UF_712

45.6 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1506 2

Dapeng Zhang, 2016

14._UF_712

45.6 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1506 4

Dapeng Zhang, 2016

15._UF_712 RUQ_1683

44.4 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

16._UF_712 RUQ_1638

44.4 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

17._UF_712

42.4 %
33 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: La Montaña Lot 6 Row 39 34_36

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1350	20	TcSNP1383
21	TcSNP1414	22	TcSNP1439	23	TcSNP144	24	TcSNP1442	25	TcSNP1458
26	TcSNP1484	27	TcSNP150	28	TcSNP151	29	TcSNP1520	30	TcSNP154
31	TcSNP174	32	TcSNP193	33	TcSNP226	34	TcSNP230	35	TcSNP240
36	TcSNP242	37	TcSNP25	38	TcSNP28	39	TcSNP316	40	TcSNP32
41	TcSNP329	42	TcSNP364	43	TcSNP372	44	TcSNP413	45	TcSNP418
46	TcSNP42	47	TcSNP429	48	TcSNP430	49	TcSNP448	50	TcSNP497
51	TcSNP521	52	TcSNP529	53	TcSNP547	54	TcSNP560	55	TcSNP561
56	TcSNP577	57	TcSNP591	58	TcSNP60	59	TcSNP602	60	TcSNP619
61	TcSNP653	62	TcSNP689	63	TcSNP723	64	TcSNP731	65	TcSNP75
66	TcSNP751	67	TcSNP776	68	TcSNP799	69	TcSNP823	70	TcSNP836
71	TcSNP860	72	TcSNP872	73	TcSNP891	74	TcSNP894	75	TcSNP899
76	TcSNP90	77	TcSNP917	78	TcSNP929	79	TcSNP944	80	TcSNP953
81	TcSNP994	82	TcSNP998