SNP Profiles of UF 667   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ACACAGAAAGAGAAACAAGGAGAAAAAC
1._GC-01-29-2-6
ACACAGAAAGAGAAACAAGGAGAAAAAC
2._RUQ_55
____________AA______________
3._UF_667_Fld#_119_Plt#_1
ACAAAAAAAGGGAGACAAGGGGAGAGAA
4._UF_667
____________AA__AA__________
5._UF_667
____________AA__AA__________
6._UF_667
__________CTAA__AA__________
7._UF_667
__________CTAA__AA__________
8._UF_667
__________CTAA__AA__________
9._UF_667
__________CTAA__AA__________
10._UF_667
__________CTAA__AA__________
11._RUQ_55
__________CTAA__AA__________
12._UF_667
__________CTAA__AA__________
13._GC-01-029-2-06
ACACAGAACT__AAGTAACCAGTTTTGT
14._GC-01-029-2-06
ACACAGAACT__AAGTAACCAGTTTTGT
15._GC-01-029-2-06
ACACAGAACTCTAAGTAACCAGTTTTGT
16._GC-01-029-2-06
ACACAGAACTCTAAGTAACCAGTTTTGT
17._GC-01-029-2-06
ACACAGAACTCTAAGTAACCAGTTTTGT
18._GC-01-029-2-06
ACACAGAACTCTAAGTAACCAGTTTTGT
19._UF_667
__________CTAA__AA__________
20._UF_667
__________CTAA__AA__________
21._GC-01-029-2-06
ACACAGAACTCTAAGTAACCAGTTTTGT
22._RUQ_55
__________CT__GT____AG______
23._UF_667
__________CCGG__AA__________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AGAAGGAGAAGGAAAGACAGCGAGACAG
1._GC-01-29-2-6
AGAAGGAGAAGGAAAGACAGCGAGACAG
2._RUQ_55
__GT____________AC__CG______
3._UF_667_Fld#_119_Plt#_1
AAAAAGGGACGGAGAGCCAGCCAGACAA
4._UF_667
__GTCC__AA__TT__ACCTCGAGGTCT
5._UF_667
__GTCC__AA__TT__ACCTCGAGGTCT
6._UF_667
__GTCC__AA__TT__ACCTCGAGGTCT
7._UF_667
__GTCC__AA__TT__ACCTCGAGGTCT
8._UF_667
__GTCC__AA__TT__ACCTCGAGGTCT
9._UF_667
__GTCC__AA__TT__ACCTCGAGGTCT
10._UF_667
__GTCC__AA__TT__ACCTCGAGGTCT
11._RUQ_55
__GTCC__AA__TT__ACCTCGAGGTCT
12._UF_667
__GTCC__AA__TT__ACCTCGAGGTCT
13._GC-01-029-2-06
CTGTCCTTAAGGTT__ACCTCGAGGTCT
14._GC-01-029-2-06
CTGTCCTTAAGGTTCTACCTCGAGGTCT
15._GC-01-029-2-06
CTGTCCTTAAGGTTCTACCTCGAGGTCT
16._GC-01-029-2-06
CTGTCCTTAAGGTTCTACCTCGAGGTCT
17._GC-01-029-2-06
CTGTCCTTAAGGTTCTACCTCGAGGTCT
18._GC-01-029-2-06
CTGTCCTTAAGGTTCTACCTCGAGGTCT
19._UF_667
__GTCC__AA__TT__ACCTCGAGGTCT
20._UF_667
__GTCC__AA__TT__ACCTCGAGGTCT
21._GC-01-029-2-06
CTGTCCTTAAGGTTCTACCTCGAGGTCT
22._RUQ_55
__GT__CT______CTACCTCGAGGTCT
23._UF_667
__TTTT__CC__TT__ACCTCGGGGTCT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AGATAGACCGAGGGAGGGCCATATAGAG
1._GC-01-29-2-6
AGATAGACCGAGGGAGGGCCATATAGAG
2._RUQ_55
__________AG____________AG__
3._UF_667_Fld#_119_Plt#_1
GGAAAGAAGGAAGGAGGGCCTTATAAGG
4._UF_667
CT____ACCGAG__CTGG____AT____
5._UF_667
CT____ACCGAG__CTGG____AT____
6._UF_667
CT____ACCGAG__CTGG____AT____
7._UF_667
CT____ACCGAG__CTGG____AT____
8._UF_667
CT____ACCGAG__CTGG____AT____
9._UF_667
CT____ACCGAG__CTGG____AT____
10._UF_667
CT____ACCGAG__CTGG____AT____
11._RUQ_55
CT____ACCGAG__CTGG____AT____
12._UF_667
CT____ACCGAG__CTGG____AT____
13._GC-01-029-2-06
CTATAGACCGAGGGCTGGGGATATAGAG
14._GC-01-029-2-06
CTATAGACCGAGGGCTGGGGATATAGAG
15._GC-01-029-2-06
CTATAGACCGAGGGCTGGGGATATAGAG
16._GC-01-029-2-06
CTATAGACCGAGGGCTGGGGATATAGAG
17._GC-01-029-2-06
CTATAGACCGAGGGCTGGGGATATAGAG
18._GC-01-029-2-06
CTATAGACCGAGGGCTGGGGATATAGAG
19._UF_667
CT____AC__AG__CTGG____AT____
20._UF_667
CT____ACGGAG__CTGG____AT____
21._GC-01-029-2-06
CTATAGAC__AGGGCTGGGGATATAGAG
22._RUQ_55
____AGACCGAG__CT________AGAG
23._UF_667
CC____AACCAG__CCGG____AT____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
ATAGAGAGGGATCGAGCCCCGGACAACC
1._GC-01-29-2-6
ATAGAGAGGGATCGAGCCCCGGACAACC
2._RUQ_55
__________________AC______CC
3._UF_667_Fld#_119_Plt#_1
ATAGGGAGGGATCGAGACACAGACAGCG
4._UF_667
AT______GG________CC__GT__CC
5._UF_667
AT______GG________CC__GT__CC
6._UF_667
AT______GG________CC__GT__CC
7._UF_667
AT______GG________CC__GT__CC
8._UF_667
AT______GG________CC__GT__CC
9._UF_667
AT______GG________CC__GT__CC
10._UF_667
AT______GG________CC__GT__CC
11._RUQ_55
AT______GG________CC__GT__CC
12._UF_667
AT______GG________CC__GT__CC
13._GC-01-029-2-06
ATCTAGAGGGATCG__CCCCGGGTAACC
14._GC-01-029-2-06
ATCTAGAGGGATCG__CCCCGGGTAACC
15._GC-01-029-2-06
ATCTAGAGGGATCG__CCCCGGGTAACC
16._GC-01-029-2-06
ATCTAGAGGGATCG__CCCCGGGTAACC
17._GC-01-029-2-06
ATCTAGAGGGATCG__CCCCGGGTAACC
18._GC-01-029-2-06
ATCTAGAGGGATCG__CCCCGGGTAACC
19._UF_667
AT______GG________CC__GT__CC
20._UF_667
AT______GG________CC__GT__CC
21._GC-01-029-2-06
ATCTAGAGGGATCG__CCCCGGGTAACC
22._RUQ_55
AT__________CG____CC__GT__CC
23._UF_667
AA______GG________AA__GG__CG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
ACAGGGAGAGAGACAGAGACACACACCC
1._GC-01-29-2-6
ACAGGGAGAGAGACAGAGACACACACCC
2._RUQ_55
AC__CC______GTAG________ACTT
3._UF_667_Fld#_119_Plt#_1
ACAGGGAAAGAACCGGAGACACACCCCG
4._UF_667
AC____CT____GT______________
5._UF_667
AC____CT____GT______________
6._UF_667
AC____CT____GT______________
7._UF_667
AC____CT____GT______________
8._UF_667
AC____CT____GT______________
9._UF_667
AC____CT____GT______________
10._UF_667
AC____CT____GT______________
11._RUQ_55
AC____CT____GT______________
12._UF_667
AC____CT____GT______________
13._GC-01-029-2-06
ACCTCCCTAGAGGTAGCTGTGTGTACGG
14._GC-01-029-2-06
ACCTCCCTAG__GTAGCTGTGTGTACGG
15._GC-01-029-2-06
ACCTCCCTAGAGGTAGCTGTGTGTACGG
16._GC-01-029-2-06
ACCTCCCTAGAGGTAGCTGTGTGTACGG
17._GC-01-029-2-06
ACCTCCCTAGAGGTAGCTGTGTGTACGG
18._GC-01-029-2-06
ACCTCCCTAGAGGTAGCTGTGTGTACGG
19._UF_667
AC____CT____GT______________
20._UF_667
AC____CT____GT______________
21._GC-01-029-2-06
ACCTCCCTAGAGGTAGCTGTGTGTACGG
22._RUQ_55
AA__CCCT____GTAGCT____GTAC__
23._UF_667
CC____TT____GG______________
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
AGCGGGGGAGACAAGGAGAAAGAGX_XX_X
1._GC-01-29-2-6
AGCGGGGGAGACAAGGAGAAAGAGX_XX_X
2._RUQ_55
__CG____AG____________AGX_XX_X
3._UF_667_Fld#_119_Plt#_1
GGGGAGGGGGACAGGGAGATAAAAX_XX_X
4._UF_667
__CGCC______TTGG__AACTAGX_XX_X
5._UF_667
__CGCC______TTGG__AACTAGX_XX_X
6._UF_667
__CGCC______TTGG__AACTAGX_XX_X
7._UF_667
__CGCC______TTGG__AACTAGX_XX_X
8._UF_667
__CGCC______TTGG__AACTAGX_XX_X
9._UF_667
__CGCC______TTGG__AACTAGX_XX_X
10._UF_667
__CGCC______TTGG__AACTAGX_XX_X
11._RUQ_55
__CGCC______TTGG__AACTAGX_XX_X
12._UF_667
__CGCC______TTGG__AACTAGX_XX_X
13._GC-01-029-2-06
AACGCCCC__ACTTGGCTAACTAGX_XX_X
14._GC-01-029-2-06
AACGCCCCAGACTTGGCTAACTAGX_XX_X
15._GC-01-029-2-06
AACGCCCCAGACTTGGCTAACTAGX_XX_X
16._GC-01-029-2-06
AACGCCCCAGACTTGGCTAACTAGX_XX_X
17._GC-01-029-2-06
AACGCCCCAGACTTGGCTAACTAGX_XX_X
18._GC-01-029-2-06
AACGCCCCAGACTTGGCTAACTAGX_XX_X
19._UF_667
__CGCC______TTGG__AACTAGX_XX_X
20._UF_667
__CGCC______TTGG__AACTAGX_XX_X
21._GC-01-029-2-06
AACGCCCCAGACTTGGCTAACTAGX_XX_X
22._RUQ_55
__CGCC____AC__________AGX_XX_X
23._UF_667
__GGCC______CTCG__AACCAGX_XX_X

Input profile: UF_667 RUQ_55

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._UF_667 GC-01-29-2-6

identical
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 6, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

2._UF_667 RUQ_55

73.5 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

3._UF_667 UF_667_Fld#_119_Plt#_1

73.2 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 119, Tree: 1
 Mars, 2018

4._UF_667

58.8 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 7
 Dapeng Zhang, 2016

5._UF_667

58.8 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 2
 Dapeng Zhang, 2016

6._UF_667

57.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 3
 Dapeng Zhang, 2016

7._UF_667

57.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 5 > FP
 Dapeng Zhang, 2016

8._UF_667

57.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 1 > FP
 Dapeng Zhang, 2016

9._UF_667

57.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 10
 Dapeng Zhang, 2016

10._UF_667

57.1 %
35 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

11._UF_667 RUQ_55

57.1 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

12._UF_667

57.1 %
35 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: C0244
 Dapeng Zhang, 2016

13._UF_667 GC-01-029-2-06

57.1 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

14._UF_667 GC-01-029-2-06

56.3 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

15._UF_667 GC-01-029-2-06

56.2 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

16._UF_667 GC-01-029-2-06

56.2 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

17._UF_667 GC-01-029-2-06

56.2 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

18._UF_667 GC-01-029-2-06

56.2 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

19._UF_667

55.9 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 11 > F
 Dapeng Zhang, 2016

20._UF_667

55.7 %
35 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F466 T2
 Dapeng Zhang, 2016

21._UF_667 GC-01-029-2-06

55.6 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP4
 Mars, 2018

22._UF_667 RUQ_55

54.2 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

23._UF_667

37.1 %
35 shared markers

Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 292 I-042
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998