SNP Profiles of UF 667   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ACACAGAAAGAGAAACAAGGAGAAAAAC
1._SPEC_160_/9___
____________AA______________
2._SPEC_160_/9___
__________CTAA__AA__________
3._SPEC_160_/9___
__________CTAA__AA__________
4._SPEC_160_/9___
__________CTAA__AA__________
5._SPEC_160_/9___
__________CTAA__AA__________
6._SPEC_160_/9___
__________CTAA__AA__________
7._SPEC_160_/9___
__________CTAA__AA__________
8._SPEC_160_/9___
ACACAGAACTCTAAGTAACCAGTTTTGT
9._SPEC_160_/9___
ACACAGAACTCTAAGTAACCAGTTTTGT
10._SPEC_160_/9___
ACACAGAACTCTAAGTAACCAGTTTTGT
11._SPEC_160_/9___
ACACAGAACTCTAAGTAACCAGTTTTGT
12._SPEC_160_/9___
ACACAGAACTCTAAGTAACCAGTTTTGT
13._SPEC_160_/9___
____________AA__AA__________
14._SPEC_160_/9___
__________CT__GT____AG______
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AGGGAGAAGGAAAGACAGCCGGACAGAG
1._SPEC_160_/9___
______________AC__CG________
2._SPEC_160_/9___
__CC__AA__TT__ACCT__GGGTCTCT
3._SPEC_160_/9___
__CC__AA__TT__ACCTCGGGGTCTCT
4._SPEC_160_/9___
__CC__AA__TT__ACCTCGGGGTCTCT
5._SPEC_160_/9___
__CC__AA__TT__ACCTCGGGGTCTCT
6._SPEC_160_/9___
__CC__AA__TT__ACCTCGGGGTCTCT
7._SPEC_160_/9___
__CC__AA__TT__ACCTCGGGGTCTCT
8._SPEC_160_/9___
CTCCTTAAGGTTCTACCTCGGGGTCTCT
9._SPEC_160_/9___
CTCCTTAAGGTTCTACCTCGGGGTCTCT
10._SPEC_160_/9___
CTCCTTAAGGTTCTACCTCGGGGTCTCT
11._SPEC_160_/9___
CTCCTTAAGGTTCTACCTCGGGGTCTCT
12._SPEC_160_/9___
CTCCTTAAGGTTCTACCTCGGGGTCTCT
13._SPEC_160_/9___
__CC__AA__TT__ACCTGGGGGTCT__
14._SPEC_160_/9___
____CT______CTACCTCGGGGTCT__
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
ATAGACCGAGGGAGGGCCATATAGAGAT
1._SPEC_160_/9___
________AG____________AG____
2._SPEC_160_/9___
____ACCGAG__CTGG____AT____AT
3._SPEC_160_/9___
____ACCGAG__CTGG____AT____AT
4._SPEC_160_/9___
____ACCGAG__CTGG____AT____AT
5._SPEC_160_/9___
____ACCGAG__CTGG____AT____AT
6._SPEC_160_/9___
____ACCGAG__CTGG____AT____AT
7._SPEC_160_/9___
____ACCGAG__CTGG____AT____AT
8._SPEC_160_/9___
ATAGACCGAGGGCTGGGGATATAGAGAT
9._SPEC_160_/9___
ATAGACCGAGGGCTGGGGATATAGAGAT
10._SPEC_160_/9___
ATAGACCGAGGGCTGGGGATATAGAGAT
11._SPEC_160_/9___
ATAGACCGAGGGCTGGGGATATAGAGAT
12._SPEC_160_/9___
ATAGACCGAGGGCTGGGGATATAGAGAT
13._SPEC_160_/9___
____ACCGAG__CTGG____AT____AT
14._SPEC_160_/9___
__AGACCGAG__CT________AGAGAT
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AGAGAGGGATCGGGCCCCGGACAACCAC
1._SPEC_160_/9___
________________AC______CCAC
2._SPEC_160_/9___
______GG________CC__GT__CCAC
3._SPEC_160_/9___
______GG________CC__GT__CCAC
4._SPEC_160_/9___
______GG________CC__GT__CCAC
5._SPEC_160_/9___
______GG________CC__GT__CCAC
6._SPEC_160_/9___
______GG________CC__GT__CCAC
7._SPEC_160_/9___
______GG________CC__GT__CCAC
8._SPEC_160_/9___
CTAGAGGGATCG__CCCCGGGTAACCAC
9._SPEC_160_/9___
CTAGAGGGATCG__CCCCGGGTAACCAC
10._SPEC_160_/9___
CTAGAGGGATCG__CCCCGGGTAACCAC
11._SPEC_160_/9___
CTAGAGGGATCG__CCCCGGGTAACCAC
12._SPEC_160_/9___
CTAGAGGGATCG__CCCCGGGTAACCAC
13._SPEC_160_/9___
______GG________CC______CCAT
14._SPEC_160_/9___
__________CG____CC__GT__CCAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
AGGGGGAGAGACAGAGAAACACACCCAG
1._SPEC_160_/9___
__CC______GTAG________ACTT__
2._SPEC_160_/9___
____CC____GT________________
3._SPEC_160_/9___
____CC____GT________________
4._SPEC_160_/9___
____CC____GT________________
5._SPEC_160_/9___
____CC____GT________________
6._SPEC_160_/9___
____CC____GT________________
7._SPEC_160_/9___
____CC____GT________________
8._SPEC_160_/9___
CTCCCCAGAGGTAGCTTTGTGTACGGAA
9._SPEC_160_/9___
CTCCCCAGAGGTAGCTTTGTGTACGGAA
10._SPEC_160_/9___
CTCCCCAGAGGTAGCTTTGTGTACGGAA
11._SPEC_160_/9___
CTCCCCAGAGGTAGCTTTGTGTACGGAA
12._SPEC_160_/9___
CTCCCCAGAGGTAGCTTTGTGTACGGAA
13._SPEC_160_/9___
____CC____GT________________
14._SPEC_160_/9___
__CCCC____GTAGCT____GTAC____
 71 72 73 74 75 76 77 78 79 80 81    
_Input profile
CGGGGGAGCCAAGGAGAAGGAGX_XX_XX_X
1._SPEC_160_/9___
CG____AG____________AGX_XX_XX_X
2._SPEC_160_/9___
CGCC______TTGG__AACCAGX_XX_XX_X
3._SPEC_160_/9___
CGCC______TTGG__AACCAGX_XX_XX_X
4._SPEC_160_/9___
CGCC______TTGG__AACCAGX_XX_XX_X
5._SPEC_160_/9___
CGCC______TTGG__AACCAGX_XX_XX_X
6._SPEC_160_/9___
CGCC______TTGG__AACCAGX_XX_XX_X
7._SPEC_160_/9___
CGCC______TTGG__AACCAGX_XX_XX_X
8._SPEC_160_/9___
CGCCCCAGCCTTGGCTAACCAGX_XX_XX_X
9._SPEC_160_/9___
CGCCCCAGCCTTGGCTAACCAGX_XX_XX_X
10._SPEC_160_/9___
CGCCCCAGCCTTGGCTAACCAGX_XX_XX_X
11._SPEC_160_/9___
CGCCCCAGCCTTGGCTAACCAGX_XX_XX_X
12._SPEC_160_/9___
CGCCCCAGCCTTGGCTAACCAGX_XX_XX_X
13._SPEC_160_/9___
CGCC______TTGG____CC__X_XX_XX_X
14._SPEC_160_/9___
CGCC____CC__________AGX_XX_XX_X

Input profile: SPEC_160_/9 RUQ_51

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._SPEC_160_/9 RUQ_51

75 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

2._SPEC_160_/9 RUQ_51

57.6 %
33 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

3._SPEC_160_/9

57.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8839 1
 Dapeng Zhang, 2016

4._SPEC_160_/9

57.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8839 2
 Dapeng Zhang, 2016

5._SPEC_160_/9

57.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8839 3
 Dapeng Zhang, 2016

6._SPEC_160_/9

57.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8839 4
 Dapeng Zhang, 2016

7._SPEC_160_/9

57.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8839 5
 Dapeng Zhang, 2016

8._SPEC_160_/9 GC-08-267-8-39

56.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

9._SPEC_160_/9 GC-08-267-8-39

56.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._SPEC_160_/9 GC-08-267-8-39

56.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

11._SPEC_160_/9 GC-08-267-8-39

56.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

12._SPEC_160_/9 GC-08-267-8-39

56.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

13._SPEC_160_/9

55.2 %
29 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: La Montaña, Lot 8, Row 24 4_6
 Dapeng Zhang, 2016

14._SPEC_160_/9 RUQ_51

54.3 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1270 17TcSNP1309 18TcSNP1350 19TcSNP1383 20TcSNP1414
21TcSNP1439 22TcSNP144 23TcSNP1442 24TcSNP1458 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP28 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998