SNP Profiles of POUND 7 /B   View Data

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 Key

 1234567891011121314
_Input profile
CCACAACCAAAGGGCCAAGGGGAAAACC
1._RUQ_24
____________GG______________
2._RUQ_24B
____________GG______________
3._GC-01-114-6-11
CCACAACCTTCTGGGGAACCGG__TTGG
4._GC-01-114-6-11
CCACAACCTTCTGGGGAACCGGTTTTGG
5._GC-01-114-6-11
CCACAACCTTCTGGGGAACCGGTTTTGG
6._GC-01-114-6-11
CCACAACCTTCTGGGGAACCGGTTTTGG
7._GC-01-114-6-11
CCACAACCTTCTGGGGAACCGGTTTTGG
8._GC-01-114-6-11
CCACAACCTTCTGGGGAACCGGTTTTGG
9._GC-01-114-6-11
CCACAACCTTCTGGGGAACCGGTTTTGG
10._GC-01-114-6-11
CCAC__CCTTCTGGGGAACCGGTTTTGG
11._POUND_7_/B
__________CTGG__AA__________
12._POUND_7_/B
__________CTGG__AA__________
13._POUND_7_/B
__________CTGG__AA__________
14._POUND_7_/B
__________CTGG__AA__________
15._POUND_7_/B
__________CTGG__AA__________
16._POUND_7_/B
__________CTGG__AA__________
17._POUND_7_/B
__________CTGG__AA__________
18._POUND_7_/B
__________CTGG__AA__________
19._POUND_7_/B
__________CTGG__AA__________
20._RUQ_24
__________CTGG__AA__________
21._RUQ_24
__________CT__GG____GG______
 1516171819202122232425262728
_Input profile
AAAAAAAAAAGGAAGGACAAGGAACCAG
1._RUQ_24
__TT____________AC__CC______
2._RUQ_24B
__TT____________AC__CC______
3._GC-01-114-6-11
TTTTTTTTAAGGTTCCACTTCCAAGGCT
4._GC-01-114-6-11
TTTTTTTTAAGGTTCCACTTCCAAGGCT
5._GC-01-114-6-11
TTTTTTTTAAGGTTCCACTTCCAAGGCT
6._GC-01-114-6-11
TTTTTTTTAAGGTTCCACTTCCAAGGCT
7._GC-01-114-6-11
TTTTTTTTAAGGTTCCACTTCCAAGGCT
8._GC-01-114-6-11
TTTTTTTTAAGGTTCCACTTCCAAGGCT
9._GC-01-114-6-11
TTTTTTTTAAGGTTCCACTTCCAAGGCT
10._GC-01-114-6-11
TTTTTTTTAAGGTTCCACTTCCAAGGCT
11._POUND_7_/B
__TTTT__AA__TT__ACTTCCAAGGCT
12._POUND_7_/B
__TTTT__AA__TT__ACTTCCAAGGCT
13._POUND_7_/B
__TTTT__AA__TT__ACTTCCAAGGCT
14._POUND_7_/B
__TTTT__AA__TT__ACTTCCAAGGCT
15._POUND_7_/B
__TTTT__AA__TT__ACTTCCAAGGCT
16._POUND_7_/B
__TTTT__AA__TT__ACTTCCAAGGCT
17._POUND_7_/B
__TTTT__AA__TT__ACTTCCAAGGCT
18._POUND_7_/B
__TTTT__AA__TT__ACTTCCAAGGCT
19._POUND_7_/B
__TTTT__AA__TT__ACTTCCAAGGCT
20._RUQ_24
__TTTT__AA__TT__ACTTCCAGGGCT
21._RUQ_24
__TT__TT______CCACTTCCAAGGCT
 2930313233343536373839404142
_Input profile
GGATGGAAGGAAGGAGGGCCTTTTAGGG
1._RUQ_24
__________AA____________AG__
2._RUQ_24B
__________AA____________AG__
3._GC-01-114-6-11
CCATGGAACCAAGGCTGGGGAATTAGGG
4._GC-01-114-6-11
CCATGGAACCAAGGCTGGGGAATTAGGG
5._GC-01-114-6-11
CCATGGAACCAAGGCTGGGGAATTAGGG
6._GC-01-114-6-11
CCATGGAACCAAGGCTGGGGAATTAGGG
7._GC-01-114-6-11
CCATGGAACCAAGGCTGGGGAATTAGGG
8._GC-01-114-6-11
CCATGGAACCAAGGCTGGGGAATTAGGG
9._GC-01-114-6-11
CCATGGAACCAAGGCTGGGGAATTAGGG
10._GC-01-114-6-11
CCATGGAACCAAGGCTGGGGAATTAGGG
11._POUND_7_/B
CC____AACCAA__CTGG____TT____
12._POUND_7_/B
CC____AACCAA__CTGG____TT____
13._POUND_7_/B
CC____AACCAA__CTGG____TT____
14._POUND_7_/B
CC____AACCAA__CTGG____TT____
15._POUND_7_/B
CC____AACCAA__CTGG____TT____
16._POUND_7_/B
CC____AACCAA__CTGG____TT____
17._POUND_7_/B
CC____AACCAA__CTGG____TT____
18._POUND_7_/B
CC____AACCAA__CTGG____TT____
19._POUND_7_/B
CC____AACCAA__CTGG____TT____
20._RUQ_24
CC____AACCAA__CTGG____TT____
21._RUQ_24
____GGAACCAA__CT________AGGG
 4344454647484950515253545556
_Input profile
AAAGGGGGGGAAGGAAAACCGGACGGGG
1._RUQ_24
__________________________GG
2._RUQ_24B
__________________________GG
3._GC-01-114-6-11
AACTGGGGGGAACC__AACCGGGTGGGG
4._GC-01-114-6-11
AACTGGGGGGAACC__AACCGGGTGGGG
5._GC-01-114-6-11
AACTGGGGGGAACC__AACCGGGTGGGG
6._GC-01-114-6-11
AACTGGGGGGAACC__AACCGGGTGGGG
7._GC-01-114-6-11
AACTGGGGGGAACC__AACCGGGTGGGG
8._GC-01-114-6-11
AACTGGGGGGAACC__AACCGGGTGGGG
9._GC-01-114-6-11
AACTGGGGGGAACC__AACCGGGTGGGG
10._GC-01-114-6-11
AACTGGGGGGAACC__AACCGGGTGGGG
11._POUND_7_/B
AA______GG________CC__GT__GG
12._POUND_7_/B
AA______GG________CC__GT__GG
13._POUND_7_/B
AA______GG________CC__GT__GG
14._POUND_7_/B
AA______GG________CC__GT__GG
15._POUND_7_/B
AA______GG________CC__GT__GG
16._POUND_7_/B
AA______GG________CC__GT__GG
17._POUND_7_/B
AA______GG________CC__GT__GG
18._POUND_7_/B
AA______GG________CC__GT__GG
19._POUND_7_/B
AA______GG________CC__GT__GG
20._RUQ_24
AA______GG________CC__GT__GG
21._RUQ_24
AA__________CC____CC__GT__GG
 5758596061626364656667686970
_Input profile
AAGGGGAGAAAACCGGAAAACCAAACCC
1._RUQ_24
AA__CC______GGGG________ACTT
2._RUQ_24B
AA__CC______GGGG________ACTT
3._GC-01-114-6-11
AACCCCCTAAAAGGGGTTTTGGTTACGG
4._GC-01-114-6-11
AACCCCCTAAAAGGGGTTTTGGTTACGG
5._GC-01-114-6-11
AACCCCCTAAAAGGGGTTTTGGTTACGG
6._GC-01-114-6-11
AACCCCCTAAAAGGGGTTTTGGTTACGG
7._GC-01-114-6-11
AACCCCCTAAAAGGGGTTTTGGTTACGG
8._GC-01-114-6-11
AACCCCCTAAAAGGGGTTTTGGTTACGG
9._GC-01-114-6-11
AACCCCCTAAAAGGGGTTTTGGTTACGG
10._GC-01-114-6-11
AACCCCCTAAAAGGGGTTTTGGTTACGG
11._POUND_7_/B
AA____CT____GG______________
12._POUND_7_/B
AA____CT____GG______________
13._POUND_7_/B
AA____CT____GG______________
14._POUND_7_/B
AA____CT____GG______________
15._POUND_7_/B
AA____CT____GG______________
16._POUND_7_/B
AA____CT____GG______________
17._POUND_7_/B
AA____CT____GG______________
18._POUND_7_/B
AA____CT____GG______________
19._POUND_7_/B
AA____CT____GG______________
20._RUQ_24
AA____CT____GG______________
21._RUQ_24
AA__CCCT____GGGGTT____TTAC__
 717273747576777879808182  
_Input profile
GGGGAGGGGGCCAGGGGGAAAGAGX_XX_X
1._RUQ_24
__CC____GG____________AGX_XX_X
2._RUQ_24B
__CC____GG____________AGX_XX_X
3._GC-01-114-6-11
__CCCTCCGGCCCTGGCCAACTAGX_XX_X
4._GC-01-114-6-11
__CCCTCCGGCCCTGGCCAACTAGX_XX_X
5._GC-01-114-6-11
__CCCTCCGGCCCTGGCCAACTAGX_XX_X
6._GC-01-114-6-11
__CCCTCCGGCCCTGGCCAACTAGX_XX_X
7._GC-01-114-6-11
__CCCTCCGGCCCTGGCCAACTAGX_XX_X
8._GC-01-114-6-11
__CCCTCCGGCCCTGGCCAACTAGX_XX_X
9._GC-01-114-6-11
__CCCTCCGGCCCTGGCCAACTAGX_XX_X
10._GC-01-114-6-11
__CCCTCCGGCCCTGGCCAACTAGX_XX_X
11._POUND_7_/B
__CCCT______CTGG__AACTAGX_XX_X
12._POUND_7_/B
__CCCT______CTGG__AACTAGX_XX_X
13._POUND_7_/B
__CCCT______CTGG__AACTAGX_XX_X
14._POUND_7_/B
__CCCT______CTGG__AACTAGX_XX_X
15._POUND_7_/B
__CCCT______CTGG__AACTAGX_XX_X
16._POUND_7_/B
__CCCT______CTGG__AACTAGX_XX_X
17._POUND_7_/B
__CCCT______CTGG__AACTAGX_XX_X
18._POUND_7_/B
__CCCT______CTGG__AACTAGX_XX_X
19._POUND_7_/B
__CCCT______CTGG__AACTAGX_XX_X
20._RUQ_24
__CCCT______CTGG__AACTAGX_XX_X
21._RUQ_24
__CC______CC__________AGX_XX_X

Input profile: POUND_7_/B RUQ_24

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._POUND_7_/B RUQ_24

62.5 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._POUND_7_/B RUQ_24B

62.5 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

3._POUND_7_/B GC-01-114-6-11

50.6 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP4
 Mars, 2018

4._POUND_7_/B GC-01-114-6-11

50 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

5._POUND_7_/B GC-01-114-6-11

50 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._POUND_7_/B GC-01-114-6-11

50 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

7._POUND_7_/B GC-01-114-6-11

50 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

8._POUND_7_/B GC-01-114-6-11

50 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

9._POUND_7_/B GC-01-114-6-11

50 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

10._POUND_7_/B GC-01-114-6-11

49.4 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

11._POUND_7_/B

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 9
 Dapeng Zhang, 2016

12._POUND_7_/B

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 4 > FP
 Dapeng Zhang, 2016

13._POUND_7_/B

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 11 > F
 Dapeng Zhang, 2016

14._POUND_7_/B

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 10 > F
 Dapeng Zhang, 2016

15._POUND_7_/B

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 1 > FP
 Dapeng Zhang, 2016

16._POUND_7_/B

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 13
 Dapeng Zhang, 2016

17._POUND_7_/B

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 3
 Dapeng Zhang, 2016

18._POUND_7_/B

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

19._POUND_7_/B

48.6 %
35 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F407 T3
 Dapeng Zhang, 2016

20._POUND_7_/B RUQ_24

47.1 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

21._POUND_7_/B RUQ_24

45.7 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998