SNP Profiles of PA 7 [PER]   View Data

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 Key

 1234567891011121314
_Input profile
ACACAGACAAGGGGCCAAGGGGAAAGAC
1._RUQ_113
____________GG______________
2._RUQ_113
__________CCGG__AA__________
3._PA_7_[PER]
__________CCGG__AA__________
4._PA_7_[PER]
__________CCGG__AA__________
5._PA_7_[PER]
__________CCGG__AA__________
6._PA_7_[PER]
__________CCGG__AA__________
7._PA_7_[PER]
__________CCGG__AA__________
8._PA_7_[PER]
__________CCGG__AA__________
9._PA_7_[PER]
__________CCGG__AA__________
10._PA_7_[PER]
__________CCGG__AA__________
11._GC-04-030-2-12
ACACAGACTTCCGGGGAACCGGTTCTGT
12._GC-04-030-2-12
ACACAGACTTCCGGGGAACCGGTTCTGT
13._GC-04-030-2-12
ACACAGACTTCCGGGGAACCGGTTCTGT
14._GC-04-030-2-12
ACACAGACTTCCGGGGAACCGGTTCTGT
15._GC-04-030-2-12
ACACAGACTTCCGGGGAACCGGTTCTGT
16._RUQ_113
__________CC__GG____GG______
 1516171819202122232425262728
_Input profile
AAAAAGAGCCGGAAGGAAAGCGAGCCAG
1._RUQ_113
__TT____________AA__CG______
2._RUQ_113
__TTCT__CC__TT__AACTCGAGGGCT
3._PA_7_[PER]
__TTCT__CC__TT__AACTCGAGGGCT
4._PA_7_[PER]
__TTCT__CC__TT__AACTCGAGGGCT
5._PA_7_[PER]
__TTCT__CC__TT__AACTCGAGGGCT
6._PA_7_[PER]
__TTCT__CC__TT__AACTCGAGGGCT
7._PA_7_[PER]
__TTCT__CC__TT__AACTCGAGGGCT
8._PA_7_[PER]
__TTCT__CC__TT__AACTCGAGGGCT
9._PA_7_[PER]
__TTCT__CC__TT__AACTCGAGGGCT
10._PA_7_[PER]
__TTCT__CC__TT__AACTCGAGGGCT
11._GC-04-030-2-12
TTTTCTTTCCGGTTCCAACTCGAGGGCT
12._GC-04-030-2-12
TTTTCTTTCCGGTTCCAACTCGAGGGCT
13._GC-04-030-2-12
TTTTCTTTCCGGTTCCAACTCGAGGGCT
14._GC-04-030-2-12
TTTTCTTTCCGGTTCCAACTCGAGGGCT
15._GC-04-030-2-12
TTTTCTTTCCGGTTCCAACTCGAGGGCT
16._RUQ_113
__TT__CT______CCAACTCGAGGGCT
 2930313233343536373839404142
_Input profile
AGTTGGACGGAGGGGGGGCCTTATGGGG
1._RUQ_113
__________AG____________GG__
2._RUQ_113
CT____ACCCAG__CCGG____AT____
3._PA_7_[PER]
CT____ACCCAG__CCGG____AT____
4._PA_7_[PER]
CT____ACCCAG__CCGG____AT____
5._PA_7_[PER]
CT____ACCCAG__CCGG____AT____
6._PA_7_[PER]
CT____AACCAG__CCGG____AT____
7._PA_7_[PER]
CT____AACCAG__CCGG____AT____
8._PA_7_[PER]
CT____AACCAG__CCGG____AT____
9._PA_7_[PER]
CT____AACCAG__CCGG____AT____
10._PA_7_[PER]
CT____AACCAG__CCGG____AT____
11._GC-04-030-2-12
CTAAGGAACCAGGGCCGGGGAAATGGGG
12._GC-04-030-2-12
CTAAGGAACCAGGGCCGGGGAAATGGGG
13._GC-04-030-2-12
CTAAGGAACCAGGGCCGGGGAAATGGGG
14._GC-04-030-2-12
CTAAGGAACCAGGGCCGGGGAAATGGGG
15._GC-04-030-2-12
CTAAGGAACCAGGGCCGGGGAAATGGGG
16._RUQ_113
____GGACCCAG__CC________GGGG
 4344454647484950515253545556
_Input profile
AAAGAAGGGGAAGGGGCCAAAAACAGGG
1._RUQ_113
__________________AA______GG
2._RUQ_113
AA______GG________AA__GT__GG
3._PA_7_[PER]
AA______GG________AA__GT__GG
4._PA_7_[PER]
AA______GG________AA__GT__GG
5._PA_7_[PER]
AA______GG________AA__GT__GG
6._PA_7_[PER]
AA______GG________AA__GT__GG
7._PA_7_[PER]
AA______GG________AA__GT__GG
8._PA_7_[PER]
AA______GG________AA__GT__GG
9._PA_7_[PER]
AA______GG________AA__GT__GG
10._PA_7_[PER]
AA______GG________AA__GT__GG
11._GC-04-030-2-12
AACTAAGGGGAACC__CCAAAAGTAGGG
12._GC-04-030-2-12
AACTAAGGGGAACC__CCAAAAGTAGGG
13._GC-04-030-2-12
AACTAAGGGGAACC__CCAAAAGTAGGG
14._GC-04-030-2-12
AACTAAGGGGAACC__CCAAAAGTAGGG
15._GC-04-030-2-12
AACTAAGGGGAACC__CCAAAAGTAGGG
16._RUQ_113
AA__________CC____AA__GT__GG
 5758596061626364656667686970
_Input profile
CCGGGGAAAGAACCAGAAACCCAAAACC
1._RUQ_113
CC__CC______GGAG________AATT
2._RUQ_113
CC____TT____GG______________
3._PA_7_[PER]
CC____TT____GG______________
4._PA_7_[PER]
CC____TT____GG______________
5._PA_7_[PER]
CC____TT____GG______________
6._PA_7_[PER]
CC____TT____GG______________
7._PA_7_[PER]
CC____TT____GG______________
8._PA_7_[PER]
CC____TT____GG______________
9._PA_7_[PER]
CC____TT____GG______________
10._PA_7_[PER]
CC____TT____GG______________
11._GC-04-030-2-12
CCCCCCTTAAAAGGAGTTGTGGTTAAGG
12._GC-04-030-2-12
CCCCCCTTAAAAGGAGTTGTGGTTAAGG
13._GC-04-030-2-12
CCCCCCTTAAAAGGAGTTGTGGTTAAGG
14._GC-04-030-2-12
CCCCCCTTAAAAGGAGTTGTGGTTAAGG
15._GC-04-030-2-12
CCCCCCTTAAAAGGAGTTGTGGTTAAGG
16._RUQ_113
CC__CCTT____GGAGTT____TTAA__
 717273747576777879808182  
_Input profile
GGCCGGGGGGCCGGCCGGAAGGAGX_XX_X
1._RUQ_113
__GG____GG____________AGX_XX_X
2._RUQ_113
__GGCC______CCCC__AACCAGX_XX_X
3._PA_7_[PER]
__GGCC______CCCC__AACCAGX_XX_X
4._PA_7_[PER]
__GGCC______CCCC__AACCAGX_XX_X
5._PA_7_[PER]
__GGCC______CCCC__AACCAGX_XX_X
6._PA_7_[PER]
__GGCC______CCCC__AACCAGX_XX_X
7._PA_7_[PER]
__GGCC______CCCC__AACCAGX_XX_X
8._PA_7_[PER]
__GGCC______CCCC__AACCAGX_XX_X
9._PA_7_[PER]
__GGCC______CCCC__AACCAGX_XX_X
10._PA_7_[PER]
__GGCC______CCCC__AACCAGX_XX_X
11._GC-04-030-2-12
__GGCCCCGGCCCCCCCCAACCAGX_XX_X
12._GC-04-030-2-12
__GGCCCCGGCCCCCCCCAACCAGX_XX_X
13._GC-04-030-2-12
__GGCCCCGGCCCCCCCCAACCAGX_XX_X
14._GC-04-030-2-12
__GGCCCCGGCCCCCCCCAACCAGX_XX_X
15._GC-04-030-2-12
__GGCCCCGGCCCCCCCCAACCAGX_XX_X
16._RUQ_113
__GGCC__GGCC__________AGX_XX_X

Input profile: PA_7_[PER] RUQ_113

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._PA_7_[PER] RUQ_113

70.6 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._PA_7_[PER] RUQ_113

51.4 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

3._PA_7_[PER]

51.4 %
35 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P61 842
 Dapeng Zhang, 2016

4._PA_7_[PER]

51.4 %
35 shared markers

Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 185 I-033
 Dapeng Zhang, 2016

5._PA_7_[PER]

51.4 %
35 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Row 2 C0214 27
 Dapeng Zhang, 2016

6._PA_7_[PER]

50 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4212 7 > FP
 Dapeng Zhang, 2016

7._PA_7_[PER]

50 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4212 8
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

8._PA_7_[PER]

50 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4212 1 > FP
 Dapeng Zhang, 2016

9._PA_7_[PER]

50 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4212 2 > FP
 Dapeng Zhang, 2016

10._PA_7_[PER]

50 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4212 3 > FP
 Dapeng Zhang, 2016

11._PA_7_[PER] GC-04-030-2-12

48.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

12._PA_7_[PER] GC-04-030-2-12

48.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP2
 Mars, 2018

13._PA_7_[PER] GC-04-030-2-12

48.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

14._PA_7_[PER] GC-04-030-2-12

48.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

15._PA_7_[PER] GC-04-030-2-12

48.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

16._PA_7_[PER] RUQ_113

48.6 %
37 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998