SNP Profiles of PA 156 [PER]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCAGAAAAGGGGCCAAGGGGAAAGAC
1._RUQ_1531
____________GG______________
2._PA156[PER]
__________CC________GG______
3._PA_156_[PER]
__________CCGG__AA__________
4._PA_156_[PER]
__________CCGG__AA__________
5._GC-05-137-3-39
AACCAGAATTCCGGGGAACCGGTTCTGT
6._GC-05-137-3-39
AACCAGAATTCCGGGGAACCGGTTCTGT
7._GC-05-137-3-39
AACCAGAATTCCGGGGAACCGGTTCTGT
8._GC-05-137-3-39
AACCAGAATTCCGGGGAACCGGTTCTGT
9._PA_156_[PER]
__________CCGG__AA__________
10._PA_156_[PER]
__________CCGG__AA__________
11._PA_156_[PER]
__________CCGG__AA__________
12._PA_156_[PER]
__________CCGG__AA__________
13._RUQ_1531
__________CCGG__AA__________
14._PA_156_[PER]
__________CCGG__AA__________
15._GC-05-137-3-39
AACCAGAATTCCGGGGAACCGGTTCTGT
16._RUQ_1531
__________CC__GG____GG______
17._GC-05-138-3-40
ACAAAAAATTCCAAGGAACCAGTTCCGG
18._GC-05-138-3-40
ACAAAAAATTCCAAGGAACCAGTTCCGG
19._GC-05-138-3-40
ACAAAAAATTCCAAGGAACCAGTTCCGG
20._GC-05-138-3-40
ACAAAAAATTCCAAGGAACCAGTTCCGG
21._GC-05-138-3-40
ACAAAAAATTCCAAGGAACCAGTTCCGG
22._PA_156_[PER]
__________CCAA__AA__________
23._PA_156_[PER]
__________CCAA__AA__________
24._PA_156_[PER]
__________CCAA__AA__________
25._PA_156_[PER]
__________CCAA__AA__________
26._PA_156_[PER]
__________CCAA__AA__________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAAAACCGGAAAGACAGCCAGCCGG
1._RUQ_1531
__TT____________AC__GG______
2._PA156[PER]
______________CTAC__CC____CC
3._PA_156_[PER]
__TTTT__CC__TT__ACCTGGAGGG__
4._PA_156_[PER]
__TTTT__CC__TT__ACCTGGAGGGCC
5._GC-05-137-3-39
TTTTTTTTCCGGTTCTACCTGGAGGGCC
6._GC-05-137-3-39
TTTTTTTTCCGGTTCTACCTGGAGGG__
7._GC-05-137-3-39
TTTTTTTTCCGGTTCTACCTGGAGGGCC
8._GC-05-137-3-39
TTTTTTTTCCGGTTCTACCTGGAGGGCC
9._PA_156_[PER]
__TTTT__CC__TT__ACCTGGAGGGCC
10._PA_156_[PER]
__TTTT__CC__TT__ACCTGGAGGGCC
11._PA_156_[PER]
__TTTT__CC__TT__ACCTGGAGGGCC
12._PA_156_[PER]
__TTTT__CC__TT__ACCTGGAGGGCC
13._RUQ_1531
__TTTT__CC__TT__ACCTGGAGGGCC
14._PA_156_[PER]
__TTTT__CC__TT__ACCTGGAGGGCC
15._GC-05-137-3-39
TTTTTTTTCCGGTTCTACCTGGAGGGCC
16._RUQ_1531
__TT__TT______CTACCTGGAGGGCC
17._GC-05-138-3-40
CTTTCTTTAAGGTTCTAACTGGAGTT__
18._GC-05-138-3-40
CTTTCTTTAAGGTTCTAACTGGAGTTCC
19._GC-05-138-3-40
CTTTCTTTAAGGTTCTAACTGGAGTTCC
20._GC-05-138-3-40
CTTTCTTTAAGGTTCTAACTGGAGTTCC
21._GC-05-138-3-40
CTTTCTTTAAGGTTCTAACTGGAGTTCC
22._PA_156_[PER]
__TTCT__AA__TT__AACTGGAGTT__
23._PA_156_[PER]
__TTCT__AA__TT__AACTGGAGTTCC
24._PA_156_[PER]
__TTCT__AA__TT__AACTGGAGTTCC
25._PA_156_[PER]
__TTCT__AA__TT__AACTGGAGTTCC
26._PA_156_[PER]
__TTCT__AA__TT__AACTGGAGTTCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGTTGGAAGGAAGGGGGGCCTTATGGGG
1._RUQ_1531
__________AA____________GG__
2._PA156[PER]
____GGAAGGAA______________GG
3._PA_156_[PER]
CC____AACCAA__CCGG____AT____
4._PA_156_[PER]
CC____AA__AA__CCGG____AT____
5._GC-05-137-3-39
CCAAGGAACCAAGGCCGGGGAAATGGGG
6._GC-05-137-3-39
CCAAGGAACCAAGGCCGGGGAAATGGGG
7._GC-05-137-3-39
CCAAGGAACCAAGGCCGGGGAAATGGGG
8._GC-05-137-3-39
CCAAGGAACCAAGGCCGGGGAAATGGGG
9._PA_156_[PER]
CC____AACCAA__CCGG____AT____
10._PA_156_[PER]
CC____AACCAA__CCGG____AT____
11._PA_156_[PER]
CC____AACCAA__CCGG____AT____
12._PA_156_[PER]
CC____AACCAA__CCGG____AT____
13._RUQ_1531
CC____AACCAA__CCGG____AT____
14._PA_156_[PER]
CC____AACCAA__CCGG____AT____
15._GC-05-137-3-39
CCAAGGAACCAAGGCCGGGGAAATGGGG
16._RUQ_1531
____GGAACCAA__CC________GGGG
17._GC-05-138-3-40
CTATGGAACCAAGGCTGGGGAAATGGGG
18._GC-05-138-3-40
CTATGGAACCAAGGCTGGGGAAATGGGG
19._GC-05-138-3-40
CTATGGAACCAAGGCTGGGGAAATGGGG
20._GC-05-138-3-40
CTATGGAACCAAGGCTGGGGAAATGGGG
21._GC-05-138-3-40
CTATGGAACCAAGGCTGGGGAAATGGGG
22._PA_156_[PER]
CT____AACCAA__CTGG____AT____
23._PA_156_[PER]
CT____AACCAA__CTGG____AT____
24._PA_156_[PER]
CT____AACCAA__CTGG____AT____
25._PA_156_[PER]
CT____AACCAA__CTGG____AT____
26._PA_156_[PER]
CT____AACCAA__CTGG____AT____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAAAAGGGGGATGGGGCCACAGAAGGCG
1._RUQ_1531
__________________AC______CG
2._PA156[PER]
AATT________CC____________CG
3._PA_156_[PER]
AA______GG________AC__TT__CG
4._PA_156_[PER]
AA______GG________AC__TT__CG
5._GC-05-137-3-39
AATTAGGGGGATCC__CCACAGTTGGCG
6._GC-05-137-3-39
AATTAGGGGGATCC__CCACAGTTGGCG
7._GC-05-137-3-39
AATTAGGGGGATCC__CCACAGTTGGCG
8._GC-05-137-3-39
AATTAGGGGGATCC__CCACAGTTGGCG
9._PA_156_[PER]
AA______GG________AC__TT__CG
10._PA_156_[PER]
AA______GG________AC__TT__CG
11._PA_156_[PER]
AA______GG________AC__TT__CG
12._PA_156_[PER]
AA______GG________AC__TT__CG
13._RUQ_1531
AA______GG________AC__TT__CG
14._PA_156_[PER]
AA______GG________AC__TT__CG
15._GC-05-137-3-39
AATTAGGGGGATCC__CCACAGTTAGCG
16._RUQ_1531
AA__________CC____AC__TT__CG
17._GC-05-138-3-40
AACTGGGGGGATCC__CCCCGGGTAGCG
18._GC-05-138-3-40
AACTGGGGGGATCC__CCCCGGGTAGCG
19._GC-05-138-3-40
AACTGGGGGGATCC__CCCCGGGTAGCG
20._GC-05-138-3-40
AACTGGGGGGATCC__CCCCGGGTAGCG
21._GC-05-138-3-40
AACTGGGGGGATCC__CCCCGGGTAGCG
22._PA_156_[PER]
AA______GG________CC__GT__CG
23._PA_156_[PER]
AA______GG________CC__GT__CG
24._PA_156_[PER]
AA______GG________CC__GT__CG
25._PA_156_[PER]
AA______GG________CC__GT__CG
26._PA_156_[PER]
AA______GG________CC__GT__CG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCGGAAAAAAAACCGGAAAACCAAACGG
1._RUQ_1531
CC__TT______GGGG________ACTT
2._PA156[PER]
CC__TT____________TT________
3._PA_156_[PER]
CC____TT____GG______________
4._PA_156_[PER]
CC____TT____GG______________
5._GC-05-137-3-39
CCCCTTTTAAAAGGGGTTTTGGTTAC__
6._GC-05-137-3-39
CCCCTTTTAAAAGGGGTTTTGGTTACCC
7._GC-05-137-3-39
CCCCTTTTAAAAGGGGTTTTGGTTACCC
8._GC-05-137-3-39
CCCCTTTTAAAAGGGGTTTTGGTTACCC
9._PA_156_[PER]
CC____TT____GG______________
10._PA_156_[PER]
CC____TT____GG______________
11._PA_156_[PER]
CC____TT____GG______________
12._PA_156_[PER]
CC____TT____GG______________
13._RUQ_1531
CC____TT____GG______________
14._PA_156_[PER]
CC____TT____GG______________
15._GC-05-137-3-39
CCCCTTTTAAAAGGGGTTTTGGTTACCC
16._RUQ_1531
CC__TTTT____GGGGTT____TTAC__
17._GC-05-138-3-40
AACCCTCTAAAAGGGGTTTTTTTTAAGG
18._GC-05-138-3-40
AACCCTCTAAAAGGGGTTTTTTTTAAGG
19._GC-05-138-3-40
AACCCTCTAAAAGGGGTTTTTTTTAAGG
20._GC-05-138-3-40
AACCCTCTAAAAGGGGTTTTTTTTAAGG
21._GC-05-138-3-40
AACCCTCTAAAAGGGGTTTTTTTTAAGG
22._PA_156_[PER]
AA____CT____GG______________
23._PA_156_[PER]
AA____CT____GG______________
24._PA_156_[PER]
AA____CT____GG______________
25._PA_156_[PER]
AA____CT____GG______________
26._PA_156_[PER]
AA____CT____GG______________
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
GGCCGGGGAGCCAACGGGAAGGAGX_XX_X
1._RUQ_1531
__GG____AG____________AGX_XX_X
2._PA156[PER]
GGCCCC______________CC__X_XX_X
3._PA_156_[PER]
__GGCC______TTCG__AACCAGX_XX_X
4._PA_156_[PER]
__GGCC______TTCG__AACCAGX_XX_X
5._GC-05-137-3-39
__GGCCCCAGCCTTCGCCAACCAGX_XX_X
6._GC-05-137-3-39
__GGCCCCAGCCTTCGCCAACCAGX_XX_X
7._GC-05-137-3-39
__GGCCCCAGCCTTCGCCAACCAGX_XX_X
8._GC-05-137-3-39
__GGCCCCAGCCTTCGCCAACCAGX_XX_X
9._PA_156_[PER]
__GGCC______TTCG__AACCAGX_XX_X
10._PA_156_[PER]
__GGCC______TTCG__AACCAGX_XX_X
11._PA_156_[PER]
__GGCC______TTCG__AACCAGX_XX_X
12._PA_156_[PER]
__GGCC______TTCG__AACCAGX_XX_X
13._RUQ_1531
__GGCC______TTCG__AACCAGX_XX_X
14._PA_156_[PER]
__GGCC______TTCG__AACCAGX_XX_X
15._GC-05-137-3-39
__GGCCCCAGCCTTCGCCAACCAGX_XX_X
16._RUQ_1531
__GGCC__GGCC__________AGX_XX_X
17._GC-05-138-3-40
__CGCTCCAACCCTCGCCAATTAGX_XX_X
18._GC-05-138-3-40
__CGCTCCAACCCTCGCCAATTAGX_XX_X
19._GC-05-138-3-40
__CGCTCCAACCCTCGCCAATTAGX_XX_X
20._GC-05-138-3-40
__CGCTCCAACCCTCGCCAATTAGX_XX_X
21._GC-05-138-3-40
__CGCTCCAACCCTCGCCAATTAGX_XX_X
22._PA_156_[PER]
__CGCT______CTCG__AATTAGX_XX_X
23._PA_156_[PER]
__CGCT______CTCG__AATTAGX_XX_X
24._PA_156_[PER]
__CGCT______CTCG__AATTAGX_XX_X
25._PA_156_[PER]
__CGCT______CTCG__AATTAGX_XX_X
26._PA_156_[PER]
__CGCT______CTCG__AATTAGX_XX_X

Input profile: PA_156_[PER] RUQ_1531

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._PA_156_[PER] RUQ_1531

64.7 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Par
0.972

2._PA_156_[PER] PA156[PER]

59.1 %
22 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

3._PA_156_[PER]

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 1
 Dapeng Zhang, 2016

4._PA_156_[PER]

50 %
34 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D295 T1
 Dapeng Zhang, 2016

5._PA_156_[PER] GC-05-137-3-39

49.4 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

6._PA_156_[PER] GC-05-137-3-39

49.4 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

7._PA_156_[PER] GC-05-137-3-39

48.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

8._PA_156_[PER] GC-05-137-3-39

48.8 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

9._PA_156_[PER]

48.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 2
 Dapeng Zhang, 2016

10._PA_156_[PER]

48.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 3 > FP
 Dapeng Zhang, 2016

11._PA_156_[PER]

48.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 4 > FP
 Dapeng Zhang, 2016

12._PA_156_[PER]

48.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 5 > FP
 Dapeng Zhang, 2016

13._PA_156_[PER] RUQ_1531

48.6 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

14._PA_156_[PER]

48.6 %
35 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row1 C0184 28
 Dapeng Zhang, 2016

15._PA_156_[PER] GC-05-137-3-39

48.1 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

16._PA_156_[PER] RUQ_1531

44.6 %
37 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._PA_156_[PER] GC-05-138-3-40

40.5 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

18._PA_156_[PER] GC-05-138-3-40

40 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

19._PA_156_[PER] GC-05-138-3-40

40 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

20._PA_156_[PER] GC-05-138-3-40

40 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

21._PA_156_[PER] GC-05-138-3-40

40 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

22._PA_156_[PER]

39.7 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 2 > FP
 Dapeng Zhang, 2016

23._PA_156_[PER]

38.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 3 > FP
 Dapeng Zhang, 2016

24._PA_156_[PER]

38.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 4
 Dapeng Zhang, 2016

25._PA_156_[PER]

38.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 5
 Dapeng Zhang, 2016

26._PA_156_[PER]

38.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 1 > FP
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998