SNP Profiles of PA 121 [PER] View Data

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_Input profile	CC	CC	AA	AC	AA	GG	GG	CC	AA	GG	GG	AA	AG	AC
1._RUQ_1059	__	__	__	__	__	__	GG	__	__	__	__	__	__	__
2._RUQ_1059	__	__	__	__	__	CC	__	__	__	__	GG	__	__	__
3._GC-05-011-1-11	CC	CC	AA	AC	TT	CC	GG	GG	AA	CC	GG	TT	CT	GT
4._GC-05-011-1-11	CC	CC	AA	AC	TT	CC	GG	GG	AA	CC	GG	TT	CT	GT
5._GC-05-011-1-11	CC	CC	AA	AC	TT	CC	GG	GG	AA	CC	GG	TT	CT	GT
6._PA_121_[PER]	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
7._PA_121_[PER]	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
8._PA_121_[PER]	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
9._PA_121_[PER]	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
10._RUQ_1059	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
11._PA_121_[PER]	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
12._PA_121_[PER]	__	__	__	__	__	CC	GG	__	AA	__	__	__	__	__
13._RUQ_1059	__	__	__	__	__	CC	__	GG	__	__	GG	__	__	__
14._GC-05-011-1-11	AC	AC	AG	AA	TT	CC	AG	GG	AT	CC	AA	CC	TT	GG
15._GC-05-011-1-11	CC	CC	AG	CC	TT	CC	AG	TT	TT	TT	AG	CC	TT	TT
16._PA_121_[PER]	__	__	__	__	__	CC	AG	__	AT	__	__	__	__	__
17._PA_121_[PER]	__	__	__	__	__	CC	AG	__	TT	__	__	__	__	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	AA	GG	AC	GG	AA	AG	AC	AG	CC	GG	AC	GG
1._RUQ_1059	__	TT	__	__	__	__	__	__	AC	__	GG	__	__	__
2._RUQ_1059	__	__	__	__	__	__	__	CT	AC	__	CC	__	__	CC
3._GC-05-011-1-11	TT	TT	TT	__	AC	GG	TT	CT	AC	CT	GG	GG	GT	__
4._GC-05-011-1-11	TT	TT	TT	__	AC	GG	TT	CT	AC	CT	GG	GG	GT	CC
5._GC-05-011-1-11	TT	TT	TT	__	AC	GG	TT	CT	AC	CT	GG	GG	GT	CC
6._PA_121_[PER]	__	TT	TT	__	AC	__	TT	__	AC	CT	GG	GG	GT	__
7._PA_121_[PER]	__	TT	TT	__	AC	__	TT	__	AC	CT	GG	GG	GT	CC
8._PA_121_[PER]	__	TT	TT	__	AC	__	TT	__	AC	CT	GG	GG	GT	CC
9._PA_121_[PER]	__	TT	TT	__	AC	__	TT	__	AC	CT	GG	GG	GT	CC
10._RUQ_1059	__	TT	TT	__	AC	__	TT	__	AC	CT	GG	GG	GT	CC
11._PA_121_[PER]	__	TT	TT	__	AC	__	TT	__	AC	CT	GG	GG	GT	CC
12._PA_121_[PER]	__	TT	TT	__	AC	__	TT	__	AC	CT	GG	GG	GT	CC
13._RUQ_1059	__	TT	__	CC	__	__	__	CT	AC	CT	GG	GG	GT	CC
14._GC-05-011-1-11	CC	TT	CT	TT	AA	GG	CT	TT	CC	CT	CG	AG	TT	TT
15._GC-05-011-1-11	TT	GT	CC	TT	__	GG	TT	TT	CC	CT	CG	GG	GT	CT
16._PA_121_[PER]	__	TT	CT	__	AA	__	CT	__	CC	CT	CG	AG	TT	TT
17._PA_121_[PER]	__	GT	CC	__	__	__	TT	__	CC	CT	CG	GG	GT	CT

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AG	TT	GG	AA	GG	AA	GG	GG	GG	CC	TT	AT	GG	GG
1._RUQ_1059	__	__	__	__	__	AA	__	__	__	__	__	__	GG	__
2._RUQ_1059	__	__	GG	AA	GG	AA	__	__	__	__	__	__	__	GG
3._GC-05-011-1-11	CT	AA	GG	AA	CC	AA	GG	CC	GG	GG	AA	AT	GG	GG
4._GC-05-011-1-11	CT	AA	GG	AA	CC	AA	GG	CC	GG	GG	AA	AT	GG	GG
5._GC-05-011-1-11	CT	AA	GG	AA	CC	AA	GG	CC	GG	GG	AA	AT	GG	GG
6._PA_121_[PER]	CT	__	__	AA	CC	AA	__	CC	GG	__	__	AT	__	__
7._PA_121_[PER]	CT	__	__	AA	__	AA	__	CC	GG	__	__	AT	__	__
8._PA_121_[PER]	CT	__	__	AA	CC	AA	__	CC	GG	__	__	AT	__	__
9._PA_121_[PER]	CT	__	__	AA	CC	AA	__	CC	GG	__	__	AT	__	__
10._RUQ_1059	CT	__	__	AA	CC	AA	__	CC	GG	__	__	AT	__	__
11._PA_121_[PER]	CT	__	__	AA	CC	AA	__	CC	GG	__	__	AT	__	__
12._PA_121_[PER]	CT	__	__	AA	CC	AA	__	CC	GG	__	__	AT	__	__
13._RUQ_1059	__	__	GG	AA	CC	AA	__	CC	__	__	__	__	GG	GG
14._GC-05-011-1-11	CT	AA	GG	AA	CC	AA	GG	CC	CG	GG	AA	TT	GG	GG
15._GC-05-011-1-11	CC	AT	GG	AA	CC	AA	GG	CC	GG	GG	TT	AA	GG	GG
16._PA_121_[PER]	CT	__	__	AA	CC	AA	__	CC	CG	__	__	TT	__	__
17._PA_121_[PER]	CC	__	__	AA	CC	AA	__	CC	GG	__	__	AA	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AA	AG	AG	GG	GG	AT	GG	CC	AA	AA	CC	AG	CG	CC
1._RUQ_1059	__	__	__	__	__	__	__	__	AA	__	__	__	CG	CC
2._RUQ_1059	AA	CT	__	__	__	__	CC	__	__	__	__	__	CG	CC
3._GC-05-011-1-11	AA	CT	AG	GG	GG	AT	CC	CC	AA	AA	GG	AG	CG	CC
4._GC-05-011-1-11	AA	CT	AG	GG	GG	AT	CC	CC	AA	AA	GG	AG	CG	CC
5._GC-05-011-1-11	AA	CT	AG	GG	GG	AT	CC	CC	AA	AA	GG	AG	CG	CC
6._PA_121_[PER]	AA	__	__	__	GG	__	__	__	AA	__	GG	__	CG	CC
7._PA_121_[PER]	AA	__	__	__	GG	__	__	__	AA	__	GG	__	CG	CC
8._PA_121_[PER]	AA	__	__	__	GG	__	__	__	AA	__	GG	__	CG	CC
9._PA_121_[PER]	AA	__	__	__	GG	__	__	__	AA	__	GG	__	CG	CC
10._RUQ_1059	AA	__	__	__	GG	__	__	__	AA	__	GG	__	CG	CC
11._PA_121_[PER]	AA	__	__	__	GG	__	__	__	AA	__	GG	__	CG	CC
12._PA_121_[PER]	AA	__	__	__	GG	__	__	__	AA	__	GG	__	CG	CC
13._RUQ_1059	AA	__	__	__	__	__	CC	__	AA	__	GG	__	CG	CC
14._GC-05-011-1-11	AA	CT	GG	AG	AG	AA	CC	CC	CC	GG	GT	AA	CC	CC
15._GC-05-011-1-11	TT	CC	AA	AA	AG	AA	CC	AA	CC	AG	GT	GG	GG	CC
16._PA_121_[PER]	AA	__	__	__	AG	__	__	__	CC	__	GT	__	CC	CC
17._PA_121_[PER]	TT	__	__	__	AG	__	__	__	CC	__	GT	__	GG	CC

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	GG	AA	AA	AA	AA	CC	AG	AA	AA	CC	AA	AA	CG	GG
1._RUQ_1059	__	TT	__	__	__	GG	AG	__	__	__	__	AA	TT	__
2._RUQ_1059	__	TT	__	__	__	__	__	__	TT	__	__	__	__	GG
3._GC-05-011-1-11	CC	TT	TT	AA	AA	GG	AG	TT	TT	GG	TT	AA	CG	__
4._GC-05-011-1-11	CC	TT	TT	AA	AA	GG	AG	TT	TT	GG	TT	AA	CG	__
5._GC-05-011-1-11	CC	TT	TT	AA	AA	GG	AG	TT	TT	GG	TT	AA	CG	__
6._PA_121_[PER]	__	__	TT	__	__	GG	__	__	__	__	__	__	__	__
7._PA_121_[PER]	__	__	TT	__	__	GG	__	__	__	__	__	__	__	__
8._PA_121_[PER]	__	__	TT	__	__	GG	__	__	__	__	__	__	__	__
9._PA_121_[PER]	__	__	TT	__	__	GG	__	__	__	__	__	__	__	__
10._RUQ_1059	__	__	TT	__	__	GG	__	__	__	__	__	__	__	__
11._PA_121_[PER]	__	__	TT	__	__	GG	__	__	__	__	__	__	__	__
12._PA_121_[PER]	__	__	TT	__	__	GG	__	__	__	__	__	__	__	__
13._RUQ_1059	__	TT	TT	__	__	GG	AG	TT	__	__	TT	AA	__	__
14._GC-05-011-1-11	CC	TT	TT	AA	AA	GG	AG	TT	TT	__	TT	AA	CG	AA
15._GC-05-011-1-11	CC	CT	CC	AA	GG	GT	AG	TT	TT	TT	TT	CC	CG	AA
16._PA_121_[PER]	__	__	TT	__	__	GG	__	__	__	__	__	__	__	__
17._PA_121_[PER]	__	__	CC	__	__	GT	__	__	__	__	__	__	__	__

	71	72	73	74	75	76	77	78	79	80	81
_Input profile	CC	GG	GG	GG	CC	AA	CG	GG	AA	AA	AG	X_X	X_X	X_X
1._RUQ_1059	GG	__	__	GG	__	__	__	__	__	__	AG	X_X	X_X	X_X
2._RUQ_1059	CC	CC	__	__	__	__	__	__	__	TT	__	X_X	X_X	X_X
3._GC-05-011-1-11	GG	CC	CC	GG	CC	TT	CG	CC	AA	TT	AG	X_X	X_X	X_X
4._GC-05-011-1-11	GG	CC	CC	GG	CC	TT	CG	CC	AA	TT	AG	X_X	X_X	X_X
5._GC-05-011-1-11	GG	CC	CC	GG	CC	TT	CG	CC	AA	TT	AG	X_X	X_X	X_X
6._PA_121_[PER]	GG	CC	__	__	__	TT	CG	__	AA	TT	AG	X_X	X_X	X_X
7._PA_121_[PER]	GG	CC	__	__	__	TT	CG	__	AA	TT	AG	X_X	X_X	X_X
8._PA_121_[PER]	GG	CC	__	__	__	TT	CG	__	AA	TT	AG	X_X	X_X	X_X
9._PA_121_[PER]	GG	CC	__	__	__	TT	CG	__	AA	TT	AG	X_X	X_X	X_X
10._RUQ_1059	GG	CC	__	__	__	TT	CG	__	AA	TT	AG	X_X	X_X	X_X
11._PA_121_[PER]	GG	CC	__	__	__	TT	CG	__	AA	TT	AG	X_X	X_X	X_X
12._PA_121_[PER]	GG	CC	__	__	__	TT	CG	__	AA	TT	AG	X_X	X_X	X_X
13._RUQ_1059	GG	CC	__	__	CC	__	__	__	__	__	AG	X_X	X_X	X_X
14._GC-05-011-1-11	GG	CC	CG	AA	CC	CT	GG	CC	AA	TT	AG	X_X	X_X	X_X
15._GC-05-011-1-11	GG	TT	GG	AG	CC	CT	GG	CT	AA	CT	AG	X_X	X_X	X_X
16._PA_121_[PER]	GG	CC	__	__	__	CT	GG	__	AA	TT	AG	X_X	X_X	X_X
17._PA_121_[PER]	GG	TT	__	__	__	CT	GG	__	AA	CT	AG	X_X	X_X	X_X

Input profile: PA_121_[PER] RUQ_1059

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

1._PA_121_[PER] RUQ_1059

64.7 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

2._PA_121_[PER] RUQ_1059

59.1 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: GBR207

Jocelyn De Wever et al., 2019

3._PA_121_[PER] GC-05-011-1-11

51.3 %
78 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP3

4._PA_121_[PER] GC-05-011-1-11

50.6 %
79 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

5._PA_121_[PER] GC-05-011-1-11

50.6 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

6._PA_121_[PER]

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5111 5 > FP

Dapeng Zhang, 2016

7._PA_121_[PER]

50 %
34 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D393

Dapeng Zhang, 2016

8._PA_121_[PER]

48.6 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5111 3

Dapeng Zhang, 2016

9._PA_121_[PER]

48.6 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5111 1 > FP

Dapeng Zhang, 2016

10._PA_121_[PER] RUQ_1059

48.6 %
35 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

11._PA_121_[PER]

48.6 %
35 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana

Location: P60 102

Dapeng Zhang, 2016

12._PA_121_[PER]

48.6 %
35 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: C0233

Dapeng Zhang, 2016

13._PA_121_[PER] RUQ_1059

44.4 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

14._PA_121_[PER] GC-05-011-1-11

35 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

15._PA_121_[PER] GC-05-011-1-11

35 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP4

16._PA_121_[PER]

32.9 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5111 4

Dapeng Zhang, 2016

17._PA_121_[PER]

30.9 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5111 2 > FP

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1350	20	TcSNP1383
21	TcSNP1414	22	TcSNP1439	23	TcSNP144	24	TcSNP1442	25	TcSNP1458
26	TcSNP1484	27	TcSNP150	28	TcSNP151	29	TcSNP1520	30	TcSNP154
31	TcSNP174	32	TcSNP193	33	TcSNP226	34	TcSNP230	35	TcSNP240
36	TcSNP242	37	TcSNP25	38	TcSNP28	39	TcSNP316	40	TcSNP32
41	TcSNP329	42	TcSNP364	43	TcSNP372	44	TcSNP413	45	TcSNP418
46	TcSNP42	47	TcSNP429	48	TcSNP430	49	TcSNP448	50	TcSNP521
51	TcSNP529	52	TcSNP547	53	TcSNP560	54	TcSNP561	55	TcSNP577
56	TcSNP591	57	TcSNP60	58	TcSNP602	59	TcSNP619	60	TcSNP653
61	TcSNP689	62	TcSNP723	63	TcSNP731	64	TcSNP75	65	TcSNP751
66	TcSNP776	67	TcSNP799	68	TcSNP823	69	TcSNP836	70	TcSNP860
71	TcSNP872	72	TcSNP891	73	TcSNP894	74	TcSNP899	75	TcSNP90
76	TcSNP917	77	TcSNP929	78	TcSNP944	79	TcSNP953	80	TcSNP994
81	TcSNP998