SNP Profiles of PA 120 [PER] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	AC	GG	AC	AA	GG	GG	CC	AA	GG	GG	AA	AG	AC
1._PA_120_[PER]_Fld#_172_Plt#_5	AC	AC	AG	AA	AA	GG	GG	CC	AA	GG	GG	AA	AG	AC
2._RUQ_852B	__	__	__	__	__	__	GG	__	__	__	__	__	__	__
3._RUQ_852	__	__	__	__	__	__	GG	__	__	__	__	__	__	__
4._MITC-000291	AC	AA	AA	AA	AA	GG	GG	CC	AA	GG	GG	AA	AG	CC
5._RUQ_852	__	__	__	__	__	CC	__	GG	__	__	GG	__	__	__
6._PA120[PER]	__	__	__	__	__	CT	__	__	__	__	GG	__	__	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	AG	GG	AC	GG	AA	AG	CC	AG	CG	GG	CC	AG
1._PA_120_[PER]_Fld#_172_Plt#_5	AA	AA	GG	AG	AC	GG	AA	GG	CC	AG	CG	GG	CC	GG
2._RUQ_852B	__	TT	__	__	__	__	__	__	CC	__	CG	__	__	__
3._RUQ_852	__	TT	__	__	__	__	__	__	CC	__	CG	__	__	__
4._MITC-000291	AA	AA	AA	AA	AC	GG	AG	GG	AC	AA	CC	AA	AC	AG
5._RUQ_852	__	TT	__	CC	__	__	__	CT	CC	CT	CG	GG	GG	CT
6._PA120[PER]	__	__	__	__	__	__	__	CT	AA	__	GG	__	__	TT

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AG	TT	GG	AC	GG	AA	GG	GG	GG	CC	TT	AT	GG	GG
1._PA_120_[PER]_Fld#_172_Plt#_5	GG	TT	GG	AC	GG	AG	GG	GG	GG	CC	TT	AA	GG	GG
2._RUQ_852B	__	__	__	__	__	AA	__	__	__	__	__	__	GG	__
3._RUQ_852	__	__	__	__	__	AA	__	__	__	__	__	__	GG	__
4._MITC-000291	GG	AA	GG	AA	GG	AG	GG	AG	GG	CC	AT	AT	GG	GG
5._RUQ_852	__	__	GG	AC	CC	AA	__	CC	__	__	__	__	GG	GG
6._PA120[PER]	__	__	GG	AC	GG	AA	__	__	__	__	__	__	__	GG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AA	AG	AG	GG	GG	AT	GG	GG	CC	AA	AG	AA	GG	GG
1._PA_120_[PER]_Fld#_172_Plt#_5	AA	GG	GG	GG	GG	AT	GG	GG	CC	AC	AG	AC	AG	CG
2._RUQ_852B	__	__	__	__	__	__	__	__	__	AA	__	__	__	GG
3._RUQ_852	__	__	__	__	__	__	__	__	__	AA	__	__	__	GG
4._MITC-000291	AA	AA	GG	AG	GG	AT	CG	AA	AA	CC	AG	AC	AG	CC
5._RUQ_852	AA	__	__	__	__	__	CC	__	__	AA	__	TT	__	GG
6._PA120[PER]	AA	CT	__	__	__	__	CC	__	__	__	__	__	__	CG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	CC	GG	AA	AA	AA	AA	CC	GG	AA	AA	CC	AA	AA	CG
1._PA_120_[PER]_Fld#_172_Plt#_5	CC	GG	AA	AA	GG	AA	CC	AG	AA	AA	CC	AA	AA	CG
2._RUQ_852B	CC	__	__	__	__	__	GG	GG	__	__	__	__	AA	TT
3._RUQ_852	CC	__	TT	__	__	__	GG	GG	__	__	__	__	AA	TT
4._MITC-000291	AA	GG	GG	AG	AA	AA	CC	GG	AA	AA	CC	AA	AC	CC
5._RUQ_852	CC	__	TT	TT	__	__	GG	GG	TT	__	__	TT	AA	__
6._PA120[PER]	CC	__	CC	__	__	__	__	__	__	GT	__	__	__	__

	71	72	73	74	75	76	77	78	79	80	81	82
_Input profile	GG	CC	GG	GG	AG	CC	AA	CG	GG	AA	AG	GG	X_X	X_X
1._PA_120_[PER]_Fld#_172_Plt#_5	GG	CC	GG	GG	GG	CC	AG	GG	GG	AA	AG	AG	X_X	X_X
2._RUQ_852B	__	GG	__	__	AG	__	__	__	__	__	__	GG	X_X	X_X
3._RUQ_852	__	GG	__	__	AG	__	__	__	__	__	__	GG	X_X	X_X
4._MITC-000291	AG	GG	GG	GG	GG	CC	AG	GG	GG	AT	AG	AA	X_X	X_X
5._RUQ_852	__	GG	CC	__	__	CC	__	__	__	__	__	GG	X_X	X_X
6._PA120[PER]	AG	CG	CT	__	__	__	__	__	__	__	CT	__	X_X	X_X

Input profile: PA_120_[PER] RUQ_852

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Mars, 2018

1._PA_120_[PER] PA_120_[PER]_Fld#_172_Plt#_5

86 %
82 shared markers

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USDA-TARS, United States of America

Location: Field: 172, Tree: 5

Notes: TARS_Cacao_collection

Mars, 2018

2._PA_120_[PER] RUQ_852B

75 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

3._PA_120_[PER] RUQ_852

70.6 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

View Data

Par
0.995

4._PA_120_[PER] MITC-000291

67.1 %
82 shared markers

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USDA-SHRS, United States of America

Mars, 2018

5._PA_120_[PER] RUQ_852

47.2 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

6._PA_120_[PER] PA120[PER]

45.5 %
22 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam

Location: CEFORTT

Jocelyn De Wever et al., 2019

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1350	20	TcSNP1383
21	TcSNP1414	22	TcSNP1439	23	TcSNP144	24	TcSNP1442	25	TcSNP1458
26	TcSNP1484	27	TcSNP150	28	TcSNP151	29	TcSNP1520	30	TcSNP154
31	TcSNP174	32	TcSNP193	33	TcSNP226	34	TcSNP230	35	TcSNP240
36	TcSNP242	37	TcSNP25	38	TcSNP28	39	TcSNP316	40	TcSNP32
41	TcSNP329	42	TcSNP364	43	TcSNP372	44	TcSNP413	45	TcSNP418
46	TcSNP42	47	TcSNP429	48	TcSNP430	49	TcSNP448	50	TcSNP497
51	TcSNP521	52	TcSNP529	53	TcSNP547	54	TcSNP560	55	TcSNP561
56	TcSNP577	57	TcSNP591	58	TcSNP60	59	TcSNP602	60	TcSNP619
61	TcSNP653	62	TcSNP689	63	TcSNP723	64	TcSNP731	65	TcSNP75
66	TcSNP751	67	TcSNP776	68	TcSNP799	69	TcSNP823	70	TcSNP836
71	TcSNP860	72	TcSNP872	73	TcSNP891	74	TcSNP894	75	TcSNP899
76	TcSNP90	77	TcSNP917	78	TcSNP929	79	TcSNP944	80	TcSNP953
81	TcSNP994	82	TcSNP998

SNP Profiles of PA 120 [PER] View Data

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Input profile: PA_120_[PER] RUQ_852

1._PA_120_[PER] PA_120_[PER]_Fld#_172_Plt#_5

86 % 82 shared markers

2._PA_120_[PER] RUQ_852B

75 % 16 shared markers

3._PA_120_[PER] RUQ_852

70.6 % 17 shared markers

4._PA_120_[PER] MITC-000291

67.1 % 82 shared markers

5._PA_120_[PER] RUQ_852

47.2 % 36 shared markers

6._PA_120_[PER] PA120[PER]

45.5 % 22 shared markers

86 %
82 shared markers

75 %
16 shared markers

70.6 %
17 shared markers

67.1 %
82 shared markers

47.2 %
36 shared markers

45.5 %
22 shared markers