SNP Profiles of NA 149 View Data

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AA	AA	AC	AA	GG	GG	CC	AA	GG	GG	AA	AA	CC
1._RUQ_801	__	__	__	__	__	__	GG	__	__	__	__	__	__	__
2._NA149	__	__	__	__	__	CC	__	__	__	__	GG	__	__	__
3._RUQ_801	__	__	__	__	__	CC	__	GG	__	__	GG	__	__	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	AA	AA	GG	AA	GG	CC	AA	CC	AA	CC	GG	GG
1._RUQ_801	__	TT	__	__	__	__	__	CC	__	GG	__	__	__	__
2._NA149	__	__	__	__	__	__	CC	CC	__	CC	__	__	CC	__
3._RUQ_801	__	TT	__	TT	__	__	CC	CC	TT	GG	AA	GG	CC	__

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AA	GG	AA	GG	AA	GG	GG	GG	CC	TT	TT	GG	GG	AA
1._RUQ_801	__	__	__	__	AA	__	__	__	__	__	__	GG	__	__
2._NA149	__	GG	AA	GG	AA	__	__	__	__	__	__	__	GG	AA
3._RUQ_801	__	GG	AA	CC	AA	__	CC	__	__	__	__	GG	GG	AA

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	GG	GG	GG	GG	AA	GG	AA	AA	CC	GG	CC	GG	GG	AA
1._RUQ_801	__	__	__	__	__	__	__	__	CC	__	__	__	GG	AA
2._NA149	CC	__	__	__	__	CC	__	__	__	__	__	__	GG	AA
3._RUQ_801	__	__	__	__	__	CC	__	__	CC	__	GG	__	GG	AA

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	GG	GG	GG	AA	AA	CC	GG	AA	AA	CC	AA	CC	CC	GG
1._RUQ_801	__	CC	__	__	__	GG	GG	__	__	__	__	CC	TT	__
2._NA149	__	CC	__	__	__	__	__	__	TT	__	__	__	__	GG
3._RUQ_801	__	CC	CC	__	__	GG	GG	TT	__	__	TT	CC	__	__

	71	72	73	74	75	76	77	78	79	80	81
_Input profile	CC	GG	GG	GG	CC	GG	GG	GG	AA	AA	GG	X_X	X_X	X_X
1._RUQ_801	GG	__	__	GG	__	__	__	__	__	__	GG	X_X	X_X	X_X
2._NA149	CC	CC	__	__	__	__	__	__	__	TT	__	X_X	X_X	X_X
3._RUQ_801	GG	CC	__	GG	CC	__	__	__	__	__	GG	X_X	X_X	X_X

Input profile: NA_149 RUQ_801

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

1._NA_149 RUQ_801

64.7 %
17 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

2._NA_149 NA149

59.1 %
22 shared markers

View View all Clone Any

Center for Forestry Research and Technology Transfer, Vietnam

Location: CEFORTT

Jocelyn De Wever et al., 2019

3._NA_149 RUQ_801

45.9 %
37 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1383	20	TcSNP1414
21	TcSNP1439	22	TcSNP144	23	TcSNP1442	24	TcSNP1458	25	TcSNP1484
26	TcSNP150	27	TcSNP151	28	TcSNP1520	29	TcSNP154	30	TcSNP174
31	TcSNP193	32	TcSNP226	33	TcSNP230	34	TcSNP240	35	TcSNP242
36	TcSNP25	37	TcSNP28	38	TcSNP316	39	TcSNP32	40	TcSNP329
41	TcSNP364	42	TcSNP372	43	TcSNP413	44	TcSNP418	45	TcSNP42
46	TcSNP429	47	TcSNP430	48	TcSNP448	49	TcSNP497	50	TcSNP521
51	TcSNP529	52	TcSNP547	53	TcSNP560	54	TcSNP561	55	TcSNP577
56	TcSNP591	57	TcSNP60	58	TcSNP602	59	TcSNP619	60	TcSNP653
61	TcSNP689	62	TcSNP723	63	TcSNP731	64	TcSNP75	65	TcSNP751
66	TcSNP776	67	TcSNP799	68	TcSNP823	69	TcSNP836	70	TcSNP860
71	TcSNP872	72	TcSNP891	73	TcSNP894	74	TcSNP899	75	TcSNP90
76	TcSNP917	77	TcSNP929	78	TcSNP944	79	TcSNP953	80	TcSNP994
81	TcSNP998