SNP Profiles of MO 9   View Data

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 1234567891011121314
_Input profile
CCCCAGACAAGGGGCCAAGGAGAAGGAA
1._RUQ_1691
______GG_______
2._MO_9
_____CCGG_AA_____
3._MO_9
_____CCGG_AA_____
4._MO_9
_____CCGG_AA_____
5._MO_9
_____CCGG_AA_____
6._MO_9
_____CCGG_AA_____
7._MO_9
_____CCGG_AA_____
8._GC-05-119-3-21
CCCCAGACTTCCGGGGAACCAGTTCCTT
9._GC-05-119-3-21
CCCCAGACTTCCGGGGAACCAGTTCCTT
10._GC-05-119-3-21
CCCCAGACTTCCGGGGAACCAGTTCCTT
11._GC-05-071-2-22
CCCCAGACTTCCGGGGAACCAGTTCCTT
12._GC-05-071-2-22
CCCCAGACTTCCGGGGAACCAGTTCCTT
13._GC-05-119-3-21
CCACGGACTTCTAGGGAACTAGTTCTGT
14._GC-05-071-2-22
CCACGGACTTCTAGGGAACTAGTTCTGT
15._GC-05-071-2-22
CCACGGACTTCTAGGGAACTAGTTCTGT
16._GC-05-071-2-22
CCACGGACTTCTAGGGAACTAGTTCTGT
17._GC-05-071-2-22
CCACGGACTTCTAGGG_CTAGTTCTGT
18._MO_9
_____CTAG_AA_____
19._MO_9
_____CTAG_AA_____
20._MO_9
_____CTAG_AA_____
21._MO_9
_____CTAG_AA_____
22._MO_9
_____CTAG_______
 1516171819202122232425262728
_Input profile
AAAAGGGGACGGAAAGACAGCGGGACGG
1._RUQ_1691
_TT______AC_CG___
2._MO_9
_TTCC_AC_TT_ACCTCGGGGTCC
3._MO_9
_TTCC_AC_TT_ACCTCGGGGTCC
4._MO_9
_TTCC_AC_TT_ACCTCGGGGTCC
5._MO_9
_TTCC_AC_TT_ACCTCGGGGTCC
6._MO_9
_TTCC_AC_TT_ACCTCGGGGTCC
7._MO_9
_TTCC_AC_TT_ACCTCGGGGTCC
8._GC-05-119-3-21
TTTTCC_ACGGTTCTACCTCGGGGTCC
9._GC-05-119-3-21
TTTTCC_ACGGTTCTACCTCGGGGTCC
10._GC-05-119-3-21
TTTTCC_ACGGTTCTACCTCGGGGTCC
11._GC-05-071-2-22
TTTTCC_ACGGTTCTACCTCGGGGTCC
12._GC-05-071-2-22
TTTTCC_ACGGTTCTACCTCGGGGTCC
13._GC-05-119-3-21
CTGTCC_ACAGCTCTAATTCGAAGGCT
14._GC-05-071-2-22
CTGTCC_ACAGCTCTAATTCGAAGGCT
15._GC-05-071-2-22
CTGTCC_ACAGCTCTAATTCGAAGGCT
16._GC-05-071-2-22
CTGTCC_ACAGCTCTAATTCGAAGGCT
17._GC-05-071-2-22
CTGTCC_ACAGCTCTAATTCGAAGGCT
18._MO_9
_GTCC_AC_CT_AATTCGAAGGCT
19._MO_9
_GTCC_AC_CT_AATTCGAAGGCT
20._MO_9
_GTCC_AC_CT_AATTCGAAGGCT
21._MO_9
_GTCC_AC_CT_AATTCGAAGGCT
22._MO_9
_GTCC_AC_CT_AATTCGAAGGCT
 2930313233343536373839404142
_Input profile
GGTTGGACGGAAGGGGGGCCTTAAGGGG
1._RUQ_1691
_____AA______GG_
2._MO_9
CC__AC_AA_CCGG__AA__
3._MO_9
CC___CCAA_CCGG__AA__
4._MO_9
CC__AACCAA_CCGG__AA__
5._MO_9
CC__AACCAA_CCGG__AA__
6._MO_9
CC__AACCAA_CCGG__AA__
7._MO_9
CC__AACCAA_CCGG__AA__
8._GC-05-119-3-21
CCAAGG_CCAAGGCCGGGGAAAAGGGG
9._GC-05-119-3-21
CCAAGGAACCAAGGCCGGGGAAAAGGGG
10._GC-05-119-3-21
CCAAGGAACCAAGGCCGGGGAAAAGGGG
11._GC-05-071-2-22
CCAAGGAACCAAGGCCGGGGAAAAGGGG
12._GC-05-071-2-22
CCAAGGAACCAAGGCCGGGGAAAAGGGG
13._GC-05-119-3-21
CTATGGACCGAGGGCTCGGTATATAAAG
14._GC-05-071-2-22
CTATGGACCGAGGGCTCGGTATATAAAG
15._GC-05-071-2-22
CTATGGACCGAGGGCTCGGTATATAAAG
16._GC-05-071-2-22
CTATGGACCGAGGGCTCGGTATATAAAG
17._GC-05-071-2-22
CTATGGACCGAGGGCTCGGTATATAAAG
18._MO_9
CT__ACCGAG_CTCG__AT__
19._MO_9
CT__ACCGAG_CTCG__AT__
20._MO_9
CT__ACCGAG_CTCG__AT__
21._MO_9
CT__ACCGAG_CTCG__AT__
22._MO_9
CT__ACCGAG_CTCG__AT__
 4344454647484950515253545556
_Input profile
AAAAGGGGGGTTGGGGCCCCAGACGGGG
1._RUQ_1691
_________CC___GG
2._MO_9
AA___GG____CC_GT_GG
3._MO_9
AA___GG____CC_GT_GG
4._MO_9
AA___GG____CC_GT_GG
5._MO_9
AA___GG____CC_GT_GG
6._MO_9
AA___GG____CC_GT_GG
7._MO_9
AA___GG____CC_GT_GG
8._GC-05-119-3-21
AATTGGGGGGTTCC_CCCCAGGTGGGG
9._GC-05-119-3-21
AATTGGGGGGTTCC_CCCCAGGTGGGG
10._GC-05-119-3-21
AATTGGGGGGTTCC_CCCCAGGTGGGG
11._GC-05-071-2-22
AATTGGGGGGTTCC_CCCCAGGTGGGG
12._GC-05-071-2-22
AATTGGGGGGTTCC_CCCCAGGTGGGG
13._GC-05-119-3-21
ATCTAGGGAGAAGG_ACACAGGTAGCG
14._GC-05-071-2-22
ATCTAGGGAGAAGG_ACACAGGTAGCG
15._GC-05-071-2-22
ATCTAGGGAGAAGG_ACACAGGTAGCG
16._GC-05-071-2-22
ATCTAGGGAGAAGG_ACACAGGTAGCG
17._GC-05-071-2-22
ATCTAGGGAGAAGG_ACACAGGTAGCG
18._MO_9
AT___AG____AC_GT_CG
19._MO_9
AT___AG____AC_GT_CG
20._MO_9
AT___AG____AC_GT_CG
21._MO_9
AT___AG____AC_GT_CG
22._MO_9
AT___AG____AC_GT_CG
 5758596061626364656667686970
_Input profile
CCGGAAAAAAAACCAGAAACCCAAAACC
1._RUQ_1691
CC_TT___GGAG____AATT
2._MO_9
CC__TT__GG_______
3._MO_9
CC__TT__GG_______
4._MO_9
CC__TT__GG_______
5._MO_9
CC__TT__GG_______
6._MO_9
CC__TT__GG_______
7._MO_9
CC__TT__GG_______
8._GC-05-119-3-21
CCCCTTTTAAAAGGAGTTGTGGTTAAGG
9._GC-05-119-3-21
CCCCTTTTAAAAGGAGTTGTGGTTAAGG
10._GC-05-119-3-21
CCCCTTTTAAAAGGAGTTGTGGTTAAGG
11._GC-05-071-2-22
CCCCTTTTAAAAGGAGTTGTGGTTAAGG
12._GC-05-071-2-22
CCCCTTTTAAAAGGAGTTGTGGTTAAGG
13._GC-05-119-3-21
ACCTCCTTAAAAGTAGCTGTGGTTACCG
14._GC-05-071-2-22
ACCTCCTTAAAAGTAGCTGTGGTTACCG
15._GC-05-071-2-22
ACCTCCTTAAAAGTAGCTGTGGTTACCG
16._GC-05-071-2-22
ACCTCCTTAAAAGTAGCTGTGGTTACCG
17._GC-05-071-2-22
ACCTCCTTAAAAGTAGCTGTGGTTACCG
18._MO_9
AC__TT__GT_______
19._MO_9
AC__TT__GT_______
20._MO_9
AC__TT__GT_______
21._MO_9
AC__TT__GT_______
22._MO_9
AC__TT__GT_______
 717273747576777879808182  
_Input profile
AGCCGGGGGGCCAGCGGGAAAGAGX_XX_X
1._RUQ_1691
_GG__GG______AGX_XX_X
2._MO_9
_GGCC___CTCG_AACTAGX_XX_X
3._MO_9
_GGCC___CTCG_AACTAGX_XX_X
4._MO_9
_GGCC___CTCG_AACTAGX_XX_X
5._MO_9
_GGCC___CTCG_AACTAGX_XX_X
6._MO_9
_GGCC___CTCG_AACTAGX_XX_X
7._MO_9
_GGCC___CTCG_AACTAGX_XX_X
8._GC-05-119-3-21
AAGGCCCCGGCCCTCGCCAACTAGX_XX_X
9._GC-05-119-3-21
AAGGCCCCGGCCCTCGCCAACTAGX_XX_X
10._GC-05-119-3-21
AAGGCCCCGGCCCTCGCCAACTAGX_XX_X
11._GC-05-071-2-22
AAGGCCCCGGCCCTCGCCAACTAGX_XX_X
12._GC-05-071-2-22
AAGGCCCC_CCCTCGCCAACTAGX_XX_X
13._GC-05-119-3-21
AACCCTCCAGACCTCGCTATCTAGX_XX_X
14._GC-05-071-2-22
AACCCTCCAGACCTCGCTATCTAGX_XX_X
15._GC-05-071-2-22
AACCCTCCAGACCTCGCTATCTAGX_XX_X
16._GC-05-071-2-22
AACCCTCCAGACCTCGCTATCTAGX_XX_X
17._GC-05-071-2-22
AACCCTCCAGACCTCGCTATCTAGX_XX_X
18._MO_9
_CCCT___CTCG_ATCTAGX_XX_X
19._MO_9
_CCCT___CTCG_ATCTAGX_XX_X
20._MO_9
_CCCT___CTCG_ATCTAGX_XX_X
21._MO_9
_CCCT___CTCG_ATCTAGX_XX_X
22._MO_9
_CCCT___CTCG_ATCTAGX_XX_X

Input profile: MO_9 RUQ_1691

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._MO_9 RUQ_1691

70.6 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._MO_9

52.9 %
34 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D835
 Dapeng Zhang, 2016

3._MO_9

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 3 > FP
 Dapeng Zhang, 2016

4._MO_9

50 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

5._MO_9

50 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 1 > FP
 Dapeng Zhang, 2016

6._MO_9

50 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 2
 Dapeng Zhang, 2016

7._MO_9

50 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 4 > FP
 Dapeng Zhang, 2016

8._MO_9 GC-05-119-3-21

50 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

9._MO_9 GC-05-119-3-21

50 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

10._MO_9 GC-05-119-3-21

50 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

11._MO_9 GC-05-071-2-22

50 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

12._MO_9 GC-05-071-2-22

49.4 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

13._MO_9 GC-05-119-3-21

38.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

14._MO_9 GC-05-071-2-22

38.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

15._MO_9 GC-05-071-2-22

38.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

16._MO_9 GC-05-071-2-22

38.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

17._MO_9 GC-05-071-2-22

38 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

18._MO_9

37.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 4 > FP
 Dapeng Zhang, 2016

19._MO_9

37.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

20._MO_9

37.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 3 > FP
 Dapeng Zhang, 2016

21._MO_9

37.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 5
 Dapeng Zhang, 2016

22._MO_9

35.3 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998