SNP Profiles of UF 667   View Data

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 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ACACAGAAAGAGAAACAAGGAGAAAAAC
1._ICS_48___
____________AA______________
2._ICS_48___
ACCCAGACAAGGAGCCATAGGGAGAGAC
3._ICS_48___
__________CTAA__AA__________
4._ICS_48___
__________CTAA__AA__________
5._ICS_48___
__________CTAA__AA__________
6._ICS_48___
__________CTAA__AA__________
7._ICS_48___
__________CTAA__AA__________
8._ICS_48___
__________CTAA__AA__________
9._ICS_48___
__________CTAA__AA__________
10._ICS_48___
__________CTAA__AA__________
11._ICS_48___
__________CTAA__AA__________
12._ICS_48___
ACACAGAACTCTAAGTAACCAGTTTTGT
13._ICS_48___
ACACAGAACTCTAAGTAACCAGTTTTGT
14._ICS_48___
ACACAGAACTCTAAGTAACCAGTTTTGT
15._ICS_48___
ACACAGAACTCTAAGTAACCAGTTTTGT
16._ICS_48___
ACACAGAACTCTAAGTAACCAGTTTTGT
17._ICS_48___
ACACAGAACTCTAAGTAACCAGTTTTGT
18._ICS_48___
ACACAGAACTCTAAGTAACCAGTTTTGT
19._ICS_48___
ACACAGAACTCTAAGTAACCAGTTTTGT
20._ICS_48___
__________CT__GT____AG______
21._ICS_48___
__________CTAA__AT__________
22._ICS_48___
__________CTAA__AA__________
23._ICS_48___
__________CCAA__AA__________
24._ICS_48___
CCACAAAATTCCAAGGAACCAGTTTTGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AGAAGGAGAAGGAAAGACAGCCAGACAG
1._ICS_48___
__GT____________AC__CG______
2._ICS_48___
AGACAGAAACGGAGAGCCAGCGAGACAG
3._ICS_48___
__GTCC__AA__TT__ACCTCGAGGTCT
4._ICS_48___
__GTCC__AA__TT__ACCTCGAGGTCT
5._ICS_48___
__GTCC__AA__TT__ACCTCGAGGTCT
6._ICS_48___
__GTCC__AA__TT__ACCTCGAGGTCT
7._ICS_48___
__GTCC__AA__TT__ACCTCGAGGTCT
8._ICS_48___
__GTCC__AA__TT__ACCTCGAGGTCT
9._ICS_48___
__GTCC__AA__TT__ACCTCGAGGTCT
10._ICS_48___
__GTCC__AA__TT__ACCTCGAGGTCT
11._ICS_48___
__GTCC__AA__TT__ACCTCGAGGTCT
12._ICS_48___
CTGTCCTTAAGGTTCTACCTCGAGGTCT
13._ICS_48___
CTGTCCTTAAGGTTCTACCTCGAGGTCT
14._ICS_48___
CTGTCCTTAAGGTTCTACCTCGAGGTCT
15._ICS_48___
CTGTCCTTAAGGTTCTACCTCGAGGTCT
16._ICS_48___
CTGTCCTTAAGGTTCTACCTCGAGGTCT
17._ICS_48___
CTGTCCTTAAGGTTCTACCTCGAGGTCT
18._ICS_48___
CTGTCCTTAAGGTTCTACCTCGAGGTCT
19._ICS_48___
CTGTCCTTAAGGTTCTACCTCGAGGTCT
20._ICS_48___
__GT__CT______CTACCTCGAGGTCT
21._ICS_48___
__GTCC__AA__TT__ACCTGGAGGTCT
22._ICS_48___
__GTCC__AA__TT__ACCTGGAGGTCT
23._ICS_48___
__TTCC__AA__TT__CCCTGGAATTCC
24._ICS_48___
CCTTCCTTAAGGTTTTCCCTGGAATTCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AGATAGACCGAGGGAGGGCCATATAGAG
1._ICS_48___
__________AG____________AG__
2._ICS_48___
AGTTGGACGGAAGGAGGGACTTATGGGG
3._ICS_48___
CT____ACCGAG__CTGG____AT____
4._ICS_48___
CT____ACCGAG__CTGG____AT____
5._ICS_48___
CT____ACCGAG__CTGG____AT____
6._ICS_48___
CT____ACCGAG__CTGG____AT____
7._ICS_48___
CT____ACCGAG__CTGG____AT____
8._ICS_48___
CT____ACCGAG__CTGG____AT____
9._ICS_48___
CT____ACCGAG__CTGG____AT____
10._ICS_48___
CT____ACCGAG__CTGG____AT____
11._ICS_48___
CT____ACCGAG__CTGG____AT____
12._ICS_48___
CTATAGACCGAGGGCTGGGGATATAGAG
13._ICS_48___
CTATAGACCGAGGGCTGGGGATATAGAG
14._ICS_48___
CTATAGACCGAGGGCTGGGGATATAGAG
15._ICS_48___
CTATAGACCGAGGGCTGGGGATATAGAG
16._ICS_48___
CTATAGACCGAGGGCTGGGGATATAGAG
17._ICS_48___
CTATAGACCGAGGGCTGGGGATATAGAG
18._ICS_48___
CTATAGACCGAGGGCTGGGGATATAGAG
19._ICS_48___
CTATAGACCGAGGGCTGGGGATATAGAG
20._ICS_48___
____AGACCGAG__CT________AGAG
21._ICS_48___
CT____AC__AG__CTGG____AT____
22._ICS_48___
CT____ACGGAG__CTGG____AT____
23._ICS_48___
TT____AACCAG__CTGG____TT____
24._ICS_48___
TTAAGGAACCAGGGCTGGGGATTTGGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
ATAGAGAGGGATCGAGCCCCGGACAACG
1._ICS_48___
__________________CC______CG
2._ICS_48___
ATAGAGAGGGATGGAGCCACAGACAGCC
3._ICS_48___
AT______GG________CC__GT__CG
4._ICS_48___
AT______GG________CC__GT__CG
5._ICS_48___
AT______GG________CC__GT__CG
6._ICS_48___
AT______GG________CC__GT__CG
7._ICS_48___
AT______GG________CC__GT__CG
8._ICS_48___
AT______GG________CC__GT__CG
9._ICS_48___
AT______GG________CC__GT__CG
10._ICS_48___
AT______GG________CC__GT__CG
11._ICS_48___
AT______GG________CC__GT__CG
12._ICS_48___
ATCTAGAGGGATCG__CCCCGGGTAACG
13._ICS_48___
ATCTAGAGGGATCG__CCCCGGGTAACG
14._ICS_48___
ATCTAGAGGGATCG__CCCCGGGTAACG
15._ICS_48___
ATCTAGAGGGATCG__CCCCGGGTAACG
16._ICS_48___
ATCTAGAGGGATCG__CCCCGGGTAACG
17._ICS_48___
ATCTAGAGGGATCG__CCCCGGGTAACG
18._ICS_48___
ATCTAGAGGGATCG__CCCCGGGTAACG
19._ICS_48___
ATCTAGAGGGATCG__CCCCGGGT__CG
20._ICS_48___
AT__________CG____CC__GT__GG
21._ICS_48___
AT______GG________CC__GT__CG
22._ICS_48___
AT______GG________CC__GT__CG
23._ICS_48___
AA______GG________CC__TT__CG
24._ICS_48___
AATTGGGGGGATCC__CCCCGGTTAACG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
ACAGGGAGAAAGAAAGAGACCCACACCC
1._ICS_48___
AC__CC______TTAG________ACTT
2._ICS_48___
ACGGAGAAAGAACCAGAAAAACAAACCG
3._ICS_48___
AC____CT____TT______________
4._ICS_48___
AC____CT____TT______________
5._ICS_48___
AC____CT____TT______________
6._ICS_48___
AC____CT____TT______________
7._ICS_48___
AC____CT____TT______________
8._ICS_48___
AC____CT____TT______________
9._ICS_48___
AC____CT____TT______________
10._ICS_48___
AC____CT____TT______________
11._ICS_48___
AC____CT____TT______________
12._ICS_48___
ACCTCCCTAGAGTTAGCTGTGGGTACGG
13._ICS_48___
ACCTCCCTAGAGTTAGCTGTGGGTACGG
14._ICS_48___
ACCTCCCTAGAGTTAGCTGTGGGTACGG
15._ICS_48___
ACCTCCCTAGAGTTAGCTGTGGGTACGG
16._ICS_48___
ACCTCCCTAGAGTTAGCTGTGGGTACGG
17._ICS_48___
ACCTCCCTAGAGTTAGCTGTGGGTACGG
18._ICS_48___
ACCTCCCTAGAGTTAGCTGTGGGTACGG
19._ICS_48___
ACCTCCCTAGAGTTAGCTGTGGGTACGG
20._ICS_48___
AA__CCCT____TTAGCT____GTAC__
21._ICS_48___
AC____CT____TT______________
22._ICS_48___
AC____CT____TT______________
23._ICS_48___
CC____TT____GT______________
24._ICS_48___
CCCCTTTTAAAAGTGGTTTTTTTTCCGG
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
AGCGGGGGGGACAAGGAGAAAGAAX_XX_X
1._ICS_48___
__CG____GG____________AAX_XX_X
2._ICS_48___
AGCCGGGGAACCAGGGAGATAGAGX_XX_X
3._ICS_48___
__CGCC______TTGG__AACTAAX_XX_X
4._ICS_48___
__CGCC______TTGG__AACTAAX_XX_X
5._ICS_48___
__CGCC______TTGG__AACTAAX_XX_X
6._ICS_48___
__CGCC______TTGG__AACTAAX_XX_X
7._ICS_48___
__CGCC______TTGG__AACTAAX_XX_X
8._ICS_48___
__CGCC______TTGG__AACTAAX_XX_X
9._ICS_48___
__CGCC______TTGG__AACTAAX_XX_X
10._ICS_48___
__CGCC______TTGG__AACTAAX_XX_X
11._ICS_48___
__CGCC______TTGG__AACTAAX_XX_X
12._ICS_48___
AACGCCCCGGACTTGGCTAACTAAX_XX_X
13._ICS_48___
AACGCCCCGGACTTGGCTAACTAAX_XX_X
14._ICS_48___
AACGCCCCGGACTTGGCTAACTAAX_XX_X
15._ICS_48___
AACGCCCCGGACTTGGCTAACTAAX_XX_X
16._ICS_48___
AACGCCCCGGACTTGGCTAACTAAX_XX_X
17._ICS_48___
AACGCCCCGGACTTGGCTAACTAAX_XX_X
18._ICS_48___
AACGCCCCGGACTTGGCTAACTAAX_XX_X
19._ICS_48___
AACGCCCCGGACTTGGCTAACTAAX_XX_X
20._ICS_48___
__CGCC__GGAC__________AAX_XX_X
21._ICS_48___
__CGCC______TTGG__AACTAAX_XX_X
22._ICS_48___
__CGCC______TTCG__AACTAAX_XX_X
23._ICS_48___
__GGCC______TTGG__AATTAAX_XX_X
24._ICS_48___
__GGCCCCAGCCTTGGCCAATTAAX_XX_X

Input profile: ICS_48 RUQ_146

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._ICS_48 RUQ_146

73.5 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

2._ICS_48 ICS_48_Fld#_105_Plt#_2

69.5 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 105, Tree: 2
 Mars, 2018

3._ICS_48

55.7 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5229 3
 Dapeng Zhang, 2016

4._ICS_48

55.7 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5229 4
 Dapeng Zhang, 2016

5._ICS_48

55.7 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5229 5
 Dapeng Zhang, 2016

6._ICS_48

55.7 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5229 1 > FP
 Dapeng Zhang, 2016

7._ICS_48

55.7 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5322 1
 Dapeng Zhang, 2016

8._ICS_48

55.7 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5322 4
 Dapeng Zhang, 2016

9._ICS_48

55.7 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5322 2 > FP
 Dapeng Zhang, 2016

10._ICS_48

55.7 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5322 3 > FP
 Dapeng Zhang, 2016

11._ICS_48 RUQ_146

55.7 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

12._ICS_48 GC-05-078-2-29

54.9 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

13._ICS_48 GC-05-078-2-29

54.9 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

14._ICS_48 GC-05-078-2-29

54.9 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

15._ICS_48 GC-05-120-3-22

54.9 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

16._ICS_48 GC-05-120-3-22

54.9 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

17._ICS_48 GC-05-120-3-22

54.9 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

18._ICS_48 GC-05-120-3-22

54.9 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

19._ICS_48 GC-05-078-2-29

54.4 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

20._ICS_48 RUQ_146

52.7 %
37 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._ICS_48

51.5 %
34 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B E318 T6
 Dapeng Zhang, 2016

22._ICS_48

51.4 %
35 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block3
 Dapeng Zhang, 2016

23._ICS_48

42.9 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5229 2 > FP
 Dapeng Zhang, 2016

24._ICS_48 GC-05-078-2-29

41.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998