SNP Profiles of UF 667   View Data

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 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ACCCAGAAAGAGAAACAAGGAGAAAAAC
1._ICS_40___
____________AA______________
2._ICS_40___
__________CTAA__AA__________
3._ICS_40___
__________CTAA__AA__________
4._ICS_40___
ACCCAGAACTCTAAGTAACCAGTTTTGT
5._ICS_40___
__________CTAA__AA__________
6._ICS_40___
__________CTAA__AA__________
7._ICS_40___
__________CTAA__AA__________
8._ICS_40___
__________CTAA__AA__________
9._ICS_40___
__________CTAA__AA__________
10._ICS_40___
__________CTAA__AA__________
11._ICS_40___
ACCCAGAACTCTAAGTAACCAGTTTTGT
12._ICS_40___
ACCCAGAACTCTAAGTAACCAGTTTTGT
13._ICS_40___
ACCCAGAACTCTAAGTAACCAGTTTTGT
14._ICS_40___
ACCCAGAACTCTAAGTAACCAGTTTTGT
15._ICS_40___
ACCCAGAACTCTAAGTAACCAGTTTTGT
16._ICS_40___
__________CTAA__AA__________
17._ICS_40___
__________CTAA__AA__________
18._ICS_40___
ACCCAGAACTCTAAGTAACCAGTTTTGT
19._ICS_40___
__________CTAA__AA__________
20._ICS_40___
__________CT__GT____AG______
21._ICS_40___
ACCCAGAACTCTAAGTAACCAGTTTTGT
22._ICS_40___
ACACAGCCTTCCGGGGAATTGGCTCCGT
23._ICS_40___
__________CCGG__AA__________
24._ICS_40___
__________CCGG__AA__________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AGAAGGAGAAGGAAAGACAGCCAGACAG
1._ICS_40___
__GT____________AC__CG______
2._ICS_40___
____CC__AA__TT__ACCTCGAGGTCT
3._ICS_40___
__GTCC__AA__TT__ACCTCGAGGTCT
4._ICS_40___
CT__CCTTAAGGTTCTACCTCGAGGTCT
5._ICS_40___
__GTCC__AA__TT__ACCTCGAGGTCT
6._ICS_40___
__GTCC__AA__TT__ACCTCGAGGTCT
7._ICS_40___
__GTCC__AA__TT__ACCTCGAGGTCT
8._ICS_40___
__GTCC__AA__TT__ACCTCGAGGTCT
9._ICS_40___
__GTCC__AA__TT__ACCTCGAGGTCT
10._ICS_40___
__GTCC__AA__CT__ACCTCGAGGTCT
11._ICS_40___
CTGTCCTTAAGGTTCTACCTCGAGGTCT
12._ICS_40___
CTGTCCTTAAGGTTCTACCTCGAGGTCT
13._ICS_40___
CTGTCCTTAAGGTTCTACCTCGAGGTCT
14._ICS_40___
CTGTCCTTAAGGTTCTACCTCGAGGTCT
15._ICS_40___
CTGTCCTTAAGGTTCTACCTCGAGGTCT
16._ICS_40___
__GTCC__AA__TT__ACCTCGAGGTCT
17._ICS_40___
__GTCC__AA__TT__ACCTGGAGGTCT
18._ICS_40___
CTGTCCTTAAGGTTCTACCTCGAGGTCT
19._ICS_40___
__GT____AA__TT__ACCTGG__GT__
20._ICS_40___
__GT__CT______CTACCTCGAGGTCT
21._ICS_40___
CTGTCCTTAAGGTTCTACCTCGAGGTCT
22._ICS_40___
CTGGCTTTACGGCTCCACTTCCGGGGTT
23._ICS_40___
__GGCT__AC__CT__ACTTCCGGGGTT
24._ICS_40___
__GTCT__AC__CT__CCTTGGGGGTCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AGATAGACCGAGGGAGGGCCATATAGAG
1._ICS_40___
__________AG____________AG__
2._ICS_40___
CT____ACCGAG__CTGG____AT____
3._ICS_40___
CT____ACCGAG__CTGG____AT____
4._ICS_40___
CTATAGACCGAGGGCTGGGGATATAGAG
5._ICS_40___
CT____ACCGAG__CTGG____AT____
6._ICS_40___
CT____ACCGAG__CTGG____AT____
7._ICS_40___
CT____ACCGAG__CTGG____AT____
8._ICS_40___
CT____ACCGAG__CTGG____AT____
9._ICS_40___
CT____ACCGAG__CTGG____AT____
10._ICS_40___
CT____ACCGAG__CTGG____AT____
11._ICS_40___
CTATAGACCGAGGGCTGGGGATATAGAG
12._ICS_40___
CTATAGACCGAGGGCTGGGGATATAGAG
13._ICS_40___
CTATAGACCGAGGGCTGGGGATATAGAG
14._ICS_40___
CTATAGACCGAGGGCTGGGGATATAGAG
15._ICS_40___
CTATAGACCGAGGGCTGGGGATATAGAG
16._ICS_40___
CT______CGAG__CTGG____AT____
17._ICS_40___
CT____ACCGAG__CTGG____AT____
18._ICS_40___
CTCCAGACCGAGCCCTGGGGATATAGAG
19._ICS_40___
______AC__AG__CTGG____AT____
20._ICS_40___
____AGACCGAG__CT________AGAG
21._ICS_40___
CTCCAG__CGAGCCCTGGGGATATAGAG
22._ICS_40___
CCATAGCCCCAGGGCCGGGGATATGGGG
23._ICS_40___
CC____CCCCAG__CCGG____AT____
24._ICS_40___
CC____ACGGAA__TTCG____TT____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
ATAGAGAGGGATCGAGCCCCGGACAACC
1._ICS_40___
__________________CC______CC
2._ICS_40___
AT______GG________CC__GT__CC
3._ICS_40___
AT______GG________CC__GT__CC
4._ICS_40___
ATCTAGAGGGATCG__CCCCGGGTAACC
5._ICS_40___
AT______GG________CC__GT__CC
6._ICS_40___
AT______GG________CC__GT__CC
7._ICS_40___
AT______GG________CC__GT__CC
8._ICS_40___
AT______GG________CC__GT__CC
9._ICS_40___
AT______GG________CC__GT__CC
10._ICS_40___
AT______GG________CC__GT__CC
11._ICS_40___
ATCTAGAGGGATCG__CCCCGGGTAACC
12._ICS_40___
ATCTAGAGGGATCG__CCCCGGGTAACC
13._ICS_40___
ATCTAGAGGGATCG__CCCCGGGTAACC
14._ICS_40___
ATCTAGAGGGATCG__CCCCGGGTAACC
15._ICS_40___
ATCTAGAGGGATCG__CCCCGGGTAACC
16._ICS_40___
AT______GG________CC__GT__CC
17._ICS_40___
AT______GG________CC__GT__CC
18._ICS_40___
ATCTAGAGGGATCGCTCCCCGGGTAACC
19._ICS_40___
________GG________CC__GT__CC
20._ICS_40___
AT__________CG____CC__GT__CC
21._ICS_40___
ATCTAGAGGGATCGCTCCCCGGGTAACC
22._ICS_40___
ATCCAGAGAAAACG__AAAAAGGGGGGG
23._ICS_40___
AT______AA________AA__GG__GG
24._ICS_40___
AA______AG________AC__TT__CC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
ACAGGGAGAGAGACAGAGACACACCCCC
1._ICS_40___
AC__CC______GTAG________CCTT
2._ICS_40___
AC____CT____GT______________
3._ICS_40___
AC____CT____GT______________
4._ICS_40___
ACCTCCCTAGAGGTAGCTGTGTGTCCGG
5._ICS_40___
AC____CT____GT______________
6._ICS_40___
AC____CT____GT______________
7._ICS_40___
AC____CT____GT______________
8._ICS_40___
AC____CT____GT______________
9._ICS_40___
AC____CT____GT______________
10._ICS_40___
AC____CT____GT______________
11._ICS_40___
ACCTCCCTAGAGGTAGCTGTGTGTCCGG
12._ICS_40___
ACCTCCCTAGAGGTAGCTGTGTGTCCGG
13._ICS_40___
ACCTCCCTAGAGGTAGCTGTGTGTCCGG
14._ICS_40___
ACCTCCCTAGAGGTAGCTGTGTGTCCGG
15._ICS_40___
ACCTCCCTAGAGGTAGCTGTGTGTCCGG
16._ICS_40___
AC____CT____GT______________
17._ICS_40___
AC____CT____GT______________
18._ICS_40___
ACCTCCCTAGAGGTAGCT__GTGTCCGG
19._ICS_40___
______CT____GT______________
20._ICS_40___
AA__CCCT____GTAGCT____GTCC__
21._ICS_40___
ACCTCCCTAGAGGTAGCTGTGTGTCCGG
22._ICS_40___
CCCCCCTTAAAGGTAGCTTTGTTTACCC
23._ICS_40___
CC____TT____GT______________
24._ICS_40___
CC____CT____GG______________
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
AGCGGGGGGGACAAGGAGAAAGAAX_XX_X
1._ICS_40___
__CG____GG____________AAX_XX_X
2._ICS_40___
__CGCC______TTGG__AACTAAX_XX_X
3._ICS_40___
__CGCC______TTGG__AA__AAX_XX_X
4._ICS_40___
AACGCCCCGGACTTGGCTAACTAAX_XX_X
5._ICS_40___
__CGCC______TTGG__AACTAAX_XX_X
6._ICS_40___
__CGCC______TTGG__AACTAAX_XX_X
7._ICS_40___
__CGCC______TTGG__AACTAAX_XX_X
8._ICS_40___
__CGCC______TTGG__AACTAAX_XX_X
9._ICS_40___
__CGCC______TTGG__AACTAAX_XX_X
10._ICS_40___
__CGCC______TTGG__AACTAAX_XX_X
11._ICS_40___
AACGCCCCGGACTTGGCTAACTAAX_XX_X
12._ICS_40___
AACGCCCCGGACTTGGCTAACTAAX_XX_X
13._ICS_40___
AACGCCCCGGACTTGGCTAACTAAX_XX_X
14._ICS_40___
AACGCCCCGGACTTGGCTAACTAAX_XX_X
15._ICS_40___
AACGCCCCGGACTTGGCTAACTAAX_XX_X
16._ICS_40___
__CGCC______TTGG__AACTAAX_XX_X
17._ICS_40___
__CGCC______TTGG__AACTAAX_XX_X
18._ICS_40___
AACGCCCCGGACTTGGCTAA__AAX_XX_X
19._ICS_40___
__CGCC______TTGG__AACTAAX_XX_X
20._ICS_40___
__CGCC____AC__________AAX_XX_X
21._ICS_40___
AACGCCCCGGACTTGGCTAACTAAX_XX_X
22._ICS_40___
AACCTTCCGGCCCTGGCCATCTAAX_XX_X
23._ICS_40___
__CCTT______CTGG__ATCTAAX_XX_X
24._ICS_40___
__CGCC______CTCG__AACTAAX_XX_X

Input profile: ICS_40 RUQ_1432

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._ICS_40 RUQ_1432

73.5 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

2._ICS_40

57.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 16
 Dapeng Zhang, 2016

3._ICS_40

57.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 4 > FP
 Dapeng Zhang, 2016

4._ICS_40 GC-01-106-6-03

56.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

5._ICS_40

55.7 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 1
 Dapeng Zhang, 2016

6._ICS_40

55.7 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 4
 Dapeng Zhang, 2016

7._ICS_40

55.7 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 6
 Dapeng Zhang, 2016

8._ICS_40

55.7 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 11
 Dapeng Zhang, 2016

9._ICS_40

55.7 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 13
 Dapeng Zhang, 2016

10._ICS_40 RUQ_1432

55.7 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

11._ICS_40 GC-01-106-6-03

55.6 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: Dead
 Mars, 2018

12._ICS_40 GC-01-106-6-03

55.6 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

13._ICS_40 GC-01-106-6-03

55.6 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: Dead
 Mars, 2018

14._ICS_40 GC-01-106-6-03

55.6 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

15._ICS_40 GC-01-106-6-03

55.6 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

16._ICS_40

54.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 6 > FP
 Dapeng Zhang, 2016

17._ICS_40

54.3 %
35 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: C0201 2A
 Dapeng Zhang, 2016

18._ICS_40 GC-01-106-6-03

53.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 3, Tree: PL4
Notes: PL4 FP3
 Mars, 2018

19._ICS_40

53.6 %
28 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block2
 Dapeng Zhang, 2016

20._ICS_40 RUQ_1432

52.8 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._ICS_40 GC-01-106-6-03

51.9 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 3, Tree: PL6
Notes: PL6 FP4
 Mars, 2018

22._ICS_40 GC-01-106-6-03

38.9 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

23._ICS_40

35.7 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 9
 Dapeng Zhang, 2016

24._ICS_40

34.3 %
35 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B E287 T4
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998