SNP Profiles of ICS 1 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AC	GG	AA	AG	AA	AA	AC	AA	GG	AA	AA	AA	CC
1._MITC-000297	CC	AC	GG	AA	AG	AA	AA	AC	AA	GG	AA	AA	AA	CC
2._ICS_1_Fld#_73_Plt#_2	CC	AC	GG	AA	AG	AA	AA	AC	AA	GG	AA	AA	AA	CC
3._RUQ_847	_	_	_	_	_	TT	_	_	_	_	AA	_	_	_
4._ICS1	_	_	_	_	_	CC	_	_	_	_	GG	_	_	_
5._ICS_1	_	_	_	_	_	TT	AA	_	AA	_	_	_	_	_
6._ICS_1	_	_	_	_	_	TT	AA	_	AA	_	_	_	_	_
7._ICS_1	_	_	_	_	_	TT	AA	_	AA	_	_	_	_	_
8._ICS_1	_	_	_	_	_	TT	AA	_	AA	_	_	_	_	_
9._ICS_1	_	_	_	_	_	TT	AA	_	AA	_	_	_	_	_
10._ICS_1	_	_	_	_	_	TT	AA	_	AA	_	_	_	_	_
11._ICS_1	_	_	_	_	_	TT	AA	_	AA	_	_	_	_	_
12._RUQ_847	_	_	_	_	_	TT	AA	_	AA	_	_	_	_	_
13._RUQ_847	_	_	_	_	_	TT	AA	_	AA	_	_	_	_	_
14._RUQ_847	_	_	_	_	_	TT	_	GT	_	_	AA	_	_	_
15._ICS_1	_	_	_	_	_	CC	GG	_	AA	_	_	_	_	_
16._NA	CC	AC	GG	AA	CT	TT	AA	GT	AA	CC	AA	TT	TT	GG
17._NA	CC	AC	GG	AA	CT	TT	AA	GT	AA	CC	AA	TT	TT	GG
18._NA	CC	AC	GG	AA	CT	TT	AA	GT	AA	CC	AA	TT	TT	GG
19._NA	CC	AC	GG	AA	CT	TT	AA	GT	AA	CC	AA	TT	TT	GG
20._NA	CC	AC	GG	AA	CT	TT	AA	GT	AA	CC	AA	TT	TT	GG
21._NA	CC	AC	GG	AA	CT	TT	AA	GT	AA	CC	AA	TT	TT	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	AA	GG	AG	AA	GG	AA	AA	AA	AG	CC	AA	AC	GG
1._MITC-000297	GG	AA	GG	AG	AA	GG	AA	AA	AA	AG	CC	AA	AC	GG
2._ICS_1_Fld#_73_Plt#_2	GG	AA	GG	AG	AA	GG	AA	AA	AA	AG	CC	AA	AC	GG
3._RUQ_847	_	_	_	_	_	_	_	TT	AA	_	CC	_	_	CC
4._ICS1	_	_	_	_	_	_	_	CT	CC	_	CG	_	_	CT
5._ICS_1	_	TT	CC	_	AA	_	TT	_	AA	CT	GG	AA	GT	CC
6._ICS_1	_	TT	CC	_	AA	_	TT	_	AA	CT	GG	AA	GT	CC
7._ICS_1	_	TT	CC	_	AA	_	TT	_	AA	CT	GG	AA	GT	CC
8._ICS_1	_	TT	CC	_	AA	_	TT	_	AA	CT	GG	AA	GT	CC
9._ICS_1	_	TT	CC	_	AA	_	TT	_	AA	CT	GG	AA	GT	CC
10._ICS_1	_	TT	CC	_	AA	_	TT	_	AA	CT	GG	AA	GT	CC
11._ICS_1	_	TT	CC	_	AA	_	TT	_	AA	CT	GG	AA	GT	CC
12._RUQ_847	_	TT	CC	_	AA	_	TT	_	AA	CT	GG	AG	GT	CC
13._RUQ_847	_	TT	CC	_	AA	_	TT	_	AA	CT	GG	AG	GT	CC
14._RUQ_847	_	TT	_	CT	_	_	_	TT	AA	CT	GG	AA	GT	CC
15._ICS_1	_	TT	TT	_	AC	_	TT	_	AC	CT	GG	GG	GT	CC
16._NA	CC	TT	CC	TT	AA	GG	TT	TT	AA	CT	GG	AA	GT	CC
17._NA	CC	TT	CC	TT	AA	GG	TT	TT	AA	CT	GG	AA	GT	CC
18._NA	CC	TT	CC	TT	AA	GG	TT	TT	AA	CT	GG	AA	GT	CC
19._NA	CC	TT	CC	TT	AA	GG	TT	TT	AA	CT	GG	AA	GT	CC
20._NA	CC	TT	CC	TT	AA	GG	TT	TT	AA	CT	GG	AA	GT	CC
21._NA	CC	TT	CC	TT	AA	GG	TT	TT	AA	CT	GG	AA	GT	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AA	TT	AG	AA	CG	AG	GG	AG	GG	CC	AT	AT	AG	AA
1._MITC-000297	AA	TT	AG	AA	CG	AG	GG	AG	GG	CC	AT	AT	AG	AA
2._ICS_1_Fld#_73_Plt#_2	AA	TT	AG	AA	CG	AG	GG	AG	GG	CC	AT	AT	AG	AA
3._RUQ_847	_	_	AG	AA	CG	AG	_	_	_	_	_	_	_	AA
4._ICS1	_	_	AG	AC	CG	AG	_	_	_	_	_	_	_	AG
5._ICS_1	TT	_	_	AA	CG	AG	_	CT	GG	_	_	AT	_	_
6._ICS_1	TT	_	_	AA	CG	AG	_	CT	GG	_	_	AT	_	_
7._ICS_1	TT	_	_	AA	CG	AG	_	CT	GG	_	_	AT	_	_
8._ICS_1	TT	_	_	AA	CG	AG	_	CT	GG	_	_	AT	_	_
9._ICS_1	TT	_	_	AA	CG	AG	_	CT	GG	_	_	AT	_	_
10._ICS_1	TT	_	_	AA	CG	AG	_	CT	GG	_	_	AT	_	_
11._ICS_1	TT	_	_	AA	CG	AG	_	CT	GG	_	_	AT	_	_
12._RUQ_847	TT	_	_	AA	CG	AG	_	CT	GG	_	_	AT	_	_
13._RUQ_847	TT	_	_	AA	CG	AG	_	CT	GG	_	_	AT	_	_
14._RUQ_847	_	_	AG	AA	CG	AG	_	CT	_	_	_	_	AG	AA
15._ICS_1	CT	_	_	AA	CC	AA	_	CC	GG	_	_	AT	_	_
16._NA	TT	AA	AG	AA	CG	AG	GG	CT	GG	GG	AT	AT	AG	AA
17._NA	TT	AA	AG	AA	CG	AG	GG	CT	GG	GG	AT	AT	AG	AA
18._NA	TT	AA	AG	AA	CG	AG	GG	CT	GG	GG	AT	AT	AG	AA
19._NA	TT	AA	AG	AA	CG	AG	GG	CT	GG	GG	AT	AT	AG	AA
20._NA	TT	AA	AG	AA	CG	AG	GG	CT	GG	GG	AT	AT	AG	AA
21._NA	TT	AA	AG	AA	CG	AG	GG	CT	GG	GG	AT	AT	AG	AA

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AT	AG	AG	GG	GG	AA	CG	AA	CC	CC	GG	AA	AA	CC
1._MITC-000297	AT	AG	AG	GG	GG	AA	CG	AA	CC	CC	GG	AA	AA	CC
2._ICS_1_Fld#_73_Plt#_2	AT	AG	AG	GG	GG	AA	CG	AA	CC	CC	GG	AA	AA	CC
3._RUQ_847	AT	CT	_	_	_	_	CG	_	_	_	_	_	_	CC
4._ICS1	TT	CT	_	_	_	_	GG	_	_	_	_	_	_	CC
5._ICS_1	AT	_	_	_	GG	_	_	_	_	CC	_	TT	_	CC
6._ICS_1	AT	_	_	_	GG	_	_	_	_	CC	_	TT	_	_
7._ICS_1	AT	_	_	_	GG	_	_	_	_	CC	_	TT	_	CC
8._ICS_1	AT	_	_	_	GG	_	_	_	_	CC	_	TT	_	CC
9._ICS_1	AT	_	_	_	GG	_	_	_	_	CC	_	TT	_	CC
10._ICS_1	AT	_	_	_	GG	_	_	_	_	CC	_	TT	_	CC
11._ICS_1	AT	_	_	_	GG	_	_	_	_	CC	_	TT	_	CC
12._RUQ_847	AT	_	_	_	GG	_	_	_	_	CC	_	TT	_	CC
13._RUQ_847	AT	_	_	_	GG	_	_	_	_	CC	_	TT	_	CC
14._RUQ_847	AT	_	_	_	_	_	CG	_	_	CC	_	TT	_	CC
15._ICS_1	AA	_	_	_	GG	_	_	_	_	AA	_	GG	_	CG
16._NA	AT	CT	AG	GG	GG	AA	CG	_	CC	CC	GG	TT	AA	CC
17._NA	AT	CT	AG	GG	GG	AA	CG	_	CC	CC	GG	TT	AA	_
18._NA	AT	CT	AG	GG	GG	AA	CG	_	CC	CC	GG	TT	AA	CC
19._NA	AT	CT	AG	GG	GG	AA	CG	_	CC	CC	GG	TT	AA	CC
20._NA	AT	CT	AG	GG	GG	AA	CG	_	CC	CC	GG	TT	AA	CC
21._NA	AT	CT	AG	GG	GG	AA	CG	_	CC	CC	GG	TT	AA	CC

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	AC	AG	AG	AA	AG	AG	AC	GG	AG	AC	AC	AC	AC	CC
1._MITC-000297	AC	AG	AG	AA	AG	AG	AC	GG	AG	AC	AC	AC	AC	CC
2._ICS_1_Fld#_73_Plt#_2	AC	AG	AG	AA	AG	AG	AC	GG	AG	AC	AC	AC	AC	CC
3._RUQ_847	AC	_	CT	_	_	_	_	_	_	GT	_	_	_	_
4._ICS1	CC	_	CC	_	_	_	_	_	_	GT	_	_	_	_
5._ICS_1	AC	_	_	TT	_	_	GT	_	_	_	_	_	_	_
6._ICS_1	AC	_	_	TT	_	_	GT	_	_	_	_	_	_	_
7._ICS_1	AC	_	_	TT	_	_	GT	_	_	_	_	_	_	_
8._ICS_1	AC	_	_	TT	_	_	GT	_	_	_	_	_	_	_
9._ICS_1	AC	_	_	TT	_	_	GT	_	_	_	_	_	_	_
10._ICS_1	AC	_	_	TT	_	_	GT	_	_	_	_	_	_	_
11._ICS_1	AC	_	_	TT	_	_	GT	_	_	_	_	_	_	_
12._RUQ_847	AC	_	_	CT	_	_	GT	_	_	_	_	_	_	_
13._RUQ_847	AC	_	_	TT	_	_	GT	_	_	_	_	_	_	_
14._RUQ_847	AA	_	CT	TT	_	_	GT	GG	CT	_	_	GT	AC	_
15._ICS_1	CC	_	_	TT	_	_	GG	_	_	_	_	_	_	_
16._NA	AC	CT	CT	TT	AG	AG	GT	GG	CT	GT	GT	GT	AC	GG
17._NA	AC	CT	CT	TT	AG	AG	GT	GG	CT	GT	GT	GT	AC	GG
18._NA	AC	CT	CT	TT	AG	AG	GT	GG	CT	GT	GT	GT	AC	GG
19._NA	AC	CT	CT	TT	AG	AG	GT	GG	CT	GT	GT	GT	AC	GG
20._NA	AC	CT	CT	TT	AG	AG	GT	GG	CT	GT	GT	GT	AC	GG
21._NA	AC	CT	CT	TT	AG	AG	GT	GG	CT	GT	GT	GT	AC	GG

	71	72	73	74	75	76	77	78	79	80	81	82
_Input profile	AG	CG	GG	GG	AA	AA	AA	GG	AA	AA	AA	AG	X_X	X_X
1._MITC-000297	AG	CG	GG	GG	AA	AA	AA	GG	AA	AA	AA	AG	X_X	X_X
2._ICS_1_Fld#_73_Plt#_2	AG	CG	GG	GG	AA	AA	AA	GG	AA	AA	AA	AG	X_X	X_X
3._RUQ_847	AG	CG	CC	_	_	_	_	_	_	_	TT	_	X_X	X_X
4._ICS1	AG	CG	CT	_	_	_	_	_	_	_	CT	_	X_X	X_X
5._ICS_1	_	CG	CC	_	_	_	TT	GG	_	AA	TT	AG	X_X	X_X
6._ICS_1	_	CG	CC	_	_	_	TT	GG	_	AA	TT	AG	X_X	X_X
7._ICS_1	_	CG	CC	_	_	_	TT	GG	_	AA	TT	AG	X_X	X_X
8._ICS_1	_	CG	CC	_	_	_	TT	GG	_	AA	TT	AG	X_X	X_X
9._ICS_1	_	CG	CC	_	_	_	TT	GG	_	AA	TT	AG	X_X	X_X
10._ICS_1	_	CG	CC	_	_	_	TT	GG	_	AA	TT	AG	X_X	X_X
11._ICS_1	_	_	CC	_	_	_	TT	GG	_	AA	TT	AG	X_X	X_X
12._RUQ_847	_	CG	CC	_	_	_	TT	GG	_	AA	TT	AG	X_X	X_X
13._RUQ_847	_	CG	CC	_	_	_	TT	GG	_	AA	TT	AG	X_X	X_X
14._RUQ_847	_	CG	CC	_	-	AA	_	_	_	_	_	AG	X_X	X_X
15._ICS_1	_	GG	CC	_	_	_	TT	CG	_	AA	TT	AG	X_X	X_X
16._NA	AA	CG	CC	CC	AA	AA	TT	GG	TT	AA	TT	AG	X_X	X_X
17._NA	AA	CG	CC	CC	AA	AA	TT	GG	TT	AA	TT	AG	X_X	X_X
18._NA	AA	CG	CC	CC	AA	AA	TT	GG	TT	AA	TT	AG	X_X	X_X
19._NA	AA	CG	CC	CC	AA	AA	TT	GG	TT	AA	TT	AG	X_X	X_X
20._NA	AA	CG	CC	CC	AA	AA	TT	GG	TT	AA	TT	AG	X_X	X_X
21._NA	AA	CG	CC	CC	AA	AA	TT	GG	TT	AA	TT	AG	X_X	X_X

Input profile: ICS_1 RUQ_847

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

1._ICS_1 MITC-000297

identical
82 shared markers

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USDA-SHRS, United States of America

2._ICS_1 ICS_1_Fld#_73_Plt#_2

identical
82 shared markers

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USDA-TARS, United States of America

Location: Field: 73, Tree: 2

3._ICS_1 RUQ_847

63.6 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: GBR207

Jocelyn De Wever et al., 2019

4._ICS_1 ICS1

34.1 %
22 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam

Location: CEFORTT

Jocelyn De Wever et al., 2019

5._ICS_1

54.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 8

Dapeng Zhang, 2016

6._ICS_1

52.9 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 7

Dapeng Zhang, 2016

7._ICS_1

54.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 6

Dapeng Zhang, 2016

8._ICS_1

54.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 5

Dapeng Zhang, 2016

9._ICS_1

54.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 3

Dapeng Zhang, 2016

10._ICS_1

54.3 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

11._ICS_1

52.9 %
34 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block4

Dapeng Zhang, 2016

12._ICS_1 RUQ_847

52.9 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

13._ICS_1 RUQ_847

52.9 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

14._ICS_1 RUQ_847

48.6 %
37 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

15._ICS_1

25.7 %
35 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

16._ICS_1 NA

53.1 %
81 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

17._ICS_1 NA

52.5 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

18._ICS_1 NA

53.1 %
81 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

19._ICS_1 NA

53.1 %
81 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

20._ICS_1 NA

53.1 %
81 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

21._ICS_1 NA

53.1 %
81 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

Key to SNP Markers

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1350	20	TcSNP1383
21	TcSNP1414	22	TcSNP1439	23	TcSNP144	24	TcSNP1442	25	TcSNP1458
26	TcSNP1484	27	TcSNP150	28	TcSNP151	29	TcSNP1520	30	TcSNP154
31	TcSNP174	32	TcSNP193	33	TcSNP226	34	TcSNP230	35	TcSNP240
36	TcSNP242	37	TcSNP25	38	TcSNP28	39	TcSNP316	40	TcSNP32
41	TcSNP329	42	TcSNP364	43	TcSNP372	44	TcSNP413	45	TcSNP418
46	TcSNP42	47	TcSNP429	48	TcSNP430	49	TcSNP448	50	TcSNP497
51	TcSNP521	52	TcSNP529	53	TcSNP547	54	TcSNP560	55	TcSNP561
56	TcSNP577	57	TcSNP591	58	TcSNP60	59	TcSNP602	60	TcSNP619
61	TcSNP653	62	TcSNP689	63	TcSNP723	64	TcSNP731	65	TcSNP75
66	TcSNP751	67	TcSNP776	68	TcSNP799	69	TcSNP823	70	TcSNP836
71	TcSNP860	72	TcSNP872	73	TcSNP891	74	TcSNP894	75	TcSNP899
76	TcSNP90	77	TcSNP917	78	TcSNP929	79	TcSNP944	80	TcSNP953
81	TcSNP994	82	TcSNP998